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Analysis of new peptide epimerases for the biosynthesis of peptide natural products

Research Project

Project/Area Number 18K05449
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Review Section Basic Section 38040:Bioorganic chemistry-related
Research InstitutionHokkaido University

Principal Investigator

Ogasawara Yasushi  北海道大学, 工学研究院, 准教授 (20732986)

Project Period (FY) 2018-04-01 – 2022-03-31
Project Status Completed (Fiscal Year 2021)
Budget Amount *help
¥4,420,000 (Direct Cost: ¥3,400,000、Indirect Cost: ¥1,020,000)
Fiscal Year 2020: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2019: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2018: ¥2,080,000 (Direct Cost: ¥1,600,000、Indirect Cost: ¥480,000)
Keywords天然物化学 / 生合成 / ペプチド / エピメラーゼ / 酵素 / 阻害剤 / 天然物 / 反応機構
Outline of Final Research Achievements

While most natural peptides consist of L-amino acids, D-amino acids are also widely identified both in primary and secondary metabolites. The presence of D-amino acids in secondary metabolites is generally a hallmark of peptides biosynthesized via non-ribosomal peptide synthetases and only a few peptide epimerases that introduce D-amino acids residue into polypeptides via epimerization have been reported. In this study, we investigated two novel types of peptide epimerases and revealed novel enzyme chemistry.

Academic Significance and Societal Importance of the Research Achievements

見出した2つの新規エピメリ化酵素は、有機合成的手法では難しい、Lアミノ酸からなる通常のペプチドの選択的なエピメリ化反応を触媒してペプチドにD-アミノ酸残基を導入する。このような酵素はこれまでほとんど知られておらず、本研究は生合成酵素の新たな可能性を見出した点で学術的に重要である。また、D-アミノ酸残基の導入は、一般にペプチドの安定化に寄与することが知られているため、本酵素を用いた生理活性ペプチドの安定化技術への応用が期待できる。

Report

(5 results)
  • 2021 Annual Research Report   Final Research Report ( PDF )
  • 2020 Research-status Report
  • 2019 Research-status Report
  • 2018 Research-status Report
  • Research Products

    (41 results)

All 2022 2021 2020 2019 2018 Other

All Int'l Joint Research (1 results) Journal Article (9 results) (of which Int'l Joint Research: 1 results,  Peer Reviewed: 8 results,  Open Access: 5 results) Presentation (31 results) (of which Int'l Joint Research: 8 results,  Invited: 4 results)

  • [Int'l Joint Research] North Carolina State university(米国)

    • Related Report
      2021 Annual Research Report
  • [Journal Article] Identification of Cyclopropane Formation in the Biosyntheses of Hormaomycins and Belactosins: Sequential Nitration and Cyclopropanation by Metalloenzymes2021

    • Author(s)
      Li Xiaojun、Shimaya Ryo、Dairi Tohru、Chang Wei‐chen、Ogasawara Yasushi
    • Journal Title

      Angewandte Chemie International Edition

      Volume: 61 Issue: 7

    • DOI

      10.1002/anie.202113189

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Identification of pulvomycin as an inhibitor of the futalosine pathway2021

    • Author(s)
      Ogasawara Yasushi、Umetsu Shuhei、Inahashi Yuki、Nonaka Kenichi、Dairi Tohru
    • Journal Title

      The Journal of Antibiotics

      Volume: 74 Issue: 11 Pages: 825-829

    • DOI

      10.1038/s41429-021-00465-8

    • NAID

      120007193348

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Discovery of an alternative pathway of peptidoglycan biosynthesis: A new target for pathway specific inhibitors2021

    • Author(s)
      Ogasawara Yasushi、Dairi Tohru
    • Journal Title

      Journal of Industrial Microbiology and Biotechnology

      Volume: 48 Issue: 9-10

    • DOI

      10.1093/jimb/kuab038

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Identification of the peptide epimerase MslH responsible for d-amino acid introduction at the C-terminus of ribosomal peptides2021

    • Author(s)
      Feng Zhi、Ogasawara Yasushi、Dairi Tohru
    • Journal Title

      Chemical Science

      Volume: 12 Issue: 7 Pages: 2567-2574

    • DOI

      10.1039/d0sc06308h

    • Related Report
      2020 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Involvement of Peptide Epimerization in Poly-γ-glutamic Acid Biosynthesis2019

