• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to previous page

Transcriptional suppression of ribosomal DNA with phase separation

Research Project

Project/Area Number 18K06187
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Review Section Basic Section 43050:Genome biology-related
Research InstitutionNational Institute of Genetics

Principal Investigator

Ide Satoru  国立遺伝学研究所, 遺伝メカニズム研究系, 助教 (50534567)

Project Period (FY) 2018-04-01 – 2021-03-31
Project Status Completed (Fiscal Year 2020)
Budget Amount *help
¥4,420,000 (Direct Cost: ¥3,400,000、Indirect Cost: ¥1,020,000)
Fiscal Year 2020: ¥520,000 (Direct Cost: ¥400,000、Indirect Cost: ¥120,000)
Fiscal Year 2019: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Fiscal Year 2018: ¥2,080,000 (Direct Cost: ¥1,600,000、Indirect Cost: ¥480,000)
KeywordsリボソームRNA遺伝子 / RNAポリメラーゼI / 希少疾患 / 液ー液相分離 / 核小体 / 遺伝疾患 / クロマチン / 神経疾患
Outline of Final Research Achievements

The nucleolus is a nuclear body with multiphase liquid droplets for ribosomal RNA (rRNA) transcription. How rRNA transcription is regulated in the droplets remains unclear. Here, using single-molecule tracking of RNA polymerase I (Pol I) and upstream binding factor (UBF), we reveal suppression of transcription with phase separation. For transcription, active Pol I formed small clusters/condensates that constrained rDNA chromatin in the nucleolus fibrillar center (FC). Treatment with a transcription inhibitor induced Pol I to dissociate from rDNA chromatin and to move like a liquid within the nucleolar cap that transformed from the FC. Expression of a Pol I mutant associated with a craniofacial disorder inhibited transcription by competing with wild-type Pol I clusters and transforming the FC into the nucleolar cap. The cap droplet excluded an initiation factor, ensuring robust silencing. Our findings suggest a mechanism of rRNA transcription suppression via phase separation.

Academic Significance and Societal Importance of the Research Achievements

臨床的な所見を有しながら通常の医療の中で診断に至ることが困難な病気が多くあり、原因もわからず、治療方法も見つからないままになっている。本研究では、次世代シークエンサーを使った遺伝性疾患ゲノム解析により同定された、タンパク質翻訳装置であるリボソーム合成に関わる因子の変異を解析した。その結果、油と水が分離する原理、いわゆる液―液相分離がリボソームの異常に起因するヒト遺伝性疾患の原因となることを明らかにした。今後このような細胞の異常や関連疾患の理解が進むことが期待される。

Report

(4 results)
  • 2020 Annual Research Report   Final Research Report ( PDF )
  • 2019 Research-status Report
  • 2018 Research-status Report
  • Research Products

    (12 results)

All 2021 2020 2019 2018 Other

All Journal Article (4 results) (of which Peer Reviewed: 4 results,  Open Access: 4 results) Presentation (4 results) (of which Int'l Joint Research: 1 results) Book (2 results) Remarks (2 results)

  • [Journal Article] 1,6-hexanediol rapidly immobilizes and condenses chromatin in living human cells2021

    • Author(s)
      Itoh Yuji、Iida Shiori、Tamura Sachiko、Nagashima Ryosuke、Shiraki Kentaro、Goto Tatsuhiko、Hibino Kayo、Ide Satoru、Maeshima Kazuhiro
    • Journal Title

      Life Science Alliance

      Volume: 4 Issue: 4 Pages: e202001005-e202001005

    • DOI

      10.26508/lsa.202001005

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Transcriptional suppression of ribosomal DNA with phase separation.2020

    • Author(s)
      Ide, T., Ochi, H., Imai, R., Maeshima, K.
    • Journal Title

      Science Advances.

      Volume: 6 Issue: 42

    • DOI

      10.1126/sciadv.abb5953

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Dynamic chromatin organization without the 30-nm fiber2019

    • Author(s)
      Maeshima Kazuhiro、Ide Satoru、Babokhov Michael
    • Journal Title

      Current Opinion in Cell Biology

      Volume: 58 Pages: 95-104

    • DOI

      10.1016/j.ceb.2019.02.003

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] SETDB1 dependent heterochromatin stimulates alternative lengthening of telomeres2019

    • Author(s)
      Mathilde Gauchier、Sophie Kan、Amandine Barral、Sandrine Sauzet、 Eneritz Agirre、Erin Bonnell、Nehme. Saksouk、Teresa K. Barth、Satoru Ide、Serge Urbach、Raymund J. Wellinger、Reini F. Luco、Axel Imhof、Jerome Dejardin
    • Journal Title

      Science Advances

      Volume: 5 Issue: 5

    • DOI

      10.1126/sciadv.aav3673

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Open Access
  • [Presentation] 相分離に伴うリボソームRNA遺伝子の転写抑制2021

    • Author(s)
      井手聖、今井亮輔、大地弘子、前島一博
    • Organizer
      第38 回 染色体ワークショップ/第19 回 核ダイナミクス研究会
    • Related Report
      2020 Annual Research Report
  • [Presentation] 相分離に伴うリボソームRNA遺伝子の転写抑制2020

    • Author(s)
      井手聖、今井亮輔、大地弘子、前島一博
    • Organizer
      第43回日本分子生物学会年会
    • Related Report
      2020 Annual Research Report
  • [Presentation] Shut-down of ribosomal RNA transcription by liquid-like behavior of inactive RNA polymerase I2019

    • Author(s)
      Satoru Ide
    • Organizer
      第42回分子生物学会年会
    • Related Report
      2019 Research-status Report
  • [Presentation] Liquid droplets induced by aberrant RNA polymerase I in a craniofacial disorder lead to ribosome dysfunction2019

    • Author(s)
      Satoru Ide
    • Organizer
      3R&3C Symposium
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research
  • [Book] 現代化学増刊46『相分離生物学の全貌』白木 賢太郎 (編集)2020

    • Author(s)
      井手聖, 前島一博
    • Total Pages
      6
    • Publisher
      東京化学同人
    • Related Report
      2020 Annual Research Report
  • [Book] 教科書を書き換えろ!染色体の新常識2018

    • Author(s)
      井手 聖、平野 達也、胡桃坂 仁志
    • Total Pages
      214
    • Publisher
      羊土社
    • ISBN
      9784758103749
    • Related Report
      2018 Research-status Report
  • [Remarks] 転写は「液滴」によって制御されていた!

    • URL

      https://www.nig.ac.jp/nig/ja/2020/10/research-highlights_ja/pr20201015.html

    • Related Report
      2020 Annual Research Report
  • [Remarks] 細胞内のダイナミックなクロマチン構造

    • URL

      https://www.nig.ac.jp/nig/ja/2019/03/research-highlights_ja/rh20190315.html

    • Related Report
      2018 Research-status Report

URL: 

Published: 2018-04-23   Modified: 2022-01-27  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi