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Quantification and mathematical modeling of non-equilibrium dissipation inside biomolecular motors

Research Project

Project/Area Number 18K03564
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Review Section Basic Section 13040:Biophysics, chemical physics and soft matter physics-related
Research InstitutionOsaka University (2023)
Yamaguchi University (2018-2022)

Principal Investigator

Ariga Takayuki  大阪大学, 大学院生命機能研究科, 准教授 (30452262)

Project Period (FY) 2018-04-01 – 2024-03-31
Project Status Completed (Fiscal Year 2023)
Budget Amount *help
¥4,420,000 (Direct Cost: ¥3,400,000、Indirect Cost: ¥1,020,000)
Fiscal Year 2020: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2019: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2018: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Keywords生体分子モーター / 1分子計測・操作 / エネルギー変換 / 非平衡物理学 / 生物物理 / 生体物質の物理
Outline of Final Research Achievements

Kinesins that carry vesicles in cells are biomolecular motors that convert chemical energy into mechanical work. Despite progress in understanding their kinetic mechanisms, our understanding of energy conversion has not progressed. In this study, we constructed a mathematical model to explain nontrivial phenomena such as internal dissipation and fluctuation-induced acceleration of kinesins, which we found in our previous studies and in other projects. As a result, we succeeded in constructing a model that can explain various experimental results while satisfying thermodynamic requirements.

Academic Significance and Societal Importance of the Research Achievements

エネルギーをいかにして効率よく利用するのかは、人類にとって重要な課題である。生物が作りだす小さな分子モーターは、環境の熱揺らぎを有効に使いながら化学的なエネルギーを力学的な仕事へと効率よく変換している。その仕組みを実験と理論を通じてミクロなスケールから理解することは、人類が今まで活用していなかったエネルギー利用の仕組みを、将来的に応用可能としうる意義を持つ。

Report

(7 results)
  • 2023 Annual Research Report   Final Research Report ( PDF )
  • 2022 Research-status Report
  • 2021 Research-status Report
  • 2020 Research-status Report
  • 2019 Research-status Report
  • 2018 Research-status Report
  • Research Products

    (35 results)

All 2024 2023 2022 2021 2020 2019 2018 Other

All Journal Article (9 results) (of which Peer Reviewed: 6 results,  Open Access: 3 results) Presentation (22 results) (of which Int'l Joint Research: 6 results,  Invited: 11 results) Remarks (4 results)

  • [Journal Article] Measuring fluctuating dynamics of sparsely crosslinked actin gels with dual-feedback nonlinear microrheology2023

    • Author(s)
      Nishizawa Kenji、Honda Natsuki、Inokuchi Shono、Ebata Hiroyuki、Ariga Takayuki、Mizuno Daisuke
    • Journal Title

      Physical Review E

      Volume: 108 Issue: 3 Pages: 034601-034601

    • DOI

      10.1103/physreve.108.034601

    • Related Report
      2023 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Nonthermal Fluctuation Accelerates Molecular Motor Kinesin2023

    • Author(s)
      有賀隆行 , 立石圭人 , 富重道雄 , 水野大介
    • Journal Title

      Seibutsu Butsuri

      Volume: 63 Issue: 2 Pages: 86-90

    • DOI

      10.2142/biophys.63.86

    • ISSN
      0582-4052, 1347-4219
    • Related Report
      2022 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] 非熱的なゆらぎで加速する分子モーター2023

    • Author(s)
      有賀隆行
    • Journal Title

      月刊「細胞」

      Volume: 55

    • Related Report
      2022 Research-status Report
  • [Journal Article] Noise-Induced Acceleration of Single Molecule Kinesin-12021

    • Author(s)
      Ariga Takayuki、Tateishi Keito、Tomishige Michio、Mizuno Daisuke
    • Journal Title

      Physical Review Letters

      Volume: 127 Issue: 17 Pages: 178101-178101

    • DOI

      10.1103/physrevlett.127.178101

    • Related Report
      2021 Research-status Report
    • Peer Reviewed
  • [Journal Article] Feedback Microrheology in Soft Matter2021

