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Elucidation of sequence features of plant core promoter

Research Project

Project/Area Number 18K05555
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Review Section Basic Section 38060:Applied molecular and cellular biology-related
Research InstitutionNara Institute of Science and Technology

Principal Investigator

Kato Ko  奈良先端科学技術大学院大学, 先端科学技術研究科, 教授 (80283935)

Project Period (FY) 2018-04-01 – 2021-03-31
Project Status Completed (Fiscal Year 2020)
Budget Amount *help
¥4,420,000 (Direct Cost: ¥3,400,000、Indirect Cost: ¥1,020,000)
Fiscal Year 2020: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Fiscal Year 2019: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Fiscal Year 2018: ¥650,000 (Direct Cost: ¥500,000、Indirect Cost: ¥150,000)
Keywords植物コアプロモーター / 転写開始点 / 転写効率 / 翻訳効率 / イニシエーター / ゲノムワイド解析 / コアプロモーター / 植物
Outline of Final Research Achievements

It is known that among eukaryotic promoters, TATA-box (TATA), initiator (Inr), TFIIB-Recognition Element (BRE), etc. exist as core promoters. The core promoter is in demand for transcription initiation by RNA polymerase II. On the other hand, the current situation is that there is little knowledge about plant core promoters.
In this study, the effects of various core promoter elements on mRNA transcription were evaluated in detail in plants in vivo. As a result, it was shown that TATA-box, YR rule, and T-rich sequence are important for determining the transcription start point and transcription efficiency.

Academic Significance and Societal Importance of the Research Achievements

本研究で得られた成果は、今後の植物コアプロモーターの研究での重要な基礎となる知見を提供するものと考えられる。またこの知見を活用することで、コアプロモーターの改良による転写活性の増大が可能となり、植物で有用遺伝子を更に高発現させる上でも有用なものである。

Report

(4 results)
  • 2020 Annual Research Report   Final Research Report ( PDF )
  • 2019 Research-status Report
  • 2018 Research-status Report
  • Research Products

    (5 results)

All 2020 2019 2018

All Journal Article (1 results) (of which Peer Reviewed: 1 results) Presentation (4 results) (of which Int'l Joint Research: 1 results,  Invited: 1 results)

  • [Journal Article] Identification of 5′-untranslated regions that function as effective translational enhancers in monocotyledonous plant cells using a novel method of genome-wide analysis2018

    • Author(s)
      Yamasaki Shotaro、Suzuki Atsunobu、Yamano Yasuaki、Kawabe Harunori、Ueno Daishin、Demura Taku、Kato Ko
    • Journal Title

      Plant Biotechnology

      Volume: 35 Issue: 4 Pages: 365-373

    • DOI

      10.5511/plantbiotechnology.18.0903a

    • NAID

      130007599203

    • ISSN
      1342-4580, 1347-6114
    • Year and Date
      2018-12-25
    • Related Report
      2018 Research-status Report
    • Peer Reviewed
  • [Presentation] 植物のコアプロモーター配列の改変が遺伝子発現に及ぼす影響2020

    • Author(s)
      田中彩、山﨑将太朗、川邊陽文、西村侑美、出村拓、加藤晃
    • Organizer
      2020年度日本生物工学会関西支部学生オンライン発表会
    • Related Report
      2020 Annual Research Report
  • [Presentation] 転写開始点の決定に重要なコアプロモーター因子の解析2019

    • Author(s)
      田中彩, 山﨑将太朗, 川邊陽文, 出村拓, 加藤晃
    • Organizer
      第8回植物RNA研究ネットワークシンポジウム
    • Related Report
      2019 Research-status Report
  • [Presentation] mRNA配列から翻訳状態を説明できる数理モデル~基礎と応用~2018

    • Author(s)
      山崎将太朗、上野大心、加藤晃
    • Organizer
      第1回植物インフォマティックス研究会
    • Related Report
      2018 Research-status Report
  • [Presentation] Transgene expression system in plants optimizing translation process using informatics.2018

    • Author(s)
      Ko Kato
    • Organizer
      The 30th Annual Meeting of the Thai Society for Biotechnology
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research / Invited

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Published: 2018-04-23   Modified: 2022-01-27  

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