    • Author(s)
      Ogasawara Yasushi、Shigematsu Mayuko、Sato Shota、Kato Hinata、Dairi Tohru
    • Journal Title

      Organic Letters

      Volume: 21 Issue: 11 Pages: 3972-3975

    • DOI

      10.1021/acs.orglett.9b01121

    • Related Report
      2019 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Identification of actinomycin D as a specific inhibitor of the alternative pathway of peptidoglycan biosynthesis2019

    • Author(s)
      Ogasawara Yasushi、Shimizu Yohei、Sato Yohei、Yoneda Tomoki、Inokuma Yasuhide、Dairi Tohru
    • Journal Title

      The Journal of Antibiotics

      Volume: 73 Issue: 2 Pages: 125-127

    • DOI

      10.1038/s41429-019-0252-2

    • Related Report
      2019 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] In vitro characterization of MitE and MitB: Formation of N-acetylglucosaminyl-3-amino-5-hydroxybenzoyl-MmcB as a key intermediate in the biosynthesis of antitumor antibiotic mitomycins2019

    • Author(s)
      Ogasawara Yasushi、Nakagawa Yo、Maruyama Chitose、Hamano Yoshimitsu、Dairi Tohru
    • Journal Title

      Bioorganic & Medicinal Chemistry Letters

      Volume: 29 Issue: 16 Pages: 2076-2078

    • DOI

      10.1016/j.bmcl.2019.07.009

    • NAID

      120007132051

    • Related Report
      2019 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] New enzymes for peptide biosynthesis in microorganisms2019

    • Author(s)
      Ogasawara Yasushi
    • Journal Title

      Bioscience, Biotechnology, and Biochemistry

      Volume: 83 Issue: 4 Pages: 589-597

    • DOI

      10.1080/09168451.2018.1559028

    • Related Report
      2018 Research-status Report
  • [Journal Article] Biosynthetic Gene Cluster of a D-Tryptophan-Containing Lasso Peptide, MS-2712018

    • Author(s)
      Feng Zhi、Ogasawara Yasushi、Nomura Satoshi、Dairi Tohru
    • Journal Title

      ChemBioChem

      Volume: 19 Issue: 19 Pages: 2045-2048

    • DOI

      10.1002/cbic.201800315

    • NAID

      120006727595

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Open Access
  • [Presentation] 三員環構造を有するペプチド抗生物質ベラクトシンとホルマオマイシンの生合成研究2022

    • Author(s)
      島谷 諒、大利 徹、小笠原 泰志
    • Organizer
      日本農芸化学会2022年度大会
    • Related Report
      2021 Annual Research Report
  • [Presentation] ラッソペプチドRES-701 の生合成研究2022

    • Author(s)
      山谷 優花、小笠原 泰志、佐藤 康治、大利 徹
    • Organizer
      日本農芸化学会2022年度大会
    • Related Report
      2021 Annual Research Report
  • [Presentation] Involvement of Peptide Epimerization in the biosynthesis of Linaridin Class Ribosomally Synthesized and Post-translationally Modified Peptides2022

    • Author(s)
      Wanlu Xiao、Yasushi Ogasawara、Yasuharu Satoh、Tohru Dairi
    • Organizer
      日本農芸化学会2022年度大会
    • Related Report
      2021 Annual Research Report
  • [Presentation] New peptide epimerase in the biosynthesis of a D-tryptophan-containing lasso peptide, MS-2712021

    • Author(s)
      Yasushi Ogasawara and Tohru Dairi
    • Organizer
      Directing Biosynthesis Online
    • Related Report
      2021 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 三員環構造を有するペプチド抗生物質ベラクトシンとホルマオマイシンの生合成研究2021

    • Author(s)
      島谷 諒, 大利 徹, 小笠原 泰志
    • Organizer
      2021 年度 日本農芸化学会北海道支部第2 回学術講演会
    • Related Report
      2021 Annual Research Report
  • [Presentation] Linaridin natural products containing D-amino acids2021

    • Author(s)
      Wanlu Xiao, Yasushi Ogasawara, and Tohru Dairi
    • Organizer
      2021 年度 日本農芸化学会北海道支部第2 回学術講演会
    • Related Report
      2021 Annual Research Report
  • [Presentation] In vitro characterization of early steps in the biosynthesis of antitumor antibiotics mitomycins2021

