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Analysis and Applications of Discrete Preimage Problems

Research Project

Project/Area Number 18H04113
Research Category

Grant-in-Aid for Scientific Research (A)

Allocation TypeSingle-year Grants
Section一般
Review Section Medium-sized Section 61:Human informatics and related fields
Research InstitutionKyoto University

Principal Investigator

Akutsu Tatauya  京都大学, 化学研究所, 教授 (90261859)

Co-Investigator(Kenkyū-buntansha) 永持 仁  京都大学, 情報学研究科, 教授 (70202231)
細川 浩  京都大学, 情報学研究科, 講師 (90359779)
Project Period (FY) 2018-04-01 – 2023-03-31
Project Status Completed (Fiscal Year 2022)
Budget Amount *help
¥43,420,000 (Direct Cost: ¥33,400,000、Indirect Cost: ¥10,020,000)
Fiscal Year 2021: ¥10,530,000 (Direct Cost: ¥8,100,000、Indirect Cost: ¥2,430,000)
Fiscal Year 2020: ¥10,400,000 (Direct Cost: ¥8,000,000、Indirect Cost: ¥2,400,000)
Fiscal Year 2019: ¥10,400,000 (Direct Cost: ¥8,000,000、Indirect Cost: ¥2,400,000)
Fiscal Year 2018: ¥6,630,000 (Direct Cost: ¥5,100,000、Indirect Cost: ¥1,530,000)
Keywords逆問題 / ニューラルネットワーク / 整数計画法 / ケモインフォマティクス / バイオインフォマティクス / グラフアルゴリズム / 特徴ベクトル / 生成AI
Outline of Final Research Achievements

We studied the discrete preimage problem, in which prediction functions for discrete data are obtained using machine learning methods and then novel discrete data are obtained by computing the preimages for given properties. In this project, we developed methods for the problem based on mixed integer linear programming with focusing on design of chemical structures. As for the prediction functions, we mainly used artificial neural networks, and developed novel representation models such as the two-layered model for efficiently handle chemical structures. As a result, our developed methods could compute preimages for moderate-size chemical structures. From a theoretical viewpoint, we obtained several results on discrete models, which include analysis of relations between the compression ratio and the numbers of layers and nodes in autoencoders using linear threshold activation functions.

Academic Significance and Societal Importance of the Research Achievements

本研究により、新規構造データ生成のための新たな方法論である離散原像問題という枠組みを確立した。原像(逆像)の計算自体は一般に計算困難なクラスに属するが、混合整数線形計画法を効果的に適用するための計算手法や数理モデルを開発し、中規模の化学構造データに対し、実際に原像が計算可能なことを示した。近年、生成AIが注目を集めているが、既存手法とは大きく異なる方法論を示したこともあり、独創的でかつ発展性の高い成果が得られたと考えられる。
この方法論を発展・拡張することにより新規で有用な化合物、さらには、タンパク質などの設計につながる可能性があり、社会的観点からも応用可能性の高い成果が得られたと考えられる。

Report

(5 results)
  • 2022 Final Research Report ( PDF )
  • 2021 Annual Research Report
  • 2020 Annual Research Report
  • 2019 Annual Research Report
  • 2018 Annual Research Report
  • Research Products

    (57 results)

All 2022 2021 2020 2019 2018 Other

All Int'l Joint Research (5 results) Journal Article (28 results) (of which Int'l Joint Research: 13 results,  Peer Reviewed: 28 results,  Open Access: 12 results) Presentation (23 results) (of which Int'l Joint Research: 19 results,  Invited: 8 results) Book (1 results)

  • [Int'l Joint Research] Monash University(オーストラリア)

    • Related Report
      2019 Annual Research Report
  • [Int'l Joint Research] 国立交通大学(その他の国・地域)

    • Related Report
      2019 Annual Research Report
  • [Int'l Joint Research] University of Manchester(英国)

    • Related Report
      2019 Annual Research Report
  • [Int'l Joint Research] The University of Hong Kong(中国)

    • Related Report
      2018 Annual Research Report
  • [Int'l Joint Research] Monash University(オーストラリア)

