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Structural and functional analyses of the respiratory terminal enzymes for elucidation of the proton pump mechanism

Research Project

Project/Area Number 18K06162
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Review Section Basic Section 43040:Biophysics-related
Research InstitutionUniversity of Hyogo

Principal Investigator

Muramoto Kazumasa  兵庫県立大学, 生命理学研究科, 准教授 (50305679)

Project Period (FY) 2018-04-01 – 2021-03-31
Project Status Completed (Fiscal Year 2020)
Budget Amount *help
¥4,420,000 (Direct Cost: ¥3,400,000、Indirect Cost: ¥1,020,000)
Fiscal Year 2020: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2019: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2018: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Keywords生体エネルギー / 生物物理 / 呼吸鎖 / 膜蛋白質 / 酵素 / X線結晶解析 / 電顕単粒子解析 / ナノバイオ / 蛋白質
Outline of Final Research Achievements

Respiratory chains in mitochondrial and bacterial membrane transfer hydrogen ions (protons) by using energy released from the redox reaction (electron transfer), and efficiently generates energy available for the life. To understand the energy transduction mechanism of the respiratory terminal enzymes, I studied molecular structure and function of mitochondrial cytochrome c oxidase and bacterial nitric oxide reductases. The resolution of structural analysis was improved. The results showed structural changes of the enzymes depending on the reaction with the substrates and inhibitors, and indicated the regulation mechanism of enzymatic activity depending on the monomerization/dimerization of enzyme.

Academic Significance and Societal Importance of the Research Achievements

呼吸鎖酵素は生体膜を介したプロトン移動による効率的なエネルギー変換を行う。ミトコンドリア呼吸鎖の代謝異常は活性酸素産生などに関係する。病原菌の呼吸鎖酵素は宿主免疫系から菌体を守る働きを担う。本研究では呼吸鎖酵素のエネルギー変換機構に関して分子レベルでの知見が得られたとともに、これらの知見は高効率なエネルギー変換素子の構築、代謝異常のメカニズム解明、病原菌に対する薬剤の創出につながることが期待される。

Report

(4 results)
  • 2020 Annual Research Report   Final Research Report ( PDF )
  • 2019 Research-status Report
  • 2018 Research-status Report
  • Research Products

    (20 results)

All 2021 2020 2019 2018 Other

All Journal Article (6 results) (of which Int'l Joint Research: 1 results,  Peer Reviewed: 6 results,  Open Access: 4 results) Presentation (13 results) (of which Int'l Joint Research: 3 results) Remarks (1 results)

  • [Journal Article] The 1.3-angstrom resolution structure of bovine cytochrome c oxidase suggests a dimerization mechanism2021

    • Author(s)
      Shinzawa-Itoh Kyoko、Hatanaka Miki、Fujita Kazuya、Yano Naomine、Ogasawara Yumi、Iwata Jun、Yamashita Eiki、Tsukihara Tomitake、Yoshikawa Shinya、Muramoto Kazumasa
    • Journal Title

      BBA Advances

      Volume: 1 Pages: 100009-100009

    • DOI

      10.1016/j.bbadva.2021.100009

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Crystal Structure of an Active Form of Monomeric Cytochrome <i>c</i> Oxidase from Bovine Heart2020

    • Author(s)
      SHINZAWA-ITOH Kyoko、MURAMOTO Kazumasa
    • Journal Title

      Seibutsu Butsuri

      Volume: 60 Issue: 5 Pages: 276-279

    • DOI

      10.2142/biophys.60.276

    • NAID

      130007919220

    • ISSN
      0582-4052, 1347-4219
    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] X-ray structures of catalytic intermediates of cytochrome c oxidase provide insights into its O2 activation and unidirectional proton-pump mechanisms2020

    • Author(s)
      A. Shimada, Y. Etoh, R. Kitoh-Fujisawa, A. Sasaki, K. Shinzawa-Itoh, T. Hiromoto, E. Yamashita, K. Muramoto, T. Tsukihara, S. Yoshikawa
    • Journal Title

      J. Biol. Chem.

      Volume: 295 Issue: 17 Pages: 5818-5833

    • DOI

      10.1074/jbc.ra119.009596

    • Related Report
      2019 Research-status Report
    • Peer Reviewed
  • [Journal Article] The active form of quinol-dependent nitric oxide reductase from Neisseria meningitidis is a dimer2020

    • Author(s)
      Jamali M. Arif M.、Gopalasingam Chai C.、Johnson Rachel M.、Tosha Takehiko、Muramoto Kazumasa、Muench Stephen P.、Antonyuk Svetlana V.、Shiro Yoshitsugu、Hasnain Samar S.
    • Journal Title

      IUCrJ

      Volume: 7 Issue: 3 Pages: 404-415

    • DOI

      10.1107/s2052252520003656

    • Related Report
      2019 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Monomeric structure of an active form of bovine cytochrome c oxidase2019

    • Author(s)
      Shinzawa-Itoh Kyoko、Sugimura Takashi、Misaki Tomonori、Tadehara Yoshiki、Yamamoto Shogo、Hanada Makoto、Yano Naomine、Nakagawa Tetsuya、Uene Shigefumi、Yamada Takara、Aoyama Hiroshi、Yamashita Eiki、Tsukihara Tomitake、Yoshikawa Shinya、Muramoto Kazumasa
    • Journal Title

      Proceedings of the National Academy of Sciences

      Volume: 116 Issue: 40 Pages: 19945-19951

    • DOI

      10.1073/pnas.1907183116

    • Related Report
      2019 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] X-ray structural analyses of azide-bound cytochrome c oxidases reveal that the H-pathway is critically important for the proton-pumping activity.2018

    • Author(s)
      1.Shimada A, Hatano K, Tadehara H, Yano N, Shinzawa-Itoh K, Yamashita E, Muramoto K, Tsukihara T, Yoshikawa S.
    • Journal Title

      J Biol Chem.