    • Author(s)
      Yasushi Ogasawara, Yo Nakagawa, Chitose Maruyama, Yoshimitsu Hamano and Tohru Dairi
    • Organizer
      PacifiChem 2021
    • Related Report
      2021 Annual Research Report
  • [Presentation] Dissecting the biosynthetic machinery in bacterial polyunsaturated fatty acid synthases2021

    • Author(s)
      Yasushi Ogasawara and Tohru Dairi
    • Organizer
      2022 Canadian Lipids and Proteins Conference
    • Related Report
      2021 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] ポリグルタミン酸生合成におけるエピメリ化酵素の同定2020

    • Author(s)
      ○加藤陽菜多、小笠原泰志、大利徹
    • Organizer
      2020年度日本農芸化学会北海道支部/第50回日本栄養・食料学会北海道支部合同学術講演会
    • Related Report
      2020 Research-status Report
  • [Presentation] 新規ATP依存ペプチドエピメラーゼMurLの反応機構解析2020

    • Author(s)
      ○中尾優文、小笠原泰志、佐藤康治、大利徹
    • Organizer
      2020年度日本農芸化学会北海道支部/第50回日本栄養・食料学会北海道支部合同学術講演会
    • Related Report
      2020 Research-status Report
  • [Presentation] Identification and Characterization of the Peptide Epimerase Catalyzing Isomerization of the C-terminal L-Tryptophan Residue in the Biosynthesis of Lasso Peptide, MS-2712020

    • Author(s)
      ○Zhi Feng, Yasushi Ogasawara, and Tohru Dairi
    • Organizer
      2020年度日本農芸化学会北海道支部/第50回日本栄養・食料学会北海道支部合同学術講演会
    • Related Report
      2020 Research-status Report
  • [Presentation] 抗腫瘍抗生物質マイトマイシンの生合成解析2020

    • Author(s)
      ○中川陽、小笠原泰志、大利徹
    • Organizer
      2020年度日本農芸化学会北海道支部/第50回日本栄養・食料学会北海道支部合同学術講演会
    • Related Report
      2020 Research-status Report
  • [Presentation] ポリグルタミン酸生合成におけるエピメリ化酵素の同定2020

    • Author(s)
      ○加藤陽菜多、小笠原泰志、大利徹
    • Organizer
      日本農芸化学会2021年度大会
    • Related Report
      2020 Research-status Report
  • [Presentation] 新規ATP依存ペプチドエピメラーゼMurLの反応機構解析2020

    • Author(s)
      ○中尾優文、小笠原泰志、佐藤康治、大利徹
    • Organizer
      日本農芸化学会2021年度大会
    • Related Report
      2020 Research-status Report
  • [Presentation] Identification and Characterization of a Novel Peptide Epimerase Responsible for the C-terminal D-Tryptophan Introduction in the Biosynthesis of Lasso Peptide, MS-2712020

    • Author(s)
      ○Zhi Feng, Yasushi Ogasawara, and Tohru Dairi
    • Organizer
      日本農芸化学会2021年度大会
    • Related Report
      2020 Research-status Report
  • [Presentation] 抗腫瘍抗生物質マイトマイシンの生合成解析2020

    • Author(s)
      ○中川陽、小笠原泰志、大利徹
    • Organizer
      日本農芸化学会2021年度大会
    • Related Report
      2020 Research-status Report
  • [Presentation] 植物病原菌に見出した新規ペプチドグリカン生合成経路2020

    • Author(s)
      ○小笠原泰志、大利徹
    • Organizer
      第6回北大部局横断シンポジウム
    • Related Report
      2020 Research-status Report
    • Invited
  • [Presentation] Investigation of a novel epimerase in the biosynthesis of D-tryptophan containing lasso peptide, MS-2712020

    • Author(s)
      ○Zhi Feng, Yasushi Ogasawara, and Tohru Dairi
    • Organizer
      2020年日本農芸化学会大会、福岡
    • Related Report
      2019 Research-status Report
  • [Presentation] Involvement of peptide epimerization in poly-gamma-glutamic acid biosynthesis2019