    • Related Report
      2018 Annual Research Report
  • [Journal Article] A Method for Molecular Design Based on Linear Regression and Integer Programming2022

    • Author(s)
      Zhu Jianshen、Azam Naveed A.、Haraguchi Kazuya、Zhao Liang、Nagamochi Hiroshi、Akutsu Tatsuya
    • Journal Title

      Proc. 12th International Conference on Bioscience, Biochemistry and Bioinformatics

      Volume: N/A Pages: 21-28

    • DOI

      10.1145/3510427.3510431

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Adjustive Linear Regression and Its Application to the Inverse QSAR2022

    • Author(s)
      Zhu Jianshen、Haraguchi Kazuya、Nagamochi Hiroshi、Akutsu Tatsuya
    • Journal Title

      Proc. 15th International Joint Conference on Biomedical Engineering Systems and Technologies - BIOINFORMATICS

      Volume: N/A Pages: 144-151

    • DOI

      10.5220/0010853700003123

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Identification of periodic attractors in Boolean networks using a priori information2022

    • Author(s)
      Munzner Ulrike、Mori Tomoya、Krantz Marcus、Klipp Edda、Akutsu Tatsuya
    • Journal Title

      PLOS Computational Biology

      Volume: 18 Issue: 1 Pages: e1009702-e1009702

    • DOI

      10.1371/journal.pcbi.1009702

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] A novel graph convolutional neural network for predicting interaction sites on protein kinase inhibitors in phosphorylation2022

    • Author(s)
      Wang Feiqi、Chen Yun-Ti、Yang Jinn-Moon、Akutsu Tatsuya
    • Journal Title

      Scientific Reports

      Volume: 12 Issue: 1 Pages: 229-229

    • DOI

      10.1038/s41598-021-04230-7

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] A novel method for inference of acyclic chemical compounds with bounded branch-height based on artificial neural networks and integer programming2021

    • Author(s)
      Azam Naveed Ahmed、Zhu Jianshen、Sun Yanming、Shi Yu、Shurbevski Aleksandar、Zhao Liang、Nagamochi Hiroshi、Akutsu Tatsuya
    • Journal Title

      Algorithms for Molecular Biology

      Volume: 16 Issue: 1 Pages: 18-18

    • DOI

      10.1186/s13015-021-00197-2

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] 機械学習QSARの整数計画法に基づく逆解析法2021

    • Author(s)
      NAGAMOCHI Hiroshi、ZHU Jianshen、AZAM Naveed Ahmed、HARAGUCHI Kazuya、ZHAO Liang、AKUTSU Tatsuya
    • Journal Title

      Journal of Computer Chemistry, Japan

      Volume: 20 Issue: 3 Pages: 106-111

    • DOI

      10.2477/jccj.2021-0030

    • NAID

      130008130265

    • ISSN
      1347-1767, 1347-3824
    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] An Improved Integer Programming Formulation for Inferring Chemical Compounds with Prescribed Topological Structures2021

    • Author(s)
      Zhu Jianshen、Azam Naveed Ahmed、Haraguchi Kazuya、Zhao Liang、Nagamochi Hiroshi、Akutsu Tatsuya
    • Journal Title

      Lecture Notes in Computer Science

      Volume: 12798 Pages: 197-209

    • DOI

      10.1007/978-3-030-79457-6_17

    • ISBN
      9783030794569, 9783030794576
    • Related Report
      2021 Annual Research Report
    • Peer Reviewed
  • [Journal Article] An Inverse QSAR Method Based on Decision Tree and Integer Programming2021

    • Author(s)
      Tanaka Kouki、Zhu Jianshen、Azam Naveed Ahmed、Haraguchi Kazuya、Zhao Liang、Nagamochi Hiroshi、Akutsu Tatsuya
    • Journal Title

      Lecture Notes in Computer Science

      Volume: 12837 Pages: 628-644

    • DOI

      10.1007/978-3-030-84529-2_53

    • ISBN
      9783030845285, 9783030845292
    • Related Report
      2021 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Discrimination of attractors with noisy nodes in Boolean networks2021

