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Genetic analysis of dugong skeletal remains excavated from archeological sites in Okinawa.

Research Project

Project/Area Number 18K05685
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Review Section Basic Section 39060:Conservation of biological resources-related
Research InstitutionUniversity of Yamanashi

Principal Investigator

KAKUDA Tsuneo  山梨大学, 大学院総合研究部, 特任助教 (80446575)

Project Period (FY) 2018-04-01 – 2021-03-31
Project Status Completed (Fiscal Year 2020)
Budget Amount *help
¥4,420,000 (Direct Cost: ¥3,400,000、Indirect Cost: ¥1,020,000)
Fiscal Year 2020: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2019: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2018: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Keywords古代DNA / 生物多様性保全 / 海生哺乳類 / ジュゴン / 遺伝的多様性 / 基礎的遺伝情報 / 絶滅危惧生物
Outline of Final Research Achievements

The purpose of this study was to estimate the genetic diversity of ancient DNA of dugong bones excavated from archaeological sites in various parts of Okinawa. As a result of conducting experiments on bone samples excavated from archaeological sites in Okinawa Prefecture, we succeeded in extracting ancient DNA of about several tens of base pairs. Comparing this mitochondrial DNA data with the published overseas data, it was found that the SNP was different from that of other marine populations, at least except for the Philippines. On the other hand, as a result of attempting analysis by NGS, detailed analysis was difficult due to the fact that the amount of DNA recovered from the subject was much smaller than expected. In the research project from 2021, we plan to acquire and use the dugong genome data, and we believe that detailed analysis by NGS will be possible.

Academic Significance and Societal Importance of the Research Achievements

国際自然保護連合によって絶滅危惧種に指定されている本種は、各国で食性や生息域といった生態調査から、個体群や地域集団のDNA分析など活発な研究活動が幅広く行われている。一方、わが国では目視観察や鳴音探知調査といった生息状況調査の他は、環境省(2004)以降行われていなかった。現生ジュゴン最北の生息地である沖縄近海を対象とし、かつ遺跡時代の個体を対象とした本DNA分析での成果は、得られたデータは僅かであったが、遺跡骨から抽出できるDNAの状態を把握し、現在進めているNGS分析の貴重な基礎データとして活用されている。

Report

(4 results)
  • 2020 Annual Research Report   Final Research Report ( PDF )
  • 2019 Research-status Report
  • 2018 Research-status Report
  • Research Products

    (15 results)

All 2020 2019 2018 Other

All Journal Article (6 results) (of which Int'l Joint Research: 2 results,  Peer Reviewed: 6 results,  Open Access: 5 results) Presentation (3 results) (of which Invited: 1 results) Book (4 results) Remarks (1 results) Patent(Industrial Property Rights) (1 results)

  • [Journal Article] Shinohara A, IbukiI S, Kakuda T, Kameda Y. Pamphilius japonicus feeds on Cornus: the first Old World record of Pamphiliidae (Hymenoptera) associated with Cornaceae2019

    • Author(s)
      Shinohara A, IbukiI S, Kakuda T, Kameda Y
    • Journal Title

      Zootaxa

      Volume: 4585(2) Issue: 2 Pages: 343-350

    • DOI

      10.11646/zootaxa.4585.2.7

    • Related Report
      2019 Research-status Report 2018 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] 韓国加徳島項遺跡出土人骨のDNA分析2019

    • Author(s)
      篠田謙一,神澤秀明,角田恒雄,安達登
    • Journal Title

      文物 (Mumuru)

      Volume: 9 Pages: 167-206

    • Related Report
      2019 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Genetic characteristics of Yayoi people in Northwestern Kyushu2019

    • Author(s)
      篠田謙一,神澤秀明,角田恒雄,安達登
    • Journal Title

      Anthropological Science (Japanese Series)

      Volume: 127 Issue: 1 Pages: 25-43

    • DOI

      10.1537/asj.1904231

    • NAID

      130007668339

    • ISSN
      1344-3992, 1348-8813
    • Related Report
      2019 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Mitochondrial DNA analysis of the skeletal remains excavated from the old Tokijin tomb, located in the Nakijin village of Okinawa Island2019

    • Author(s)
      Shinoda K, Kakuda T, Doi N
    • Journal Title

      Bull. Natl. Mus. Nat. Sci.

