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Structural study of the PCAF-HD domain of GCN5 to reveal signaling in hepatic glucogenesis

Research Project

Project/Area Number 18K06077
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Review Section Basic Section 43020:Structural biochemistry-related
Research InstitutionNara Institute of Science and Technology

Principal Investigator

Toma-Fukai Sachiko  奈良先端科学技術大学院大学, 先端科学技術研究科, 准教授 (40363535)

Project Period (FY) 2018-04-01 – 2022-03-31
Project Status Completed (Fiscal Year 2021)
Budget Amount *help
¥4,420,000 (Direct Cost: ¥3,400,000、Indirect Cost: ¥1,020,000)
Fiscal Year 2020: ¥1,040,000 (Direct Cost: ¥800,000、Indirect Cost: ¥240,000)
Fiscal Year 2019: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2018: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
KeywordsX線結晶構造解析 / ユビキチン / ユビキチンE3リガーゼ / 構造生物学 / 結晶構造解析 / ユビキチンリガーゼ / 構造生物 / X線結晶構造解析 / ポリユビキチン化反応 / 翻訳後修飾酵素 / 創薬
Outline of Final Research Achievements

Hepatic gluconeogenesis is an issue in patients with type 2 diabetes, but the details of the signaling mechanism are unknown. The expression of genes in the glycogenic enzyme group causes glycogenesis. Previously it was reported that histone acetyltransferase GCN5 is one of the enzymes involved in hepatic glycogenesis, but the full extent of this mechanism has not been clarified.
GCN5 has a domain presumed to have ubiquitin E3 activity, named PCAF_N. We focused our structural studies on a novel catalytic activity, E3 activity, of GCN5, an acetyltransferase involved in glycogenesis. As a result, we revealed that PCAF_N is an E3 enzyme with a novel fold.

Academic Significance and Societal Importance of the Research Achievements

アセチル化やユビキチン化は蛋白質合成後に起こる翻訳後修飾である。シグナル伝達において翻訳後修飾は互いに競合または協調しながら多様な情報を伝える。本研究では、GCN5のE3活性機構の解明はGCN5が分解シグナルを誘導するという全く新しい機能を立体構造から解明した。これは、GCN分子が持つ未知シグナル伝達の可能性を示し、GCN5が担う糖新生シグナルの解明に貢献する学術的意義、社会的意義のある研究成果である。

Report

(5 results)
  • 2021 Annual Research Report   Final Research Report ( PDF )
  • 2020 Research-status Report
  • 2019 Research-status Report
  • 2018 Research-status Report
  • Research Products

    (18 results)

All 2021 2020 2019 2018 Other

All Journal Article (3 results) (of which Peer Reviewed: 2 results,  Open Access: 2 results) Presentation (11 results) (of which Int'l Joint Research: 4 results,  Invited: 3 results) Remarks (4 results)

  • [Journal Article] Structural Diversity of Ubiquitin E3 Ligase2021

    • Author(s)
      Toma-Fukai Sachiko、Shimizu Toshiyuki
    • Journal Title

      Molecules

      Volume: 26 Issue: 21 Pages: 6682-6682

    • DOI

      10.3390/molecules26216682

    • Related Report
      2021 Annual Research Report
  • [Journal Article] Crystal structure of GCN5 PCAF N-terminal domain reveals atypical ubiquitin ligase structure2020

    • Author(s)
      Toma-Fukai Sachiko、Hibi Ryota、Naganuma Takao、Sakai Mashito、Saijo Shinya、Shimizu Nobutaka、Matsumoto Michihiro、Shimizu Toshiyuki
    • Journal Title

      Journal of Biological Chemistry

      Volume: 295 Issue: 43 Pages: 14630-14639

    • DOI

      10.1074/jbc.ra120.013431

    • Related Report
      2020 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] GEF mechanism revealed by the structure of SmgGDS-558 and farnesylated RhoA complex and its implication for a chaperone mechanism2018

    • Author(s)
      Shimizu Hikaru、Toma-Fukai Sachiko、Kontani Kenji、Katada Toshiaki、Shimizu Toshiyuki
    • Journal Title

      Proceedings of the National Academy of Sciences

      Volume: 115 Issue: 38 Pages: 9563-9568

    • DOI

      10.1073/pnas.1804740115

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Open Access
  • [Presentation] Crystal structure of GCN5 PCAF-homology domain reveals atypical ubiquitin ligase structure2020

    • Author(s)
      日比亮太, 藤間祥子, 酒井真志人, 長沼孝雄, 松本道宏, 清水敏之
    • Organizer
      第93 回日本生化学会大会(2020年)
    • Related Report
      2020 Research-status Report
  • [Presentation] Crystal structure of PCAF homology domain of GCN5 reveals its unique structure as ubiquitin E3 ligase2019

