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Functional analysis of the DNA damage response regulator protein PprI in the radioresistant bacterium Deinococcus radiodurans

Research Project

Project/Area Number 18K05423
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Review Section Basic Section 38020:Applied microbiology-related
Research InstitutionNational Institutes for Quantum and Radiological Science and Technology

Principal Investigator

Satoh Katsuya  国立研究開発法人量子科学技術研究開発機構, 高崎量子応用研究所 放射線生物応用研究部, 上席研究員(定常) (90370402)

Project Period (FY) 2018-04-01 – 2021-03-31
Project Status Completed (Fiscal Year 2020)
Budget Amount *help
¥4,420,000 (Direct Cost: ¥3,400,000、Indirect Cost: ¥1,020,000)
Fiscal Year 2020: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2019: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2018: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Keywords放射線抵抗性細菌 / デイノコッカス・ラジオデュランス / DNA損傷応答機構 / DNA修復機構 / PprI / 放射線乾燥応答モチーフ / DdrA / DdrO / PprIタンパク質 / DdrOタンパク質 / DdrAタンパク質 / DNA修復 / DNA損傷応答 / タンパク質 / 遺伝子
Outline of Final Research Achievements

The PprI protein is highly conserved in the radioresistant bacterium Deinococcus and consists of three domains, which is metalloprotease, DNA binding and GAF-like binding domains. In an effort to gain an insight into the role of PprI in DNA damage response mechanism in D. radiodurans, the functional analyses of PprI were conducted. The pprI-deleted mutant strain, wild-type and 15 mutated pprI expression plasmids were constructed. The pprI-deleted mutant strains carrying two mutated pprI plasmids (E119Q and E149Q) exhibited significant sensitive to gamma rays compared to wild-type, respectively. Moreover, the DNA damage response using the luciferase reporter assay in these strains were not observed following gamma irradiation. These results suggest that the metalloprotease domain contained these mutation (E119Q and E149Q) plays most critical role for DNA damage response regulator among three domains.

Academic Significance and Societal Importance of the Research Achievements

PprIは、放射性抵抗性細菌において高次に保存される特有のタンパク質であり、機能ドメインとして、メタロプロテアーゼドメイン、DNA結合ドメイン、GAF様結合ドメインを有している。本研究によって、放射性抵抗性細菌に特有のDNA損傷依存的なDNA修復タンパク質群の発現誘導の分子機構において、PprIのメタロプロテアーゼ部位が最も重要な役割を担っていることを見出した。これにより、放射線抵抗性細菌の極めて効率的なDNA修復機構の一端を明らかにすることができた。さらに、DNA修復に重要な役割を担うタンパク質を有用微生物資源として、生命科学・バイオ技術分野の新たな研究開発にも貢献できると考えられる。

Report

(4 results)
  • 2020 Annual Research Report   Final Research Report ( PDF )
  • 2019 Research-status Report
  • 2018 Research-status Report
  • Research Products

    (20 results)

All 2021 2020 2019 2018 Other

All Journal Article (9 results) (of which Peer Reviewed: 4 results,  Open Access: 5 results) Presentation (9 results) (of which Int'l Joint Research: 2 results,  Invited: 1 results) Remarks (2 results)

  • [Journal Article] Construction of Luciferase Reporter Strains for Functional Analysis of DNA Damage Response Regulators2021

    • Author(s)
      Katsuya Satoh, Toshihiko Sanzen, Yutaka Oono, Issay Narumi.
    • Journal Title

      QST Takasaki Annual Report 2019

      Volume: QST-M-29 Pages: 96-96

    • Related Report
      2020 Annual Research Report
    • Open Access
  • [Journal Article] Functional analysis of radiation-inducible protein DdrA and its paralog DdrAP in Deinococcus radiodurans2021

    • Author(s)
      Yusuke Futami, Katsuya Satoh, Naoki Tomita, Toshihiko Sanzen, Taichi Shimosaka, Yutaka Oono, Issay Narumi.
    • Journal Title

      QST Takasaki Annual Report 2019

      Volume: QST-M-29 Pages: 97-97

    • Related Report
      2020 Annual Research Report
    • Open Access
  • [Journal Article] Complete Genome Sequence of the Cesium-Accumulating Bacterium Rhodococcus qingshengii CS98, Isolated from Soil in Japan2020

    • Author(s)
      Satoh Katsuya、Ozawa Shogo、Hayashi Hidenori、Tomioka Noriko、Narumi Issay、Oono Yutaka
    • Journal Title

      Microbiology Resource Announcements

      Volume: 9 Issue: 50

    • DOI

      10.1128/mra.01188-20

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Functional analysis of PprI in the DNA damage response mechanism of Deinococcus radiodurans2020

    • Author(s)
      Katsuya Satoh, Toshihiko Sanzen, Yutaka Oono, Issay Narumi.
    • Journal Title

      QST Takasaki Annual Report 2018

      Volume: QST-M-23 Pages: 83-83

    • Related Report
      2019 Research-status Report
  • [Journal Article] Expression of the Deinococcus grandis imuB and dnaE2 Genes in Escherichia coli2020

    • Author(s)
      Toshihiko Sanzen, Katsuya Satoh, Yutaka Oono, Issay Narumi.
    • Journal Title

      QST Takasaki Annual Report 2018

      Volume: QST-M-23 Pages: 89-89

    • Related Report
      2019 Research-status Report
  • [Journal Article] Studies on Application of Ion Beam Breeding to Industrial Microorganisms at TIARA2019