      Volume: Ser. D, 44 Pages: 1-8

    • NAID

      40021883800

    • Related Report
      2018 Research-status Report
    • Peer Reviewed
  • [Journal Article] ranio-morphometric and aDNA corroboration of the Austronesian dispersal model in ancient Island Southeast Asia: Support from Gua Harimau, Indonesia2018

    • Author(s)
      Matsumura H, Shinoda K, Shimanjuntak T, Oktaviana A A, Noerwidi S, SofianH O, Prastiningtyas D, NguyenL C, Kakuda T, Kanzawa-Kiriyama H, Adachi N, Hung H-C, Fan X, Wu X, Willis A and Oxenham MF
    • Journal Title

      PLoS One

      Volume: 13(6) Issue: 6 Pages: 1-25

    • DOI

      10.1371/journal.pone.0198689

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] DNA Barcodes Identify the Larvae and Unassociated Male of Three Onycholyda Sawflies (Hymenoptera, Pamphiliidae) from China2018

    • Author(s)
      Shinohara A, Kakuda T, Wei M, Kameda Y
    • Journal Title

      Zootaxa

      Volume: 4403(1) Issue: 1 Pages: 123-132

    • DOI

      10.11646/zootaxa.4403.1.7

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Presentation] ミトコンドリアDNA分析からみた日本人の起源2019

    • Author(s)
      角田恒雄
    • Organizer
      湘南ひらつかキャンパス開設30年記念 理学部・理学研究科卒業生による講演会(第4回)
    • Related Report
      2019 Research-status Report
    • Invited
  • [Presentation] 新規プライマーセットを用いた高感度性別判定法の開発2019

    • Author(s)
      藤本佳那, 藤井元人, 猩々英紀, 角田恒雄,上木耕一郎, 安達登
    • Organizer
      日本DNA多型学会第28回学術集会
    • Related Report
      2019 Research-status Report
  • [Presentation] 日本列島古代人のCPT1A欠損症関連遺伝子変異の分布2019

    • Author(s)
      安達登,神澤秀明,佐藤丈寬,角田恒雄,篠田謙一
    • Organizer
      第73回人類学会大会
    • Related Report
      2019 Research-status Report
  • [Book] 真珠道跡・松崎馬場跡 沖縄県立埋蔵文化財センター調査報告書2020

    • Author(s)
      篠田謙一,神澤秀明,安達登,角田恒雄,土肥直美
    • Publisher
      沖縄県立埋蔵文化財センター
    • Related Report
      2019 Research-status Report
  • [Book] 国立歴史民俗博物館研究報告 第219集2020

    • Author(s)
      篠田謙一,神澤秀明,角田恒雄,安達登,土肥直美
    • Publisher
      国立歴史民俗博物館
    • Related Report
      2019 Research-status Report
  • [Book] 平成30年度 千葉県旭市内発掘調査報告書 後田遺跡2019

    • Author(s)
      神澤英明、角田恒雄
    • Publisher
      旭市教育委員会
    • Related Report
      2018 Research-status Report
  • [Book] 良文貝塚出土遺物報告書2019

    • Author(s)
      神澤英明、角田恒雄
    • Publisher
      香取市教育委員会
    • Related Report
      2018 Research-status Report
  • [Remarks]

    • URL

      https://www.med.yamanashi.ac.jp/social/legal0me/

    • Related Report
      2018 Research-status Report
  • [Patent(Industrial Property Rights)] 核酸抽出装置 及び核酸抽出方法2020

    • Inventor(s)
      石原敬三、赤池東、細谷明宏、安達登、角田恒雄、田中隆弘
    • Industrial Property Rights Holder
      石原敬三、赤池東、細谷明宏、安達登、角田恒雄、田中隆弘
    • Industrial Property Rights Type
      特許
    • Industrial Property Number
      2020-029141
    • Filing Date
      2020
    • Related Report
      2019 Research-status Report

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Published: 2018-04-23   Modified: 2022-01-27  

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