    • Author(s)
      Kenji Nishizawa, Natsuki Honda, Masahiro Ikenaga, Shono Inokuchi, Yujiro Sugino, Takayuki Ariga, Daisuke Mizuno
    • Journal Title

      arXiv preprint

      Volume: -

    • Related Report
      2021 Research-status Report
    • Open Access
  • [Journal Article] Noise-induced acceleration of single molecule kinesin-12020

    • Author(s)
      Ariga Takayuki、Tateishi Keito、Tomishige Michio、Daisuke Mizuno
    • Journal Title

      arXiv preprint

      Volume: -

    • Related Report
      2020 Research-status Report
    • Open Access
  • [Journal Article] Experimental and theoretical energetics of walking molecular motors under fluctuating environments2020

    • Author(s)
      Ariga Takayuki、Tomishige Michio、Mizuno Daisuke
    • Journal Title

      Biophysical Reviews

      Volume: 12 Issue: 2 Pages: 503-510

    • DOI

      10.1007/s12551-020-00684-7

    • Related Report
      2019 Research-status Report
    • Peer Reviewed
  • [Journal Article] Measuring Dissipation of Molecular Motor Kinesin2019

    • Author(s)
      ARIGA Takayuki、TOMISHIGE Michio、MIZUNO Daisuke
    • Journal Title

      Seibutsu Butsuri

      Volume: 59 Issue: 6 Pages: 300-304

    • DOI

      10.2142/biophys.59.300

    • NAID

      130007751043

    • ISSN
      0582-4052, 1347-4219
    • Related Report
      2019 Research-status Report
    • Peer Reviewed
  • [Journal Article] Nonequilibrium Energetics of Molecular Motor Kinesin2018

    • Author(s)
      Ariga Takayuki、Tomishige Michio、Mizuno Daisuke
    • Journal Title

      Physical Review Letters

      Volume: 121 Issue: 21 Pages: 218101-218101

    • DOI

      10.1103/physrevlett.121.218101

    • Related Report
      2018 Research-status Report
    • Peer Reviewed
  • [Presentation] 生体分子モーターキネシンのゆらぎと応答2024

    • Author(s)
      有賀隆行
    • Organizer
      非平衡系の物理
    • Related Report
      2023 Annual Research Report
  • [Presentation] 生体分子モーターキネシンのゆらぎによる加速現象2024

    • Author(s)
      有賀隆行
    • Organizer
      第3回 生命科学系3研究科合同セミナー
    • Related Report
      2023 Annual Research Report
  • [Presentation] 生体分子モーターキネシンのゆらぎによる加速現象2024

    • Author(s)
      有賀隆行
    • Organizer
      生体運動研究合同班会議2024
    • Related Report
      2023 Annual Research Report
  • [Presentation] Nonthermal fluctuations accelerate the biomolecular motor kinesin-12023

    • Author(s)
      Takayuki Ariga
    • Organizer
      28th International Conference on Statistical Physics
    • Related Report
      2023 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 非熱的にゆらぐ細胞内環境に最適化する生体分子モーター2023

    • Author(s)
      有賀隆行
    • Organizer
      Workshop OT 2023 最適輸送とその周辺
    • Related Report
      2022 Research-status Report
    • Invited
  • [Presentation] 生体分子モーターキネシンのエネルギー論とゆらぎによる加速現象2023

    • Author(s)
      有賀 隆行
    • Organizer
      第10回ソフトマター研究会
    • Related Report
      2022 Research-status Report
    • Invited
  • [Presentation] Single-molecule energetics and nonthermal manipulation of molecular motor kinesin2022

    • Author(s)
      Takayuki Ariga
    • Organizer
      2022 East Asian Single-Molecule Biophysics Symposium (EASMB 2022)
    • Related Report
      2022 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] 分子モーターキネシン1のゆらぎ誘導加速現象2021

    • Author(s)
      有賀隆行, 立石圭人, 富重道雄, 水野大介
    • Organizer
      第59回 日本生物物理学会年会
    • Related Report
      2021 Research-status Report
  • [Presentation] 人工的な疑似細胞内アクティブ環境 におけるキネシンの運動2021

    • Author(s)
      立石圭人, 有賀隆行
    • Organizer
      日本物理学会2021年秋季大会
    • Related Report
      2021 Research-status Report
  • [Presentation] Motion of molecular motors reflecting rheological properties in cells2021