    • Author(s)
      Satoh Katsuya、Oono Yutaka
    • Journal Title

      Quantum Beam Science

      Volume: 3 Issue: 2 Pages: 11-11

    • DOI

      10.3390/qubs3020011

    • Related Report
      2019 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Complete Genome Sequence of a Radioresistant Bacterial Strain, Deinococcus grandis ATCC 436722019

    • Author(s)
      Shibai Atsushi、Satoh Katsuya、Kawada Masako、Kotani Hazuki、Narumi Issay、Furusawa Chikara
    • Journal Title

      Microbiology Resource Announcements

      Volume: 8 Issue: 45

    • DOI

      10.1128/mra.01226-19

    • Related Report
      2019 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Extended structure of pleiotropic DNA repair-promoting protein PprA from Deinococcus radiodurans2019

    • Author(s)
      Motoyasu Adachi, Rumi Shimizu, Chie Shibazaki, Katsuya Satoh, Satoru Fujiwara, Shigeki Arai, Issay Narumi. Ryota Kuroki
    • Journal Title

      The FASEB Journal

      Volume: 33 Issue: 3 Pages: 3647-3658

    • DOI

      10.1096/fj.201801506r

    • Related Report
      2018 Research-status Report
    • Peer Reviewed
  • [Journal Article] Genome analysis of the radioresistant bacterium Deinococcus aerius TR01252019

    • Author(s)
      Katsuya Satoh, Hiroki Arai, Toshihiko Sanzen, Hidenori Hayashi, Issay Narumi, Yutaka Oono
    • Journal Title

      QST Takasaki Annual Report 2017

      Volume: QST-M-16 Pages: 100-100

    • Related Report
      2018 Research-status Report
  • [Presentation] デイノコッカス・ラジオデュランスのDNA損傷応答機構におけるPprIタンパク質の変異解析2020

    • Author(s)
      佐藤 勝也, 三善 英彦, 鳴海 一成, 大野 豊
    • Organizer
      極限環境生物学会2020年度(第21回)年会
    • Related Report
      2020 Annual Research Report
  • [Presentation] 放射線抵抗性細菌デイノコッカス・ラジオデュランスのDNA修復機構の正確性に関する比較ゲノム解析2020

    • Author(s)
      三善 英彦, 佐藤 勝也, 大野 豊, 鳴海 一成
    • Organizer
      本農芸化学会2020年度大会
    • Related Report
      2019 Research-status Report
  • [Presentation] Deinococcus radioduransのDNA損傷応答タンパク質PprIの機能解析2019

    • Author(s)
      三善 英彦, 佐藤 勝也, 大野 豊, 鳴海 一成.
    • Organizer
      極限環境生物学会2019年度(第20回)年会
    • Related Report
      2019 Research-status Report
  • [Presentation] 放射線抵抗性細菌Deinococcus radioduransのDNA損傷誘導性DdrAタンパク質をコードする遺伝子およびそのパラログDdrAPタンパク質をコードする遺伝子の欠失株の特性解析2019

    • Author(s)
      二見 祐作, 佐藤 勝也, 冨田 尚希, 三善 英彦, 下坂 泰地, 大野 豊, 鳴海 一成.
    • Organizer
      QST高崎サイエンスフェスタ2019
    • Related Report
      2019 Research-status Report
  • [Presentation] The comparative genomic analysis between Deinococcus radiodurans, D. grandis, and D. aerius2018

    • Author(s)
      Katsuya Satoh, Toshihiko Sanzen, Issay Narumi, Yutaka Oono
    • Organizer
      The 12th International Conference on Extremophiles (Extremophiles 2018)
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research
  • [Presentation] Expression of translesion DNA polymerase genes from Deinococcus grandis in Escherichia coli2018

    • Author(s)
      Toshihiko Sanzen, Katsuya Satoh, Issay Narumi
    • Organizer
      The 12th International Conference on Extremophiles (Extremophiles 2018)
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research
  • [Presentation] イオンビームで産業微生物をつくる2018

    • Author(s)
      佐藤 勝也
    • Organizer
      第17回放射線プロセスシンポジウム
    • Related Report
      2018 Research-status Report
    • Invited
  • [Presentation] Deinococcus grandis由来TLSポリメラーゼの大腸菌内での発現2018

    • Author(s)
      三善 英彦, 佐藤 勝也, 鳴海 一成
    • Organizer
      極限環境生物学会2018年度(第19回)年会
    • Related Report
      2018 Research-status Report
  • [Presentation] 放射線抵抗性細菌由来TLSポリメラーゼの大腸菌での発現解析2018

    • Author(s)
      三善 英彦, 佐藤 勝也, 大野 豊, 鳴海 一成
    • Organizer
      QST高崎サイエンスフェスタ2018
    • Related Report
      2018 Research-status Report
  • [Remarks] 量子科学技術研究開発機構・プロジェクト「イオンビーム変異誘発研究」

    • URL

      https://www.qst.go.jp/site/ion-beam-mutagenesis/

    • Related Report
      2020 Annual Research Report 2019 Research-status Report
  • [Remarks] 量子科学技術研究開発機構・プロジェクト「イオンビーム変異誘発研究」

    • URL

      https://www.qst.go.jp/site/taka/2060.html

    • Related Report
      2018 Research-status Report

URL: 

Published: 2018-04-23   Modified: 2022-01-27  

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