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Speciation as a by product of environmental adaptation

Research Project

Project/Area Number 18K06361
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Review Section Basic Section 45020:Evolutionary biology-related
Research InstitutionThe Graduate University for Advanced Studies

Principal Investigator

Terai Yohey  総合研究大学院大学, 先導科学研究科, 助教 (30432016)

Co-Investigator(Kenkyū-buntansha) 宅野 将平  総合研究大学院大学, 先導科学研究科, 助教 (20547294)
藤村 衡至  新潟大学, 自然科学系, 助教 (90722140)
Project Period (FY) 2018-04-01 – 2021-03-31
Project Status Completed (Fiscal Year 2020)
Budget Amount *help
¥4,290,000 (Direct Cost: ¥3,300,000、Indirect Cost: ¥990,000)
Fiscal Year 2020: ¥910,000 (Direct Cost: ¥700,000、Indirect Cost: ¥210,000)
Fiscal Year 2019: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2018: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Keywords適応 / 種分化 / 視覚関連遺伝子 / 解毒関連遺伝子 / シクリッド / スラウェシマカク / マカク
Outline of Final Research Achievements

In this study, we used whole-genome analysis to isolate genes involved in species adaptation and speciation from genomic regions differentiated between species and to elucidate reproductive isolation as a byproduct of adaptation. In the Lake Victoria cichlids, we found that only the genomic regions related to the differences between the two species were differentiated in the early stages of speciation, and that adaptation and speciation occurred through the combined functions of the genes that existed in these regions. In Sulawesi macaques, genes involved in feeding habits are adaptively differentiated, while genes not essential for survival are pseudogenized. In the sea snake, we found that vision is adapted to the habitat in which it forages.

Academic Significance and Societal Importance of the Research Achievements

これまでの研究で、種分化は特定の遺伝子の機能分化により起こる例が報告されていた。本研究では、多くの遺伝子が複合的に関わり適応と生殖的隔離が密接に関係して種分化が起きることを示した。これは学術的に重要な第一歩であり、今後の全ゲノムを用いた種分化研究に大きな影響を与えると考えている。また、ダーウィン著の種の起源以来、種分化は生物学での大きな謎であった。それを一般にわかりやすく説明できる点で、本研究の社会的意義は大きいと考えている。

Report

(4 results)
  • 2020 Annual Research Report   Final Research Report ( PDF )
  • 2019 Research-status Report
  • 2018 Research-status Report
  • Research Products

    (45 results)

All 2020 2019 2018 Other

All Int'l Joint Research (2 results) Journal Article (13 results) (of which Int'l Joint Research: 5 results,  Peer Reviewed: 12 results,  Open Access: 12 results) Presentation (25 results) (of which Int'l Joint Research: 12 results,  Invited: 8 results) Book (4 results) Remarks (1 results)

  • [Int'l Joint Research] ボゴール農科大学(インドネシア)

    • Related Report
      2019 Research-status Report
  • [Int'l Joint Research] ボゴール農科大学(インドネシア)

    • Related Report
      2018 Research-status Report
  • [Journal Article] Visual adaptation of opsin genes to the aquatic environment in sea snakes2020

    • Author(s)
      Seiko Takashi、Kishida Takushi、Toyama Mina、Hariyama Takahiko、Okitsu Takashi、Wada Akimori、Toda Mamoru、Satta Yoko、Terai Yohey
    • Journal Title

      BMC Evolutionary Biology

      Volume: 20 Issue: 1 Pages: 1-13

    • DOI

      10.1186/s12862-020-01725-1

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Analysis of the Mitochondrial Genomes of Japanese Wolf Specimens in the Siebold Collection, Leiden2020

    • Author(s)
      Matsumura Shuichi、Terai Yohey、Hongo Hitomi、Ishiguro Naotaka
    • Journal Title

      Zoological Science

      Volume: 38 Issue: 1 Pages: 60-66

    • DOI

      10.2108/zs200019

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] In vitro resynthesis of lichenization reveals the genetic background of symbiosis-specific fungal-algal interaction in Usnea hakonensis2020

    • Author(s)
      Kono Mieko、Kon Yoshiaki、Ohmura Yoshihito、Satta Yoko、Terai Yohey
    • Journal Title

      BMC Genomics

      Volume: 21 Issue: 1 Pages: 1-16

    • DOI

      10.1186/s12864-020-07086-9

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Presence?absence polymorphisms of single-copy genes in the stony coral Acropora digitifera2020

    • Author(s)
      Takahashi-Kariyazono Shiho、Sakai Kazuhiko、Terai Yohey
    • Journal Title

      BMC Genomics

      Volume: 21 Issue: 1 Pages: 1-13

    • DOI

      10.1186/s12864-020-6566-4

    • Related Report
      2020 Annual Research Report 2019 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] 動植物ゲノム紹介: ニホンオオカミと日本犬2020

