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Mechanisms of human LINE-1 retrotransposition

Research Project

Project/Area Number 18K06180
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Review Section Basic Section 43050:Genome biology-related
Research InstitutionKyoto University

Principal Investigator

Miyoshi Tomoichiro  京都大学, 生命科学研究科, 准教授 (60378841)

Project Period (FY) 2018-04-01 – 2021-03-31
Project Status Completed (Fiscal Year 2020)
Budget Amount *help
¥4,290,000 (Direct Cost: ¥3,300,000、Indirect Cost: ¥990,000)
Fiscal Year 2020: ¥1,040,000 (Direct Cost: ¥800,000、Indirect Cost: ¥240,000)
Fiscal Year 2019: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2018: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Keywordsゲノム / DNA損傷 / レトロトランスポゾン / 転移因子 / LINE-1 / DNA修復 / トランスポゾン / ゲノム維持 / L1
Outline of Final Research Achievements

Human LINE-1 retrotransposons still continue to generate inter- or intra-genetic diversity by mobilizing their own sequences into other genomic loci termed retrotransposition. Although more than one hundred disease-causing mutations by LINE-1 retrotransposition have been reported., the mechanisms of LINE-1 retrotransposition require elucidation. In this study, we demonstrated that 1) multiple DNA repair factors interact with the LINE-1 encoded proteins, 2) LINE1 proteins are posttranslationally modified by these DNA repair factors identified, and 3) PARP2 acts as a sensor protein that detect the sites of LINE-1 retrotransposition and plays a role in LINE-1 retrotransposition. These data suggest that LINE-1 retrotransposition can be effectively suppressed by an inhibitor that modulate activities of these DNA repair factors.

Academic Significance and Societal Importance of the Research Achievements

LINE-1による転移は、生殖細胞、初期発生、神経前駆細胞や多くのがん細胞など、様々な場所・タイミングでおこる。疾患につながる変異につながることを除けば、LINE-1の生物学的な意味はまだ理解されていない。本研究では、宿主細胞とLINE-1との相互作用からその転移機構の一端を明らかにした。これによりLINE-1の人為的な操作を行えるだけでなく、LINE-1が宿主にどうのような影響をもたらたすのか、その本質に迫る研究へと発展することができるだろう。将来的には、我々のゲノムがどのように形成されてきたのかを検証し、また今後どのように変化していくのかを予測することにもつながると期待される。

Report

(4 results)
  • 2020 Annual Research Report   Final Research Report ( PDF )
  • 2019 Research-status Report
  • 2018 Research-status Report
  • Research Products

    (22 results)

All 2020 2019 2018 Other

All Journal Article (2 results) (of which Peer Reviewed: 1 results) Presentation (19 results) (of which Int'l Joint Research: 4 results,  Invited: 3 results) Remarks (1 results)

  • [Journal Article] A battleground between human retrotransposons and host factors2020

    • Author(s)
      三好 知一郎
    • Journal Title

      生化学

      Volume: 92 Issue: 5 Pages: 726-730

    • DOI

      10.14952/SEIKAGAKU.2020.920726

    • NAID

      40022394516

    • ISSN
      0037-1017
    • Year and Date
      2020-10-25
    • Related Report
      2020 Annual Research Report
  • [Journal Article] Poly(ADP-Ribose) Polymerase 2 Recruits Replication Protein A to Sites of LINE-1 Integration to Facilitate Retrotransposition2019

    • Author(s)
      Miyoshi T, Makino T, Moran JV.
    • Journal Title

      Molecular Cell

      Volume: 75 Issue: 6 Pages: 1286-1298

    • DOI

      10.1016/j.molcel.2019.07.018

    • Related Report
      2019 Research-status Report
    • Peer Reviewed
  • [Presentation] Mechanisms of human LINE-1 retrotransposition2020

    • Author(s)
      Tomoichiro Miyoshi
    • Organizer
      第43回 日本分子生物学会年会
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] Poly(ADP-Ribose) polymerase 2 (PARP2) recruits replication protein A to sites of LINE-1 integration to facilitate retrotransposon2020

    • Author(s)
      Tomoichiro Miyoshi, Takeshi Makino, John V. Moran
    • Organizer
      Transposable Elements, CSHL Meetings & Courses Program
    • Related Report
      2020 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] HELZ2 inhibits human LINE-1 retrotoransposition2020

    • Author(s)
      Ahmad Luqman Abdul Fatah, Yuzo Watanabe, Fuyuki Ishikawa, and Tomoichiro Miyoshi
    • Organizer
      2020 NTU-KU-UT Virtual-Physical students mini-symposium on Cancer Biology and Medicine
    • Related Report
      2020 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Interferon-stimulated genes regulates human LINE-1 retrotransposition2020

    • Author(s)
      Ahmad Luqman Abdul Fatah, Yuzo Watanabe, Fuyuki Ishikawa, and Tomoichiro Miyoshi
    • Organizer
      Transposable Elements, CSHL Meetings & Courses Program
    • Related Report
      2020 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Mitochondrial and nuclear single-stranded DNA-binding proteins facilitate human LINE-1 retrotransposition2020

    • Author(s)
      Kaito Sugino, Takeshi Makino, Yuzo Watanabe, Fuyuki Ishikawa, John V. Moran, and Tomoichiro Miyoshi
    • Organizer
      Transposable Elements, CSHL Meetings & Courses Program
    • Related Report
      2020 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Mitochondrial protein, SSBP1, facilitates human L1 retrotransposition2020