      Volume: 293 Issue: 38 Pages: 14868-14879

    • DOI

      10.1074/jbc.ra118.003123

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Open Access
  • [Presentation] ウシ心筋シトクロム酸化酵素の1.3Å分解能構造が示唆する二量体化機構2020

    • Author(s)
      伊藤・新澤恭子、畑中美紀、藤田和也、矢野直峰、小笠原由美、岩田淳、山下栄樹、月原冨武、吉川信也、村本和優
    • Organizer
      日本生体エネルギー研究会第45回討論会
    • Related Report
      2020 Annual Research Report
  • [Presentation] ウシミトコンドリア呼吸鎖酸素還元酵素の1.3Å分解能構造が示唆する二量体化機構2020

    • Author(s)
      伊藤・新澤恭子、畑中美紀、藤田和也、矢野直峰、小笠原由美、岩田淳、山下栄樹、月原冨武、吉川信也、村本和優
    • Organizer
      日本生物物理学会第58回年会
    • Related Report
      2020 Annual Research Report
  • [Presentation] O2-activation and unidirectional proton-pump mechanisms of cytochrome c oxidase elucidated by X-ray structures of its catalytic intermediates2020

    • Author(s)
      島田敦広、伊藤・新澤恭子、山下栄樹、村本和優、月原冨武、吉川信也
    • Organizer
      第20回日本蛋白質科学会年会
    • Related Report
      2020 Annual Research Report
  • [Presentation] Cryo-EM, Crystallographic and kinetic study of quinol-dependent nitric oxide reductases from Neisseria Meninigitidis.2020

    • Author(s)
      M. Arif M. Jamali, C.C. Gopalasingam, R.M. Johnson, S.P. Muench, S.V. Antonyuk, S.S. Hasnain, T. Tosha, K. Muramoto, Y. Shiro
    • Organizer
      2020 World Conference on Protein Science
    • Related Report
      2020 Annual Research Report
    • Int'l Joint Research
  • [Presentation] ウシ心筋シトクロム酸化酵素の活性型単量体構造2019

    • Author(s)
      伊藤・新澤恭子、杉村高志、御前智則、蓼原吉輝、山本省吾、矢野直峰、花田真、中川徹也、上根史滋、山田聖、青山浩、山下栄樹、月原冨武、吉川信也、村本和優
    • Organizer
      日本生体エネルギー研究会第44回討論会
    • Related Report
      2019 Research-status Report
  • [Presentation] Crystallographic and cryoEM structures of quinol-dependent Nitric Oxide Reductases from Neisseria meninigtidis.2019

    • Author(s)
      M. Arif M. Jamali, C.C. Gopalasingam, R.M. Johnson, S.P. Muench, S.V. Antonyuk, S.S. Hasnain, T. Tosha, K. Muramoto and Y. Shiro.
    • Organizer
      International Symposium on Diffraction Structure Biology
    • Related Report
      2019 Research-status Report
    • Int'l Joint Research
  • [Presentation] Monomeric structure of an active form of respiratory oxygen reductase from bovine mitochondria2019

    • Author(s)
      伊藤・新澤恭子、杉村高志、御前智則、蓼原吉輝、山本省吾、矢野直峰、花田真、中川徹也、上根史滋、山田聖、青山浩、山下栄樹、月原冨武、吉川信也、村本和優
    • Organizer
      日本生物物理学会第57回年会
    • Related Report
      2019 Research-status Report
  • [Presentation] ウシチトクロム酸化酵素の活性型モノマー構造2019

    • Author(s)
      伊藤・新澤恭子、杉村高志、御前智則、蓼原吉輝、山本省吾、矢野直峰、花田真、中川徹也、上根史滋、山田聖、青山浩、山下栄樹、月原冨武、吉川信也、村本和優
    • Organizer
      第92回日本生化学会大会
    • Related Report
      2019 Research-status Report
  • [Presentation] チトクロム酸化酵素反応中間体の構造解析による、酸素還元と共役したプロトンポンプ機構の解明2019

    • Author(s)
      島田敦広、村本和優、伊藤・新澤恭子、月原冨武、吉川信也
    • Organizer
      第19回日本蛋白質科学会年会
    • Related Report
      2019 Research-status Report
  • [Presentation] 呼吸鎖電子伝達系末端酵素の構造と機能2019

    • Author(s)
      村本和優
    • Organizer
      2018年度べん毛研究交流会
    • Related Report
      2018 Research-status Report
  • [Presentation] Steady state kinetics of quinol oxidation by nitric oxide reductase from Neisseria meningitis.2018

    • Author(s)
      Jamali MMA, Muramoto K, Tosha T, Shiro Y.
    • Organizer
      9th Asian Biological Inorganic Chemistry Conference
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research
  • [Presentation] ウシ心筋ミトコンドリア由来シトクロムc酸化酵素のカルシウムイオン結合構造2018

    • Author(s)
      村本和優、伊藤・新澤恭子
    • Organizer
      本生体エネルギー研究会第43回討論会
    • Related Report
      2018 Research-status Report
  • [Presentation] Calcium ion-binding structure of respiratory A-type oxygen reductase.2018

    • Author(s)
      村本和優、伊藤・新澤恭子
    • Organizer
      日本生物物理学会第56回年会
    • Related Report
      2018 Research-status Report
  • [Remarks]

    • URL

      https://www.sci.u-hyogo.ac.jp/

    • Related Report
      2019 Research-status Report

URL: 

Published: 2018-04-23   Modified: 2022-01-27  

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