    • Author(s)
      寺井洋平
    • Journal Title

      Yaponesia 第1巻ふゆ号

      Volume: 1 Pages: 10-10

    • Related Report
      2019 Research-status Report
  • [Journal Article] Fluorescence emission in a marine snake2019

    • Author(s)
      SEIKO Takashi、TERAI Yohey
    • Journal Title

      Galaxea, Journal of Coral Reef Studies

      Volume: 21 Issue: 1 Pages: 7-8

    • DOI

      10.3755/galaxea.21.1_7

    • NAID

      130007709328

    • ISSN
      1883-0838, 1883-3969
    • Related Report
      2019 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Functional divergence of the bitter receptor TAS2R38 in Sulawesi macaques2019

    • Author(s)
      Widayati Kanthi Arum、Yan Xiaochan、Suzuki‐Hashido Nami、Itoigawa Akihiro、Purba Laurentia Henrieta Permita Sari、Fahri Fahri、Terai Yohey、Suryobroto Bambang、Imai Hiroo
    • Journal Title

      Ecology and Evolution

      Volume: 9 Issue: 18 Pages: 10387-10403

    • DOI

      10.1002/ece3.5557

    • NAID

      120006844943

    • Related Report
      2019 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Patterns of genomic differentiation between two Lake Victoria cichlid species, Haplochromis pyrrhocephalus and H. sp. ‘macula’.2019

    • Author(s)
      Takuno S, Miyagi R, Onami J, Takahashi-Kariyazono S, Sato A, Tichy H, Nikaido M, Aibara M, Mizoiri S, Mrosso DJH, Mzighani S, Okada N, Terai Y.
    • Journal Title

      BMC Evolutionary Biology

      Volume: 19 Issue: 1 Pages: 68-68

    • DOI

      10.1186/s12862-019-1387-2

    • Related Report
      2019 Research-status Report 2018 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Convergent evolution of body color between sympatric freshwater fishes via different visual sensory evolution2019

    • Author(s)
      Montenegro Javier、Mochida Koji、Matsui Kumi、Mokodongan Daniel F.、Sumarto Bayu K. A.、Lawelle Sjamsu A.、Nofrianto Andy B.、Hadiaty Renny K.、Masengi Kawilarang W. A.、Yong Lengxob、Inomata Nobuyuki、Irie Takahiro、Hashiguchi Yasuyuki、Terai Yohey、Kitano Jun、Yamahira Kazunori
    • Journal Title

      Ecology and Evolution

      Volume: 1 Issue: 11 Pages: 1-10

    • DOI

      10.1002/ece3.5211

    • Related Report
      2019 Research-status Report 2018 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Expression Changes of Structural Protein Genes May Be Related to Adaptive Skin Characteristics Specific to Humans2019

    • Author(s)
      Arakawa Nami、Utsumi Daisuke、Takahashi Kenzo、Matsumoto-Oda Akiko、Nyachieo Atunga、Chai Daniel、Jillani Ngalla、Imai Hiroo、Satta Yoko、Terai Yohey
    • Journal Title

      Genome Biology and Evolution

      Volume: 11 Issue: 3 Pages: 613-628

    • DOI

      10.1093/gbe/evz007

    • Related Report
      2019 Research-status Report 2018 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Circatidal gene expression in the mangrove cricket Apteronemobius asahinai2019

    • Author(s)
      Satoh Aya、Terai Yohey
    • Journal Title

      Scientific Reports

      Volume: 9 Issue: 1 Pages: 1-7

    • DOI

      10.1038/s41598-019-40197-2

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Presence?Absence Polymorphisms of Highly Expressed FP Sequences Contribute to Fluorescent Polymorphisms in Acropora digitifera2018

    • Author(s)
      Takahashi-Kariyazono Shiho、Sakai Kazuhiko、Terai Yohey
    • Journal Title

      Genome Biology and Evolution

      Volume: 10 Issue: 7 Pages: 1715-1729

    • DOI

      10.1093/gbe/evy122

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Physiological responses of ionotropic histamine receptors, PxHCLA and PxHCLB, to neurotransmitter candidates in a butterfly, Papilio xuthus2018

    • Author(s)
      Akashi Hiroshi D.、Chen Pei-Ju、Akiyama Tokiho、Terai Yohey、Wakakuwa Motohiro、Takayama Yasunori、Tominaga Makoto、Arikawa Kentaro
    • Journal Title

      The Journal of Experimental Biology

      Volume: 221 Pages: 2234-2242

    • DOI

      10.1242/jeb.183129

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Presentation] Visual adaptation leads to the breeding color diversity in cichlid fish2020

    • Author(s)
      3.Yohey Terai
    • Organizer
      The 24th International Pigment Cell Conference
    • Related Report
      2020 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Speciation and secondary contact in Sulawesi macaque species2019