    • Author(s)
      ○Yasushi Ogasawara, Mayuko Shigematsu, Shota Sato, Hinata Kato, and Tohru Dairi
    • Organizer
      SIMB annual meeting, Washington DC
    • Related Report
      2019 Research-status Report
    • Int'l Joint Research
  • [Presentation] Biosynthetic Gene Cluster of a D-Tryptophan-Containing Lasso Peptide, MS-2712019

    • Author(s)
      ○Zhi Feng, Yasushi Ogasawara, Satoshi Nomura, Tohru Dairi
    • Organizer
      International Symposium on Biopolymer Synthesis and Degradation, Sapporo
    • Related Report
      2019 Research-status Report
    • Int'l Joint Research
  • [Presentation] ペプチドグリカン新規生合成経路阻害剤の探索2019

    • Author(s)
      ○清水庸平、佐藤洋平、小笠原泰志、米田友貴、猪熊泰英、大利徹
    • Organizer
      第34回日本放線菌学会大会、札幌
    • Related Report
      2019 Research-status Report
  • [Presentation] Biosynthetic Gene Cluster of a D-Tryptophan-Containing Lasso Peptide, MS-2712019

    • Author(s)
      ○Zhi Feng, Yasushi Ogasawara, Satoshi Nomura, Tohru Dairi
    • Organizer
      Chemical Biology and Drug Discovery. Cold Spring HarborAsia Conferences, Suzhou, China
    • Related Report
      2019 Research-status Report
    • Int'l Joint Research
  • [Presentation] ポリグルタミン酸生合成における新規エピメリ化反応2019

    • Author(s)
      ○佐藤将太、重松真由子、加藤陽菜多、小笠原泰志、大利徹
    • Organizer
      第71回日本生物工学会大会、岡山
    • Related Report
      2019 Research-status Report
  • [Presentation] Exploration of futalosine pathway specific inhibitors2019

    • Author(s)
      ○Yohei Shimizu, Kensuke Kondo, Yohei Sato, Yasushi Ogasawara and Tohru Dairi
    • Organizer
      International Symposium on Biopolymer Synthesis and Degradation, Sapporo
    • Related Report
      2019 Research-status Report
    • Int'l Joint Research
  • [Presentation] An unprecedented glutamate epimerase for bacterial peptidoglycan biosynthesis.2018

    • Author(s)
      Ruoyin Feng, Yasuharu Sato, Yasushi Ogasawara, and Tohru Dairi.
    • Organizer
      3rd European Conference on Natural Products
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research
  • [Presentation] New Enzymes for Peptide Biosynthesis in Microorganisms.2018

    • Author(s)
      Yasushi Ogasawara and Tohru Dairi
    • Organizer
      Japanese-German Symposium
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] Biosynthetic Gene Cluster of a-D-Tryptophan Containing Lasso Peptide, MS-2712018

    • Author(s)
      Zhi Feng, Yasushi Ogasawara, Satoshi Nomura and Tohru Dairi
    • Organizer
      日本放線菌学会大会
    • Related Report
      2018 Research-status Report
  • [Presentation] ペプチド天然物の生合成に関わる新規酵素の探索2018

    • Author(s)
      小笠原 泰志
    • Organizer
      日本農芸化学会北海道支部・東北支部 合同支部大会
    • Related Report
      2018 Research-status Report
    • Invited
  • [Presentation] 微生物に見出したペプチドグリカン新規生合成酵素の解析2018

    • Author(s)
      馮若茵、佐藤康治、小笠原泰志、森田洋行、吉村徹、大利徹
    • Organizer
      第60回 天然有機化合物討論会
    • Related Report
      2018 Research-status Report
  • [Presentation] Recognition mechanism of substrate chirality in UDP-MurNAc-L-Ala-Glu synthetase2018

    • Author(s)
      Ruoyin FENG, Yasuharu SATOH, Hiroyuki MORITA, Yasushi OGASAWARA, Tohru DAIRI
    • Organizer
      2019年度 農芸化学会大会
    • Related Report
      2018 Research-status Report
  • [Presentation] Biosynthetic Gene Cluster of a D-Tryptophan-Containing Lasso Peptide, MS-2712018

    • Author(s)
      Zhi FENG, Yasushi OGASAWARA, Satoshi NOMURA, Tohru DAIRI
    • Organizer
      2019年度 農芸化学会大会
    • Related Report
      2018 Research-status Report

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Published: 2018-04-23   Modified: 2023-01-30  

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