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Establishment of the technical basis for a new "protein cage structure analysis methods" using ferritin

Research Project

Project/Area Number 18K05314
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Review Section Basic Section 37010:Bio-related chemistry
Research InstitutionTokyo Institute of Technology

Principal Investigator

Kanamaru Shuji  東京工業大学, 生命理工学院, 助教 (50376951)

Project Period (FY) 2018-04-01 – 2023-03-31
Project Status Completed (Fiscal Year 2022)
Budget Amount *help
¥4,420,000 (Direct Cost: ¥3,400,000、Indirect Cost: ¥1,020,000)
Fiscal Year 2020: ¥910,000 (Direct Cost: ¥700,000、Indirect Cost: ¥210,000)
Fiscal Year 2019: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2018: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Keywords単粒子解析 / ケージ蛋白質 / 立体構造解析 / 構造解析 / 蛋白質ケージ / Scaffold / クライオ電顕 / scaffold / scafold
Outline of Final Research Achievements

To determine the structure of proteins smaller than 50 kDa using cryo-EM single-particle analysis, we first constructed an over-expression system in Escherichia coli and succeeded in confining the target protein in the inner cavity of a 24-mer ferritin protein cage. In addition, we succeeded in selectively purifying only the cages in which the target protein was introduced by using appropriate purification tags.
On the other hand, the number of target proteins in the inner cavity could be controlled to some extent by narrowing the inner space, but it was difficult to align the position and orientation of the target protein even by changing the type and length of the linker, and we still could not obtain the high-resolution structure of the target proteins.

Academic Significance and Societal Importance of the Research Achievements

本研究で開発したフェリチン24量体内部空洞に効率的に標的蛋白質を導入し、単離精製する方法は、内部空洞の大きさよりも小さい蛋白質であれば標的蛋白質の配列を変えることなく簡便に導入することが出来る。フェリチンのもつ高い熱安定性・pH安定性を利用することで内部空洞に導入した蛋白質に機能を改変せずに安定性を付加することができると期待される。

Report

(6 results)
  • 2022 Annual Research Report   Final Research Report ( PDF )
  • 2021 Research-status Report
  • 2020 Research-status Report
  • 2019 Research-status Report
  • 2018 Research-status Report
  • Research Products

    (15 results)

All 2022 2021 2020 2019 2018

All Journal Article (8 results) (of which Int'l Joint Research: 4 results,  Peer Reviewed: 8 results,  Open Access: 8 results) Presentation (7 results) (of which Int'l Joint Research: 1 results)

  • [Journal Article] Rapid and sensitive SARS-CoV-2 detection using a homogeneous fluorescent immunosensor Quenchbody with crowding agents2022

    • Author(s)
      Zhu Bo、Nosaka Nobuyuki、Kanamaru Shuji、Dong Jinhua、Dai Yancen、Inoue Akihito、Yang Yinghui、Kobayashi Kaori、Kitaguchi Tetsuya、Iwasaki Hiroshi、Koike Ryuji、Wakabayashi Kenji、Ueda Hiroshi
    • Journal Title

      The Analyst

      Volume: 147 Issue: 22 Pages: 4971-4979

    • DOI

      10.1039/d2an01051h

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Cell-free protein crystallization for nanocrystal structure determination2022

    • Author(s)
      Abe Satoshi、Tanaka Junko、Kojima Mariko、Kanamaru Shuji、Hirata Kunio、Yamashita Keitaro、Kobayashi Ayako、Ueno Takafumi
    • Journal Title

      Scientific Reports

      Volume: 12 Issue: 1 Pages: 16031-16031

    • DOI

      10.1038/s41598-022-19681-9

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Heterogeneous IgE reactivities to <i>Staphylococcus pseudintermedius</i> strains in dogs with atopic dermatitis, and the identification of DM13-domain-containing protein as a bacterial IgE-reactive molecule2022

    • Author(s)
      Takemura-Uchiyama Iyo、Tsurui Hiroki、Shimakura Hidekatsu、Nasukawa Tadahiro、Imanishi Ichiro、Uchiyama Jumpei、Fukuyama Tomoki、Sakamoto Shuji、Morisawa Keiko、Fujimura Masato、Murakami Hironobu、Kanamaru Shuji、Kurokawa Kenji、Kawamoto Keiko、Iyori Keita、Sakaguchi Masahiro
    • Journal Title

      FEMS Microbiology Letters

      Volume: 369 Issue: 1 Pages: 1-7

    • DOI

      10.1093/femsle/fnac019

    • Related Report
      2021 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] A conserved Ctp1/CtIP C-terminal peptide stimulates Mre11 endonuclease activity2021