    • Author(s)
      Sachiko TOMA-FUKAI, Ryota HIBI, Mashito SAKAI, Takao NAGANUMA, Shinya SAIJO, Nobutaka SHIMIZU, Michihiro MATSUMOTO, and Toshiyuki SHIMIZU
    • Organizer
      AsCA2019
    • Related Report
      2019 Research-status Report
    • Int'l Joint Research
  • [Presentation] Crystal structure of PCAF homology domain of GCN5 reveals its unique structure as ubiquitin E3 ligase2019

    • Author(s)
      Sachiko TOMA-FUKAI, Ryota HIBI, Mashito SAKAI, Takao NAGANUMA, Shinya SAIJO, Nobutaka SHIMIZU, Michihiro MATSUMOTO, and Toshiyuki SHIMIZU
    • Organizer
      International Symposium on Diffraction Structural Biology 2019
    • Related Report
      2019 Research-status Report
    • Int'l Joint Research
  • [Presentation] 創薬標的蛋白質のPX-BioSAXS相関構造解析の現状と今後の展望2019

    • Author(s)
      藤間 祥子
    • Organizer
      日本プロテオーム学会2019年大会 第70回日本電気泳動学会総会(JPrOS・JES2019)
    • Related Report
      2019 Research-status Report
    • Invited
  • [Presentation] Crystal structure of PCAF‐homology domain of GCN5 reveals its unique structure as ubiquitin E3 ligase2018

    • Author(s)
      Ryota HIBI, Sachiko TOMA-FUKAI, Mashito SAKAI, Takao NAGANUMA, Michihiro MATSUMOTO, Toshiyuki SHIMIZU
    • Organizer
      AsCA 2018
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research
  • [Presentation] 細胞内創薬標的蛋白質の PX-BioSAXSを用いた構造機能相関解析2018

    • Author(s)
      藤間祥子
    • Organizer
      PF研究会 多様な物質・生命科学研究に広がる小角散乱(他)分野の小角散乱を学ぼう!
    • Related Report
      2018 Research-status Report
    • Invited
  • [Presentation] 新規ユビキチンE3リガーゼドメインmGCN5 PCAF-HDの結晶構造解析2018

    • Author(s)
      日比亮太, 藤間祥子, 酒井真志人, 長沼孝雄, 松本道宏, 清水敏之
    • Organizer
      日本結晶学会年会
    • Related Report
      2018 Research-status Report
  • [Presentation] リード化合物創成を目指した創薬標的蛋白質の構造機能相関解析2018

    • Author(s)
      藤間祥子
    • Organizer
      平成30年度第2回構造生物学研究会
    • Related Report
      2018 Research-status Report
    • Invited
  • [Presentation] 新規E3フォールド酵素PCAF-HDの構造科学研究2018

    • Author(s)
      日比亮太, 藤間祥子, 酒井真志人, 長沼孝雄, 松本道宏, 清水敏之
    • Organizer
      日本薬学会 第139年会 (千葉)
    • Related Report
      2018 Research-status Report
  • [Presentation] Structural basis of RhoA recognition by unique guanine nucleotide exchange factor SmgGDS2018

    • Author(s)
      Hikaru SHIMIZU, Sachiko TOMA-FUKAI, Nobutaka SHIMIZU, Shinya SAIJO, Toshiaki KATADA, and Toshiyuki SHIMIZU
    • Organizer
      AsCA 2018
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research
  • [Presentation] 特異なグアニンヌクレオチド交換因子SmgGDSによるRhoA認識機構の構造基盤2018

    • Author(s)
      清水光, 藤間祥子, 紺谷圈二, 堅田利明, 清水敏之
    • Organizer
      PPF2018
    • Related Report
      2018 Research-status Report
  • [Remarks]

    • URL

      http://www.f.u-tokyo.ac.jp/topics.html?page=1&key=1536299827

    • Related Report
      2018 Research-status Report
  • [Remarks]

    • URL

      http://www.spring8.or.jp/ja/news_publications/press_release/2018/180907/

    • Related Report
      2018 Research-status Report
  • [Remarks]

    • URL

      http://pfwww.kek.jp/publications/pfnews/36_2/saikin1.pdf

    • Related Report
      2018 Research-status Report
  • [Remarks]

    • URL

      http://www.f.u-tokyo.ac.jp/~kouzou/

    • Related Report
      2018 Research-status Report

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Published: 2018-04-23   Modified: 2023-01-30  

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