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Structural prediction and reaction analysis of ferredoxin: NADP reductase by ultrafast laser spectroscopy

Research Project

Project/Area Number 18K05050
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Review Section Basic Section 32010:Fundamental physical chemistry-related
Research InstitutionInstitute for Laser Technology

Principal Investigator

Seiji Taniguchi  公益財団法人レーザー技術総合研究所, レーザーバイオ化学研究チーム, 副主任研究員 (00342725)

Co-Investigator(Kenkyū-buntansha) 田中 文夫  公益財団法人レーザー技術総合研究所, 研究部, 特別研究員1 (20022907)
Project Period (FY) 2018-04-01 – 2021-03-31
Project Status Completed (Fiscal Year 2020)
Budget Amount *help
¥4,290,000 (Direct Cost: ¥3,300,000、Indirect Cost: ¥990,000)
Fiscal Year 2020: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2019: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2018: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Keywordsフェムト秒時間分解蛍光計測 / フェレドキシン:NADP+還元酵素 / サイクリック電子電子伝達反応 / フラビン酵素 / 光誘起電子移動反応 / レーザー / 時間分解蛍光 / 電子伝達反応 / 蛋白構造
Outline of Final Research Achievements

The photosynthetic reaction changes the electron transfer process due to environmental factors, but the change in the role of ferredoxin: NADP + reductase (FNR) involved in the final stage is not clear. In this study, in order to verify the possibility that multiple FNR protein structures exist in the solution and their roles are different, the structure of FNR in the solution was predicted by observation of the ultrafast photoinduced electron transfer reaction of FNR by femtosecond laser measurement, and the analysis of the electron transfer rate incorporating the MD and MO calculation. As a result, it was clarified that the photoexcitation of FNR causes an ultrafast photoinduced electron transfer reaction of about 200 fs, but the structure in solution is single and unlikely to have multiple structures.

Academic Significance and Societal Importance of the Research Achievements

本研究成果は、自然界において最も重要な化学反応のひとつである光合成反応の環境による変化の要因を、光合成に関わる酵素の溶液中での立体構造変化を予測するという新しい手法により解き明かそうとしたものであり、学術的に高い意義を持つ。またこれらの要因の解明は、悪環境でも育成する穀物といった品種改良への応用など、社会的意義は非常に高いと言える。

Report

(4 results)
  • 2020 Annual Research Report   Final Research Report ( PDF )
  • 2019 Research-status Report
  • 2018 Research-status Report
  • Research Products

    (6 results)

All 2021 2020 2019

All Journal Article (6 results) (of which Int'l Joint Research: 2 results,  Peer Reviewed: 6 results,  Open Access: 3 results)

  • [Journal Article] Interactions between isoalloxazine and o-aminobenzoate in o-aminobenzoate- D-amino acid oxidase complex. Molecular dynamics and molecular orbital studies2021

    • Author(s)
      Arthit Nueangaudom, Somsak Pianwanit, Haruhiko Tamaoki, Yasuzo Nishina, Fumio Tanaka, Seiji Taniguchi, Haik Chosrowjan
    • Journal Title

      Journal of Photochemistry & Photobiology, A: Chemistry

      Volume: 408 Pages: 113090-113100

    • DOI

      10.1016/j.jphotochem.2020.113090

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Interactions between isoalloxazine and o-aminobenzoate in o-aminobenzoate- D-amino acid oxidase complex. Molecular dynamics and molecular orbital studies2021

    • Author(s)
      Arthit Nueangaudom, Somsak Pianwanit, Haruhiko Tamaoki, Yasuzo Nishina, Fumio Tanaka, Seiji Taniguchi, Haik Chosrowjan
    • Journal Title

      RSC Advances

      Volume: 11 Issue: 15 Pages: 8821-8832

    • DOI

      10.1039/d0ra09716k

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Simultaneous analyses of the rates of photoinduced charge separation and recombination between the excited flavin and tryptophans in some flavoproteins: Molecular dynamics simulation2020

    • Author(s)
      Kiattisak Lugsanangarm, Haruhiko Tamaoki, Yasuzo Nishina, Kitamura Masaya, Nadtanet Nunthaboot, Fumio Tanaka, Seiji Taniguchi, Haik Chosrowjan
    • Journal Title

      AIP advances

      Volume: 10 Issue: 10

    • DOI

      10.1063/5.0014718

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Effects of protein association on the rates of photoinduced electron transfer from tryptophan residues to excited flavin in medium-chain acyl-Co A dehydrogenase. Molecular dynamics simulation2020

    • Author(s)
      Kiattisak Lugsanangarm, Fumio Tanaka, Sirirat Kokpol, Nadtanet Nunthaboot, Seiji Taniguchi, Haik Chosrowjan
    • Journal Title

      Journal of Photochemistry & Photobiology, A: Chemistry

      Volume: 407 Pages: 113039-113049

    • DOI

      10.1016/j.jphotochem.2020.113039

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed
  • [Journal Article] comparative studies on picosecond-resolved fluorescence of D-amino acid oxidases from human with one from porcine kidney. Photoinduced electron transfer from aromatic amino acids to the excited flavin2019

    • Author(s)
      Seiji Taniguchi, Haik Chosrowjan, Syoji Ito, Hiroshi Miyasaka Masumi Katane, Hiroshi Homma, Fumio Tanaka, Arthit Nueangaudom, Kiattisak Lugsanangarm, Sirirat Kokpol
    • Journal Title

      Journal of Photochemistry & Photobiology, B: Biology

      Volume: 198 Pages: 111546-111558

    • DOI

      10.1016/j.jphotobiol.2019.111546

    • Related Report
      2019 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Comparative Study on the Mechanism of Photoinduced Electron Transfer from Tryptophan 168 to Excited Flavin in T169S and Wild-type Pyranose 2‐Oxidase2019

    • Author(s)
      Arthit Nueangaudom, Kiattisak Lugsanangarm, Somsak Pianwanit, Sirirat Kokpol, Nadtanet Nunthaboot, Fumio Tanaka, Seiji Taniguchi, Haik Chosrowjan
    • Journal Title

      ACS OMEGA

      Volume: 4 Issue: 1 Pages: 593-605

    • DOI

      10.1021/acsomega.8b02158

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research

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Published: 2018-04-23   Modified: 2022-01-27  

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