    • Author(s)
      Cheng Xiaoqing、Ching Wai-Ki、Guo Sini、Akutsu Tatsuya
    • Journal Title

      Automatica

      Volume: 130 Pages: 109630-109630

    • DOI

      10.1016/j.automatica.2021.109630

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Uncovering and classifying the role of driven nodes in control of complex networks2021

    • Author(s)
      Yuma Shinzawa, Tatsuya Akutsu and Jose C. Nacher
    • Journal Title

      Scientific Reports

      Volume: 11 Issue: 1 Pages: 9627-9627

    • DOI

      10.1038/s41598-021-88295-4

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Probabilistic Critical Controllability Analysis of Protein Interaction Networks Integrating Normal Brain Ageing Gene Expression Profiles2021

    • Author(s)
      Yamaguchi Eimi、Akutsu Tatsuya、Nacher Jose C.
    • Journal Title

      International Journal of Molecular Sciences

      Volume: 22 Issue: 18 Pages: 9891-9891

    • DOI

      10.3390/ijms22189891

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] An Inverse QSAR Method Based on a Two-Layered Model and Integer Programming2021

    • Author(s)
      Shi Yu、Zhu Jianshen、Azam Naveed Ahmed、Haraguchi Kazuya、Zhao Liang、Nagamochi Hiroshi、Akutsu Tatsuya
    • Journal Title

      International Journal of Molecular Sciences

      Volume: 22 Issue: 6 Pages: 2847-2847

    • DOI

      10.3390/ijms22062847

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] ReCGBM: a gradient boosting-based method for predicting human dicer cleavage sites2021

    • Author(s)
      Liu Pengyu、Song Jiangning、Lin Chun-Yu、Akutsu Tatsuya
    • Journal Title

      BMC Bioinformatics

      Volume: 22 Issue: 1 Pages: 63-63

    • DOI

      10.1186/s12859-021-03993-0

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Weighted minimum feedback vertex sets and implementation in human cancer genes detection2021

    • Author(s)
      Li Ruiming、Lin Chun-Yu、Guo Wei-Feng、Akutsu Tatsuya
    • Journal Title

      BMC Bioinformatics

      Volume: 22 Issue: 1 Pages: 143-143

    • DOI

      10.1186/s12859-021-04062-2

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Molecular Design Based on Artificial Neural Networks, Integer Programming and Grid Neighbor Search2021

    • Author(s)
      Azam Naveed Ahmed、Zhu Jianshen、Haraguchi Kazuya、Zhao Liang、Nagamochi Hiroshi、Akutsu Tatsuya
    • Journal Title

      Proc. 2021 IEEE International Conference on Bioinformatics and Biomedicine

      Volume: N/A Pages: 360-363

    • DOI

      10.1109/bibm52615.2021.9669710

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A novel method for inference of chemical compounds of cycle index two with desired properties based on artificial neural networks and integer programming2020

    • Author(s)
      Jianshen Zhu, Chenxi Wang, Aleksandar Shurbevski, Hiroshi Nagamochi,Tatsuya Akutsu
    • Journal Title

      Algorithms

      Volume: 13 Issue: 5 Pages: 124-124

    • DOI

      10.3390/a13050124

    • NAID

      120006993972

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Comparison of Pseudoknotted RNA Secondary Structures by Topological Centroid Identification and Tree Edit Distance2020

    • Author(s)
      Wang Feiqi、Akutsu Tatsuya、Mori Tomoya
    • Journal Title

      Journal of Computational Biology

      Volume: 27 Issue: 9 Pages: 1443-1451

    • DOI

      10.1089/cmb.2019.0512

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Extracting boolean and probabilistic rules from trained neural networks2020

    • Author(s)
      Liu Pengyu、Melkman Avraham A.、Akutsu Tatsuya
    • Journal Title

      Neural Networks

      Volume: 126 Pages: 300-311

    • DOI

      10.1016/j.neunet.2020.03.024

    • NAID

      120006936364

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] A New Integer Linear Programming Formulation to the Inverse QSAR/QSPR for Acyclic Chemical Compounds Using Skeleton Trees2020

