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Structural analysis of chaperone complex for the IgM assembly

Research Project

Project/Area Number 18K06075
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Review Section Basic Section 43020:Structural biochemistry-related
Research InstitutionTohoku University

Principal Investigator

Watanabe Satoshi  東北大学, 多元物質科学研究所, 助教 (50432357)

Project Period (FY) 2018-04-01 – 2022-03-31
Project Status Completed (Fiscal Year 2021)
Budget Amount *help
¥4,420,000 (Direct Cost: ¥3,400,000、Indirect Cost: ¥1,020,000)
Fiscal Year 2020: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2019: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2018: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Keywordsカーゴ受容体 / クライオ電子顕微鏡 / シャペロン / カーゴレセプター / 構造解析 / タンパク質品質管理 / 構造生物 / X線結晶構造解析 / 電子顕微鏡
Outline of Final Research Achievements

Immunoglobulin M (IgM) is secreted as a pentamer or hexamer formed by by disulfide bonds. In this study, we have investigated the structural and functional analysis of ERGIC-53, a cargo receptor involved in the biosynthesis of IgM, and determined its full-length structure by cryo-EM single-particle analysis. ERp44, a chaperone protein is also involved in the maturation of IgM monomers. We revealed the zinc-based substrate dissociation mechanism of ERp44. In addition, we have solved a cryo-EM structure of a complex between ERp44 and its client proteins, revealing molecular basis of its substrate recognition.

Academic Significance and Societal Importance of the Research Achievements

本研究の結果、長年未解明であったERGIC-53の全長構造をクライオ電顕単粒子解析によって明らかにすることができた。構造解析によって血液凝固第V因子などの積荷の詳細な結合部位が明らかになり、また長いストーク領域を利用した効率的な輸送機構が明らかになった。これらの構造情報は、抗血液凝固薬の開発の基盤になることが期待できる。

Report

(5 results)
  • 2021 Annual Research Report   Final Research Report ( PDF )
  • 2020 Research-status Report
  • 2019 Research-status Report
  • 2018 Research-status Report
  • Research Products

    (13 results)

All 2021 2020 2019 2018 Other

All Journal Article (1 results) (of which Int'l Joint Research: 1 results,  Peer Reviewed: 1 results,  Open Access: 1 results) Presentation (10 results) (of which Int'l Joint Research: 2 results,  Invited: 3 results) Book (1 results) Remarks (1 results)

  • [Journal Article] Zinc regulates ERp44-dependent protein quality control in the early secretory pathway2019

    • Author(s)
      Watanabe Satoshi、Amagai Yuta、Sannino Sara、Tempio Tiziana、Anelli Tiziana、Harayama Manami、Masui Shoji、Sorrentino Ilaria、Yamada Momo、Sitia Roberto、Inaba Kenji
    • Journal Title

      Nature Communications

      Volume: 10 Issue: 1 Pages: 1-16

    • DOI

      10.1038/s41467-019-08429-1

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Presentation] 亜鉛に依存したERp44-クライアント複合体の解離機構の解明2021

    • Author(s)
      渡部 聡 三宅杏美子 天貝佑太 稲葉謙次
    • Organizer
      第21回蛋白質科学会年会
    • Related Report
      2021 Annual Research Report
  • [Presentation] Correlative structural analysis of a full-length cargo receptor ERGIC-53 in complex with its partner MCFD22021

    • Author(s)
      Watanabe, S., Kise, Y., Yonezawa, K., Shimizu, N., Nureki, O. and Inaba, K
    • Organizer
      第59回生物物理学会年会
    • Related Report
      2021 Annual Research Report
  • [Presentation] 全長カーゴ受容体ERGIC-53と補助因子MCFD2との複合体のクライオ電顕構造2021

    • Author(s)
      渡部 聡、木瀬孔明、米澤健人、清水伸隆、濡木理、稲葉謙次
    • Organizer
      第44回日本分子生物学会年会
    • Related Report
      2021 Annual Research Report
  • [Presentation] A new role of cellular zinc for protein quality control in the early secretory pathway2020

    • Author(s)
      Satoshi Watanabe, Yuta Amagai, Sara Sannino, Amiko Miyake, Roberto Sitia, and Kenji Inab
    • Organizer
      第20回蛋白質科学会年会
    • Related Report
      2020 Research-status Report
  • [Presentation] 亜鉛輸送体によるゴルジ体の亜鉛制御が ERp44機能を調節する2020

    • Author(s)
      天貝佑太, 山田桃, 小和田俊行, 渡邊朝美, 楢本悟史, 渡部聡, 経塚淳子, 水上進, Roberto Sitia, 稲葉謙次
    • Organizer
      第72回日本細胞生物学会大会
    • Related Report
      2020 Research-status Report
  • [Presentation] 小胞体における亜鉛結合性シャペロンERp44とクライアントとの複合体の解離機構の生化学的解析2020

    • Author(s)
      三宅杏美子,渡部 聡,天貝佑太,稲葉謙次
    • Organizer
      第43回日本分子生物学会
    • Related Report
      2020 Research-status Report
  • [Presentation] Structural basis of zinc-dependent protein quality control in the early secretory pathway2019

    • Author(s)
      渡部 聡
    • Organizer
      Gordon Research Conference, Cell Biology of Metals
    • Related Report
      2019 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] 亜鉛イオンとシャペロンタンパク質ERp44による新たなタンパク質品質管理機構2019

    • Author(s)
      渡部 聡, 天貝佑太, 山田桃, Roberto Sitia, 稲葉謙次
    • Organizer
      第19回日本蛋白質科学会年会
    • Related Report
      2019 Research-status Report
    • Invited
  • [Presentation] Structural basis of pH- and zinc-dependent multiple client recognition by ERp442018

    • Author(s)
      Watanabe S., Amagai Y. Sitia R. Inaba K
    • Organizer
      第56回日本生物物理学会年会
    • Related Report
      2018 Research-status Report
    • Invited
  • [Presentation] Structural basis of zinc-dependent ERp44 regulation for protein quality control in the early secretory pathway2018

    • Author(s)
      Satoshi Watanabe, Yuta Amagai, Sara Sannino, Manami Harayama, Shoji Masui, Momo Yamada, Roberto Sitia, and Kenji Inaba
    • Organizer
      International Symposium on “Proteins; from the Cradle to the Grave
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research
  • [Book] イメージング時代の構造生命科学2020

    • Author(s)
      天貝佑太, 渡部 聡、稲葉謙次
    • Total Pages
      248
    • Publisher
      羊土社
    • Related Report
      2019 Research-status Report
  • [Remarks] 細胞内の亜鉛の新しい生理的役割が明らかに

    • URL

      http://www2.tagen.tohoku.ac.jp/lab/news_press/20190213/

    • Related Report
      2018 Research-status Report

URL: 

Published: 2018-04-23   Modified: 2023-01-30  

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