    • Author(s)
      Kaito Sugino, Yuzo Watanabe, Takeshi Makino, Ahmad Luqman Abdul Fatah, Fuyuki Ishikawa, an Tomoichiro Miyoshi
    • Organizer
      第43回 日本分子生物学会
    • Related Report
      2020 Annual Research Report
  • [Presentation] Mitochondrial protein SSBP1 regulates human LINE-1 retrotransposition2020

    • Author(s)
      Kaito Sugino, Takeshi Makino, Yuzo Watanabe, Fuyuki Ishikawa, Tomoichiro Miyoshi
    • Organizer
      The 4th International Symposium of Kyoto Biomolecular Mass Spectrometry Society
    • Related Report
      2019 Research-status Report
  • [Presentation] Interferon-stimulated genes regulate human LINE-1 Retrotransposition2020

    • Author(s)
      Ahmad Luqman Abdul Fatah, Yuzo Watanabe, Fuyuki Ishikawa, Tomoichiro Miyoshi
    • Organizer
      The 4th International Symposium of Kyoto Biomolecular Mass Spectrometry Society
    • Related Report
      2019 Research-status Report
  • [Presentation] Identification and characterization of host factors that regulate human LINE-1 retrotransposition2019

    • Author(s)
      Tomoichiro Miyoshi, Kaito Sugino, Takeshi Makino, Fuyuki Ishikawa
    • Organizer
      第42回 日本分子生物学会
    • Related Report
      2019 Research-status Report
  • [Presentation] ヒト転移因子LINE-1の転移機構の解析2019

    • Author(s)
      三好 知一郎
    • Organizer
      染色体研究の最前線
    • Related Report
      2019 Research-status Report
  • [Presentation] HUWE1, an E3 ubiquitin ligase, facilitates human LINE-1 retrotransposition2019

    • Author(s)
      Takeshi Makino, Fuyuki Ishikawa, Tomoichiro Miyoshi
    • Organizer
      第42回 日本分子生物学会
    • Related Report
      2019 Research-status Report
  • [Presentation] Antiviral Protein Interferon-Induced Tetratricopeptide Repeats 1-3 Increase Long Interspersed Element-1 (LINE-1) Retrotransposition2019

    • Author(s)
      Ahmad Luqman Abdul Fatah, Fuyuki Ishikawa, Tomoichiro Miyoshi
    • Organizer
      第78回 日本癌学会学術総会
    • Related Report
      2019 Research-status Report
  • [Presentation] Identification and characterization of host factors that regulate human LINE-1 retrotransposition2019

    • Author(s)
      Tomoichiro Miyoshi, Takeshi Makino, Fuyuki Ishikawa, John V. Moran
    • Organizer
      The Mobile DNA Conference: 25 Years of Discussion and Research, FASEB Science Research Conference
    • Related Report
      2019 Research-status Report
  • [Presentation] HUWE1, an E3 ubiquitin ligase, promotes LINE-1 retrotransposition in the human genome2019

    • Author(s)
      Takeshi Makino, Fuyuki Ishikawa, Tomoichiro Miyoshi
    • Organizer
      The 17th International Student Seminar
    • Related Report
      2019 Research-status Report
  • [Presentation] 宿主DNA修復因子を介したヒトL1レトロトランスポゾンの転移機構2018

    • Author(s)
      三好 知一郎、John V. Moran
    • Organizer
      第90回 日本遺伝学会
    • Related Report
      2018 Research-status Report
    • Invited
  • [Presentation] Control of meiotic recombination initiation via high-order chromosomal architecture2018

    • Author(s)
      Ryo Kariyazono, Masaru Ito, Tomoichiro Miyoshi, Shintaro Yamada, Takatomi Yamada, and Kunihiro Ohta
    • Organizer
      第90回 日本遺伝学会 奈良
    • Related Report
      2018 Research-status Report
  • [Presentation] Human Testis Expressed 19 (TEX19) maintains genome integrity through destabilizing L1 retrotransposon2018

    • Author(s)
      Tomoichiro Miyoshi, Takeshi Makino, Ian R. Adams, Jose Luis Garcia-Perez, John V. Moran, Fuyuki Ishikawa
    • Organizer
      第41回 日本分子生物学会
    • Related Report
      2018 Research-status Report
  • [Presentation] Long Interspersed Element 1 (LINE-1) ORF1 protein RNA binding ability is essential for accumulation in stress granules2018

    • Author(s)
      Ahmad Luqman Abdul Fatah, Fuyuki Ishikawa, Tomoichiro Miyoshi
    • Organizer
      第41回 日本分子生物学会
    • Related Report
      2018 Research-status Report
  • [Presentation] HUWE1, an E3 ubiquitin ligase, promotes LINE-1 retrotransposition in human genome2018

    • Author(s)
      Takeshi Makino, Fuyuki Ishikawa, Tomoichiro Miyoshi
    • Organizer
      The 17th International Joint Mini-Symposium on Molecular and Cell Biology
    • Related Report
      2018 Research-status Report
  • [Remarks] 「がらくたDNA」がDNA上を移動する仕組みを解明 -宿主因子を巧妙に利用した移動戦略-

    • URL

      http://www.kyoto-u.ac.jp/ja/research/research_results/2019/190829_1.html

    • Related Report
      2019 Research-status Report

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Published: 2018-04-23   Modified: 2022-01-27  

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