    • Author(s)
      Zhang Fan、Zhu Jianshen、Chiewvanichakorn Rachaya、Shurbevski Aleksandar、Nagamochi Hiroshi、Akutsu Tatsuya
    • Journal Title

      Lecture Notes in Computer Science

      Volume: 12114 Pages: 433-444

    • DOI

      10.1007/978-3-030-55789-8_38

    • NAID

      120006893967

    • ISBN
      9783030557881, 9783030557898
    • Related Report
      2020 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Convolutional neural network approach to lung cancer classification integrating protein interaction network and gene expression profiles2019

    • Author(s)
      Teppei Matsubara, Tomoshiro Ochiai, Morihiro Hayashida, Tatsuya Akutsu and Jose C. Nacher
    • Journal Title

      Journal of Bioinformatics and Computational Biology

      Volume: 17 Issue: 03 Pages: 1940007-1940007

    • DOI

      10.1142/s0219720019400079

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Deep learning with evolutionary and genomic profiles for identifying cancer subtypes2019

    • Author(s)
      C-Y. Lin, P. Ruan, R. Li, J-M. Yang, S. See, J. Song, T. Akutsu
    • Journal Title

      Journal of Bioinformatics and Computational Biology

      Volume: 17 Issue: 03 Pages: 1940005-1940005

    • DOI

      10.1142/s0219720019400055

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Identification of the structure of a probabilistic Boolean network from samples including frequencies of outcomes2019

    • Author(s)
      T. Akutsu, A. A. Melkman
    • Journal Title

      IEEE Transactions on Neural Networks and Learning Systems

      Volume: 30 Issue: 8 Pages: 2383-2396

    • DOI

      10.1109/tnnls.2018.2884454

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Probabilistic controllability approach to metabolic fluxes in normal and cancer tissues2019

    • Author(s)
      Jean-Marc Schwartz, Hiroaki Otokuni, Tatsuya Akutsu and Jose C. Nacher
    • Journal Title

      Nature Communications

      Volume: 10 Issue: 1 Pages: 2725-2725

    • DOI

      10.1038/s41467-019-10616-z

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] On the Number of Driver Nodes for Controlling a Boolean Network when the Targets are Restricted to Attractors2019

    • Author(s)
      Wenpin Hou, Peying Ruan, Wai-Ki. Ching, Tatsuya Akutsu
    • Journal Title

      Journal of Theoretical Biolog

      Volume: 463 Pages: 1-11

    • DOI

      10.1016/j.jtbi.2018.12.012

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Resource Cut, a New Bounding Procedure to Algorithms for Enumerating Tree-Like Chemical Graphs2019

    • Author(s)
      Yuhei Nishiyama, Aleksandar Shurbevski , Hiroshi Nagamochi, Tatsuya Akutsu
    • Journal Title

      IEEE/ACM Transactions on Computational Biology and Bioinformatics

      Volume: 16 Issue: 1 Pages: 77-90

    • DOI

      10.1109/tcbb.2018.2832061

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Identifying a Probabilistic Boolean Threshold Network From Samples2018

    • Author(s)
      Avraham A. Melkman, Xiaoqing Cheng, Wai-Ki Ching, Tatsuya Akutsu
    • Journal Title

      IEEE Transactions on Neural Networks and Learning Systems

      Volume: 29 Issue: 4 Pages: 869-881

    • DOI

      10.1109/tnnls.2017.2648039

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Enumerating Substituted Benzene Isomers of Tree-Like Chemical Graphs2018

    • Author(s)
      J. Li, H. Nagamochi, T. Akutsu
    • Journal Title

      IEEE/ACM Trans. Comput. Biology Bioinform.

