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New approach for engineering enzymes using accessory proteins

Research Project

Project/Area Number 18K05445
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Review Section Basic Section 38030:Applied biochemistry-related
Research InstitutionKyoto Prefectural University

Principal Investigator

Tanaka Shun-ichi  京都府立大学, 生命環境科学研究科, 准教授 (70591387)

Co-Investigator(Kenkyū-buntansha) 松村 浩由  立命館大学, 生命科学部, 教授 (30324809)
吉澤 拓也  立命館大学, 生命科学部, 助教 (50779056)
Project Period (FY) 2018-04-01 – 2021-03-31
Project Status Completed (Fiscal Year 2020)
Budget Amount *help
¥4,290,000 (Direct Cost: ¥3,300,000、Indirect Cost: ¥990,000)
Fiscal Year 2020: ¥910,000 (Direct Cost: ¥700,000、Indirect Cost: ¥210,000)
Fiscal Year 2019: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2018: ¥2,210,000 (Direct Cost: ¥1,700,000、Indirect Cost: ¥510,000)
Keywordsタンパク質工学 / 人工結合タンパク質 / 酵素 / 基質特異性 / 進化分子工学
Outline of Final Research Achievements

In this study, to explore the application possibility of our novel enzyme-engineering strategy, Enzyme Engineering by Proxy, we attempted to elucidate the molecular mechanistic aspect of the strategy and conducted a comprehensive analysis on various enzyme systems. We determined the crystal structure of a specificity-modifying proxy protein in complex with a β-galactosidase. This structure and mutational analysis identified key elements important for altering enzyme’s specificity. In addition, we successfully altered substrate specificity of a lipase, suggesting that our strategy can be applied to diverse enzyme systems.

Academic Significance and Societal Importance of the Research Achievements

本研究成果は、酵素工学における新しい方法論の創出を志向するものであり、学術的意義は大きいと考えられる。また、本技術の更なる発展は、従来の手法では難しく諦められていた酵素の機能改変が実現され、新しい食品素材、医薬品、工業原料などの創出に繋がることが期待できる。したがって、本研究成果は学術・産業の両面において意義は大きいと考えられる。

Report

(4 results)
  • 2020 Annual Research Report   Final Research Report ( PDF )
  • 2019 Research-status Report
  • 2018 Research-status Report
  • Research Products

    (17 results)

All 2021 2020 2019 2018 Other

All Int'l Joint Research (2 results) Journal Article (8 results) (of which Peer Reviewed: 8 results,  Open Access: 1 results) Presentation (5 results) (of which Int'l Joint Research: 2 results) Book (1 results) Remarks (1 results)

  • [Int'l Joint Research] ニューヨーク大学/シカゴ大学(米国)

    • Related Report
      2019 Research-status Report
  • [Int'l Joint Research] シカゴ大学/ニューヨーク大学(米国)

    • Related Report
      2018 Research-status Report
  • [Journal Article] Exploring mutable conserved sites and fatal non-conserved sites by random mutation of esterase from Sulfolobus tokodaii and subtilisin from Thermococcus kodakarensis2021

    • Author(s)
      Tanaka Shun-ichi、Tsutaki Minami、Yamamoto Seira、Mizutani Hayate、Kurahashi Ryo、Hirata Azumi、Takano Kazufumi
    • Journal Title

      International Journal of Biological Macromolecules

      Volume: 170 Pages: 343-353

    • DOI

      10.1016/j.ijbiomac.2020.12.171

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Crystal structure of a GH1 β‐glucosidase from Hamamotoa singularis2020

    • Author(s)
      Uehara Ryo、Iwamoto Riki、Aoki Sayaka、Yoshizawa Takuya、Takano Kazufumi、Matsumura Hiroyoshi、Tanaka Shun‐ichi
    • Journal Title

      Protein Science

      Volume: 29 Issue: 9 Pages: 2000-2008

    • DOI

      10.1002/pro.3916

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Spectroscopic Evidence of the Salt-Induced Conformational Change around the Localized Electric Charges on the Protein Surface of Fibronectin Type III2020

    • Author(s)
      Ota Chikashi、Fukuda Yui、Tanaka Shun-ichi、Takano Kazufumi
    • Journal Title

      Langmuir

      Volume: 36 Issue: 47 Pages: 14243-14254

    • DOI

      10.1021/acs.langmuir.0c02367

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Insertion loop‐mediated folding propagation governs efficient maturation of hyperthermophilic Tk‐subtilisin at high temperatures2020

    • Author(s)
      Uehara R., Dan N., Amesaka H., Yoshizawa T., Koga Y.., Kanaya S., Takano K., Matsumura H., Tanaka SI.
    • Journal Title