    • Author(s)
      Zdravkovic Aleksandar、Daley James M.、Dutta Arijit、Niwa Tatsuya、Murayama Yasuto、Kanamaru Shuji、Ito Kentaro、Maki Takahisa、Argunhan Bilge、Takahashi Masayuki、Tsubouchi Hideo、Sung Patrick、Iwasaki Hiroshi
    • Journal Title

      Proceedings of the National Academy of Sciences

      Volume: 118 Issue: 11 Pages: 1-7

    • DOI

      10.1073/pnas.2016287118

    • Related Report
      2021 Research-status Report 2020 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Oxidation of aromatic and aliphatic aldehydes to carboxylic acids by Geotrichum candidum aldehyde dehydrogenase2020

    • Author(s)
      Hoshino Tomoyasu、Yamabe Emi、Hawari Muhammad Arisyi、Tamura Mayumi、Kanamaru Shuji、Yoshida Keisuke、Koesoema Afifa Ayu、Matsuda Tomoko
    • Journal Title

      Tetrahedron

      Volume: 76 Issue: 33 Pages: 131387-131387

    • DOI

      10.1016/j.tet.2020.131387

    • Related Report
      2020 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Real-time tracking reveals catalytic roles for the two DNA binding sites of Rad512020

    • Author(s)
      Ito Kentaro、Murayama Yasuto、Kurokawa Yumiko、Kanamaru Shuji、Kokabu Yuichi、Maki Takahisa、Mikawa Tsutomu、Argunhan Bilge、Tsubouchi Hideo、Ikeguchi Mitsunori、Takahashi Masayuki、Iwasaki Hiroshi
    • Journal Title

      Nature Communications

      Volume: 11 Issue: 1 Pages: 1-17

    • DOI

      10.1038/s41467-020-16750-3

    • NAID

      120007117439

    • Related Report
      2020 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Structure and Function of the T4 Spackle Protein Gp61.32020

    • Author(s)
      Kanamaru Shuji、Uchida Kazuya、Nemoto Mai、Fraser Alec、Arisaka Fumio、Leiman Petr G.
    • Journal Title

      Viruses

      Volume: 12 Issue: 10 Pages: 1070-1070

    • DOI

      10.3390/v12101070

    • Related Report
      2020 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Cooperative interactions facilitate stimulation of Rad51 by the Swi5-Sfr1 auxiliary factor complex.2020

    • Author(s)
      Argunhan B, Sakakura M, Afshar N, Kurihara M, Ito K, Maki T, Kanamaru S, Murayama Y, Tsubouchi H, Takahashi M, Takahashi H, Iwasaki H.
    • Journal Title

      eLife

      Volume: 9

    • DOI

      10.7554/elife.52566

    • NAID

      120007117502

    • Related Report
      2019 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Presentation] T2 類縁ファージのレセプター結合ドメインによる宿主認識2021

    • Author(s)
      金丸周司
    • Organizer
      第8回ファージ研究会
    • Related Report
      2021 Research-status Report
  • [Presentation] ファージレセプター結合蛋白質と宿主レセプターの相互作用解析2021

    • Author(s)
      金丸 周司, 竹村 和浩, Aleksandar Zdravkovic
    • Organizer
      第59回生物物理年会
    • Related Report
      2021 Research-status Report
  • [Presentation] フェリチン1 分子中のH, L サブユニットの割合制御と鉄ナノ粒子の結晶性の比較2021

    • Author(s)
      金丸 朋子, 金丸 周司, 吉村 英恭
    • Organizer
      第59回生物物理年会
    • Related Report
      2021 Research-status Report
  • [Presentation] Bacteriophage T4 as a platform for molecular engine2020

    • Author(s)
      Shuji Kanamaru, Takafumi Ueno
    • Organizer
      The 1st International Symposium on "Molecular Engine"
    • Related Report
      2019 Research-status Report
    • Int'l Joint Research
  • [Presentation] Structural and functional analysis of phage receptor binding protein and OmpC2019

    • Author(s)
      Shuji Kanamaru
    • Organizer
      第57回日本生物物理学会年会
    • Related Report
      2019 Research-status Report
  • [Presentation] PP01ファージのgp38レセプター結合ドメインの構造2018

    • Author(s)
      金丸周司
    • Organizer
      第7回ファージ研究会
    • Related Report
      2018 Research-status Report
  • [Presentation] Structure and function of phage receptor binding protein2018

    • Author(s)
      金丸周司
    • Organizer
      第56回生物物理学会年会
    • Related Report
      2018 Research-status Report

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Published: 2018-04-23   Modified: 2024-01-30  

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