      Volume: 15(2) Issue: 2 Pages: 633-646

    • DOI

      10.1109/tcbb.2016.2628888

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Determining the minimum number of protein-protein interactions required to support known protein complexes2018

    • Author(s)
      Natsu Nakajima, Morihiro Hayashida, Jesper Jansson, Osamu Maruyama, Tatsuya Akutsu
    • Journal Title

      PLOS ONE

      Volume: 13 Issue: 4 Pages: e0195545-e0195545

    • DOI

      10.1371/journal.pone.0195545

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Presentation] Adjustive Linear Regression and Its Application to the Inverse QSAR2022

    • Author(s)
      Zhu Jianshen、Haraguchi Kazuya、Nagamochi Hiroshi、Akutsu Tatsuya
    • Organizer
      15th International Joint Conference on Biomedical Engineering Systems and Technologies - BIOINFORMATICS
    • Related Report
      2021 Annual Research Report
    • Int'l Joint Research
  • [Presentation] A Method for Molecular Design Based on Linear Regression and Integer Programming2022

    • Author(s)
      Zhu Jianshen、Azam Naveed A.、Haraguchi Kazuya、Zhao Liang、Nagamochi Hiroshi、Akutsu Tatsuya
    • Organizer
      12th International Conference on Bioscience, Biochemistry and Bioinformatics
    • Related Report
      2021 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Graph Theoretic Approaches to Analysis and Control of Biological Networks2021

    • Author(s)
      Tatsuya Akutsu
    • Organizer
      2021 IEEE the 9th International Conference on Bioinformatics and Computational Biology
    • Related Report
      2021 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Control and Observation of Boolean Networks when Targets are Restricted to Attractors2021

    • Author(s)
      Tatsuya Akutsu
    • Organizer
      Modeling and Control of Boolean Dynamical Systems (Workshop in European Control Conference 2021)
    • Related Report
      2021 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] On the Compressive Power of Boolean Threshold Autoencoders2021

    • Author(s)
      Tatsuya Akutsu
    • Organizer
      The 1st Online Conference on Algorithms
    • Related Report
      2021 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 機械学習QSARの整数計画法に基づく逆解析法2021

    • Author(s)
      NAGAMOCHI Hiroshi、ZHU Jianshen、AZAM Naveed Ahmed、HARAGUCHI Kazuya、ZHAO Liang、AKUTSU Tatsuya
    • Organizer
      日本コンピュータ化学会2021年春季年会
    • Related Report
      2021 Annual Research Report
  • [Presentation] An Improved Integer Programming Formulation for Inferring Chemical Compounds with Prescribed Topological Structures2021

    • Author(s)
      Zhu Jianshen、Azam Naveed Ahmed、Haraguchi Kazuya、Zhao Liang、Nagamochi Hiroshi、Akutsu Tatsuya
    • Organizer
      34th International Conference on Industrial, Engineering and Other Applications of Applied Intelligent Systems
    • Related Report
      2021 Annual Research Report
    • Int'l Joint Research
  • [Presentation] An Inverse QSAR Method Based on Decision Tree and Integer Programming2021

    • Author(s)
      Tanaka Kouki、Zhu Jianshen、Azam Naveed Ahmed、Haraguchi Kazuya、Zhao Liang、Nagamochi Hiroshi、Akutsu Tatsuya
    • Organizer
      17th International Conference on Intelligent Computing
    • Related Report
      2021 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Molecular Design Based on Artificial Neural Networks, Integer Programming and Grid Neighbor Search2021

    • Author(s)
      Azam Naveed Ahmed、Zhu Jianshen、Haraguchi Kazuya、Zhao Liang、Nagamochi Hiroshi、Akutsu Tatsuya
    • Organizer
      2021 IEEE International Conference on Bioinformatics and Biomedicine
    • Related Report
      2020 Annual Research Report
    • Int'l Joint Research
  • [Presentation] A New Integer Linear Programming Formulation to the Inverse QSAR/QSPR for Acyclic Chemical Compounds Using Skeleton Trees2020

    • Author(s)
      F. Zhang, J. Jianshen, R. Chiewvanichakorn , A. Shurbevski, H. Nagamochi, T. Akutsu
    • Organizer
      33rd International Conference on Industrial, Engineering and Other Applications of Applied Intelligent Systems (IEA/AIE 2020)
    • Related Report
      2020 Annual Research Report
    • Int'l Joint Research
  • [Presentation] A novel method for the inverse QSAR/QSPR to monocyclic chemical compounds based on artificial neural networks and integer programming2020