      FEBS letters

      Volume: 594 Issue: 4 Pages: 452-461

    • DOI

      10.1002/1873-3468.14028

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Crystal structures of the cell-division protein FtsZ from Klebsiella pneumoniae and Escherichia coli2020

    • Author(s)
      Yoshizawa Takuya、Fujita Junso、Terakado Haruna、Ozawa Mayuki、Kuroda Natsuko、Tanaka Shun-ichi、Uehara Ryo、Matsumura Hiroyoshi
    • Journal Title

      Acta Crystallographica Section F Structural Biology Communications

      Volume: 76 Issue: 2 Pages: 86-93

    • DOI

      10.1107/s2053230x2000076x

    • Related Report
      2019 Research-status Report
    • Peer Reviewed
  • [Journal Article] Activity-stability trade-off in random mutant proteins2019

    • Author(s)
      Kurahashi Ryo、Tanaka Shun-ichi、Takano Kazufumi
    • Journal Title

      Journal of Bioscience and Bioengineering

      Volume: 128 Issue: 4 Pages: 405-409

    • DOI

      10.1016/j.jbiosc.2019.03.017

    • NAID

      40022037135

    • Related Report
      2019 Research-status Report
    • Peer Reviewed
  • [Journal Article] Spectroscopic Signature of the Steric Strains in an Escherichia coli RNase HI Cavity-Filling Destabilized Mutant Protein2019

    • Author(s)
      Ota Chikashi、Suzuki Hikari、Tanaka Shun-ichi、Takano Kazufumi
    • Journal Title

      The Journal of Physical Chemistry B

      Volume: 124 Issue: 1 Pages: 91-100

    • DOI

      10.1021/acs.jpcb.9b09852

    • Related Report
      2019 Research-status Report
    • Peer Reviewed
  • [Journal Article] Monobody-Mediated Alteration of Lipase Substrate Specificity2018

    • Author(s)
      Tanaka Shun-ichi、Takahashi Tetsuya、Koide Akiko、Iwamoto Riki、Koikeda Satoshi、Koide Shohei
    • Journal Title

      ACS Chemical Biology

      Volume: 13 Issue: 6 Pages: 1487-1492

    • DOI

      10.1021/acschembio.8b00384

    • Related Report
      2018 Research-status Report
    • Peer Reviewed
  • [Presentation] 抗体工学の可能性を拡げる新たなアプローチ‐シグナル配列のキメラ化によるファージディスプレイ効率の向上‐2020

    • Author(s)
      雨坂心人、高野和文、田中俊一
    • Organizer
      第10 回4大学連携研究フォーラム
    • Related Report
      2020 Annual Research Report
  • [Presentation] Structural insight into the mechanism of Monobody-mediated alteration of enzyme substrate specificity2019

    • Author(s)
      R. Iwamoto, T. Yoshizawa, R. Uehara, K. Takano, S. Koide, H. Matsumura, S.-i. Tanaka
    • Organizer
      International Symposium on Diffraction Structure Biology 2019
    • Related Report
      2019 Research-status Report
    • Int'l Joint Research
  • [Presentation] Exploration of an Efficient Way to Obtain High Activity Protein by Stability Selection2019

    • Author(s)
      R. Kurahashi, S.-i. Tanaka, K. Takano
    • Organizer
      Thermophiles 2019
    • Related Report
      2019 Research-status Report
    • Int'l Joint Research
  • [Presentation] 人工結合タンパク質を介したβ-ガラクトシダーゼの基質特異性改変とその分子メカニズムの解明2019

    • Author(s)
      岩本里樹、吉澤拓也、上原了、高野和文、小出昌平、松村浩由、田中俊一
    • Organizer
      日本農芸化学会
    • Related Report
      2019 Research-status Report
  • [Presentation] Engineering by Proxy: Monobody-mediated alteration of enzyme specificity2019

    • Author(s)
      田中俊一、髙橋哲也、小出明子、岩本里樹、松村浩由、吉澤拓也、高野和文、小池田聡、小出昌平
    • Organizer
      日本農芸化学会2019年度大会
    • Related Report
      2018 Research-status Report
  • [Book] バイオミディア『酵素もアクセでおしゃれがしたい?』2019

    • Author(s)
      田中俊一
    • Total Pages
      1
    • Publisher
      日本生物工学会
    • Related Report
      2018 Research-status Report
  • [Remarks] ACS Chemical Biology

    • URL

      https://pubs.acs.org/doi/10.1021/acschembio.8b00384

    • Related Report
      2018 Research-status Report

URL: 

Published: 2018-04-23   Modified: 2022-01-27  

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