    • Author(s)
      Takayuki Ariga
    • Organizer
      The 2nd Joint Meeting of The European Society for Clinical Hemorheology and Microcirculation, The International Society for Clinical Hemorheology, and The International Society of Biorheology
    • Related Report
      2021 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] アクティブなゆらぎとキネシンの数理モデル2020

    • Author(s)
      有賀隆行
    • Organizer
      第10回分子モーター討論会
    • Related Report
      2020 Research-status Report
    • Invited
  • [Presentation] キネシン1の運動と細胞骨格が生む無秩序なゆらぎ2020

    • Author(s)
      有賀隆行
    • Organizer
      第58回 日本生物物理学会年会
    • Related Report
      2020 Research-status Report
    • Invited
  • [Presentation] Measuring Dissipation of a Molecular Motor, Kinesin-1, and the Mathematical Model Analysis2020

    • Author(s)
      Takayuki Ariga
    • Organizer
      The 1st Symposium on Molecular Engine
    • Related Report
      2019 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] アクティブ環境下でのキネシンの運動2020

    • Author(s)
      有賀隆行,立石圭人,富重道雄,水野大介
    • Organizer
      日本物理学会 第 75 回年次大会
    • Related Report
      2019 Research-status Report
  • [Presentation] 確率過程模型によるキネシンの特徴付け2020

    • Author(s)
      西村和真,有賀隆行,伊丹將人,佐々真一
    • Organizer
      日本物理学会 第 75 回年次大会
    • Related Report
      2019 Research-status Report
  • [Presentation] キネシン(1)のエネルギー論と細胞内アクティブ環境2019

    • Author(s)
      有賀 隆行
    • Organizer
      第9回分子モーター討論会
    • Related Report
      2019 Research-status Report
    • Invited
  • [Presentation] Nonequilibrium Energetics of a walking motor kinesin-12019

    • Author(s)
      Takayuki Ariga
    • Organizer
      第57回日本生物物理学会年会
    • Related Report
      2019 Research-status Report
    • Invited
  • [Presentation] 分子モーターキネシンの非平衡エネルギー論と細胞内アクティブ環境2018

    • Author(s)
      有賀隆行
    • Organizer
      理論と実験研究会
    • Related Report
      2018 Research-status Report
  • [Presentation] Energetics of molecular motor kinesin2018

    • Author(s)
      Takayuki Ariga, Michio Tomishige, Daisuke Mizuno
    • Organizer
      International Conference on APEF 2018
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research
  • [Presentation] Nonequilibrium energetics of single molecule motor, kinesin2018

    • Author(s)
      Takayuki Ariga, Michio Tomishige, Daisuke Mizuno
    • Organizer
      10th Biennial Sigle Molecule Biophysics Conference
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research
  • [Presentation] 生体分子モーターの非平衡エネルギー論 ~キネシンは効率の悪いモーターだった!?~2018

    • Author(s)
      有賀隆行
    • Organizer
      第2回岡崎発動分子科学セミナー
    • Related Report
      2018 Research-status Report
    • Invited
  • [Presentation] 生体分子モーター・キネシンのエネルギー収支2018

    • Author(s)
      有賀隆行
    • Organizer
      第137回 福工大土曜談話会
    • Related Report
      2018 Research-status Report
    • Invited
  • [Remarks] 有賀隆行 - メンバー - 1分子生物学研究室 - 大阪大学大学院生命機能研究科

    • URL

      https://www.fbs.osaka-u.ac.jp/labs/ueda/ariga.html

    • Related Report
      2023 Annual Research Report
  • [Remarks] 山口大学大学院医学系研究科 微生物学講座|有賀隆行

    • URL

      http://mb.med.yamaguchi-u.ac.jp/ariga/index.html

    • Related Report
      2021 Research-status Report 2020 Research-status Report 2019 Research-status Report
  • [Remarks] PRL論文公開・ニュースリリースしました

    • URL

      https://researchmap.jp/jomohjov5-2514524/#_2514524

    • Related Report
      2018 Research-status Report
  • [Remarks] 歩行型生体分子モーターのエネルギー入出力を解明

    • URL

      http://www.yamaguchi-u.ac.jp/weeklynews/2018/_7502.html

    • Related Report
      2018 Research-status Report

URL: 

Published: 2018-04-23   Modified: 2025-01-30  

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