    • Author(s)
      R. Ito, N. A. Azam, C. Wang, A. Shurbevski, H. Nagamochi, T. Akutsu
    • Organizer
      21st International Conference on Bioinformatics & Computational Biology
    • Related Report
      2020 Annual Research Report
    • Int'l Joint Research
  • [Presentation] A novel method for the inverse QSAR/QSPR based on artificial neural networks and mixed integer linear programming with guaranteed admissibility2020

    • Author(s)
      N. A. Azam, R. Chiewvanichakorn, F. Zhang, A. Shurbevski, H. Nagamochi, T. Akutsu
    • Organizer
      13th International Joint Conference on Biomedical Engineering Systems and Technologies
    • Related Report
      2019 Annual Research Report
  • [Presentation] A method for the inverse QSAR/QSPR based on artificial neural networks and mixed integer linear programming2020

    • Author(s)
      R. Chiewvanichakorn, C. Wang, Z. Zhan, A. Shurbevski, H. Nagamochi, T. Akutsu
    • Organizer
      12th International Conference on Bioscience, Biochemistry and Bioinformatics
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research
  • [Presentation] A method for the inverse QSAR/QSPR based on artificial neural networks and mixed integer linear programming2019

    • Author(s)
      R. Chiewvanichakorn, C. Wang, Z. Zhan, A. Shurbevski, H. Nagamochi, T. Akutsu
    • Organizer
      第123回MPS・第58回BIO合同研究発表会
    • Related Report
      2019 Annual Research Report
  • [Presentation] Graph theoretic approaches to controllability of biological networks2019

    • Author(s)
      T. Akutsu
    • Organizer
      Workshop on Bioinformatics and Data Analysis
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 細胞種情報解析における数理モデル概説2019

    • Author(s)
      阿久津達也
    • Organizer
      第1回 幹細胞情報学イニシアティブ研究会
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] T. Akutsu2019

    • Author(s)
      On control and observation of attractors in Boolean networks
    • Organizer
      International Symposium on the Genetics of Industrial Microorganisms 2019
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Integration and Analysis of Heterogeneous Biological Data via Convolutional Neural Networks and Matrix Factorization2019

    • Author(s)
      Tatsuya Akutsu
    • Organizer
      9th International Conference on Bioscience, Biochemistry and Bioinformatics
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] A Mixed Integer Linear Programming Formulation to Artificial Neural Networks2019

    • Author(s)
      Tatsuya Akutsu, Hiroshi Nagamochi
    • Organizer
      2nd International Conference on Information Science and System
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Algorithms for Analysis and Control of Boolean Networks2018

    • Author(s)
      Tatsuya Akutsu
    • Organizer
      5th International Conference on Algorithms for Computational Biology
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Deep Learning with Evolutionary and Genomic Profiles for Identifying Cancer Subtypes2018

    • Author(s)
      Chun-Yu Lin, Ruiming Li, Tatsuya. Akutsu, Peiyng Ruan, Simon Sea, Jinn-Moon. Yang
    • Organizer
      International Workshop on Cancer Bioinformatics and Intelligent Medicine 2018
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Convolutional Neural Network Approach to Lung Cancer Classification Integrating Protein Interaction Network and Gene Expression Profiles2018

    • Author(s)
      Teppei Matsubara, Jose C. Nacher, Tomoshiro Ochiai, Morihiro Hayashida, Tatsuya Akutsu
    • Organizer
      International Workshop on Cancer Bioinformatics and Intelligent Medicine 2018
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] New and Improved Algorithms for Unordered Tree Inclusion2018

    • Author(s)
      Tatsuya Akutsu, Jesper Jansson, Ruiming Li, Atsuhiro Takasu, Takeyuki Tamura
    • Organizer
      29th International Symposium on Algorithms and Computation
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Book] バイオインフォマティクス, Python による実践レシピ2020

    • Author(s)
      Antao,T. (著)、阿久津 達也、竹本和広 (訳)
    • Total Pages
      320
    • Publisher
      朝倉書店
    • ISBN
      9784254122541
    • Related Report
      2020 Annual Research Report

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Published: 2018-04-23   Modified: 2024-01-30  

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