    • Author(s)
      Terai Y, Takuno S, Widayati KA, Purba LHPS, Yan X, Imai H, Suryobroto B
    • Organizer
      SMBE meeting
    • Related Report
      2019 Research-status Report
    • Int'l Joint Research
  • [Presentation] Expression Changes of Structural Protein Genes That May Be Related to Adaptive Human Skin Characteristics2019

    • Author(s)
      Arakawa N, Utsumi D, Takahashi K, Matsumoto-Oda A, Nyachieo A, Chai D, Jillani N, Imai H, Satta Y, Terai Y
    • Organizer
      SMBE meeting
    • Related Report
      2019 Research-status Report
  • [Presentation] 皮膚でのヒト特異的遺伝子発現を生み出す塩基置換の特定2019

    • Author(s)
      荒川那海,今井啓雄,颯田葉子,寺井洋平
    • Organizer
      日本進化学会第21回大会
    • Related Report
      2019 Research-status Report
  • [Presentation] 地衣類・イオウゴケの共生を介した環境適応2019

    • Author(s)
      河野美恵子 寺井洋平
    • Organizer
      日本進化学会第21回大会
    • Related Report
      2019 Research-status Report
  • [Presentation] Visual Adaptation of Full and Semi Aquatic Sea Snakes2019

    • Author(s)
      Seiko T, Kishida T, Toda M, Satta Y, Terai Y
    • Organizer
      World Congress of Herpetology (WCH9)
    • Related Report
      2019 Research-status Report
    • Int'l Joint Research
  • [Presentation] ウミヘビの視覚の海棲環境への適応2019

    • Author(s)
      清古貴, 岸田拓士, 戸田守, 颯田葉子, 寺井洋平
    • Organizer
      日本爬虫両棲類学会第58回大会
    • Related Report
      2019 Research-status Report
  • [Presentation] 日本犬の成立に寄与したニホンオオカミのゲノム領域の解明2019

    • Author(s)
      寺井洋平
    • Organizer
      日本進化学会第21回大会
    • Related Report
      2019 Research-status Report
    • Invited
  • [Presentation] シクリッドの複合的な適応と体色の進化による種分化2019

    • Author(s)
      寺井洋平
    • Organizer
      日本動物学会 第90回大会
    • Related Report
      2019 Research-status Report
    • Invited
  • [Presentation] 魚の視覚・色覚・視細胞の適応進化2019

    • Author(s)
      寺井洋平
    • Organizer
      SOKENDAI-iTHEMS Joint Workshop "Genetics meets Mathematics"
    • Related Report
      2019 Research-status Report
    • Invited
  • [Presentation] ゲノム解析が明かす種分化の謎、スラウェシ島のマカクの種分化と二次的接触2018

    • Author(s)
      寺井洋平
    • Organizer
      第34回日本霊長類学会
    • Related Report
      2018 Research-status Report
    • Invited
  • [Presentation] 遺伝子発現から探るヒト特異的皮膚形質2018

    • Author(s)
      寺井洋平
    • Organizer
      第72回 日本人類学会大会
    • Related Report
      2018 Research-status Report
    • Invited
  • [Presentation] ニホンオオカミの古代ゲノム2018

    • Author(s)
      石黒直隆、寺井洋平
    • Organizer
      第72回 日本人類学会大会
    • Related Report
      2018 Research-status Report
    • Invited
  • [Presentation] Gene annotation for small genome size organism2018

    • Author(s)
      Yohey Terai
    • Organizer
      The 16th Korea-Japan-China Bioinformatics Symposium
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] Speciation and secondary contact between two Sulawesi macaque species, Macaca tonkeana and M. hecki.2018

    • Author(s)
      Yohey Terai, Sohei Takuno, Hiroo Imai, Laurentia Henrieta Purba, Kanthi Arum Widayati, Bambang Suryobroto.
    • Organizer
      SMBE meeting 2018
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research
  • [Presentation] Identification of fungal and algal genes involved in the symbiosis of lichen Usnea hakonensis2018

    • Author(s)
      Kono M, Kon Y, Ohmura Y, Satta Y, Terai Y
    • Organizer
      SMBE meeting 2018
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research
  • [Presentation] Acquisition of Human-specific Characteristics of Skin through Gene Expression Changes2018

    • Author(s)
      Arakawa N、Terai Y、Imai H、Satta Y
    • Organizer
      SMBE meeting 2018
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research
  • [Presentation] Presence-absence polymorphisms of highly expressed FP sequences contribute to fluorescent polymorphisms in the stony coral, Acropora digitifera2018

    • Author(s)
      Takahashi-Kariyazono S、Terai Y
    • Organizer
      SMBE meeting 2018
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research
  • [Presentation] Visual adaptation of sea snake2018

    • Author(s)
      Seiko T、Kishida T、Toda M、Toyama M、Hariyama T、Okitsu T、Wada A、Satta Y、Terai Y
    • Organizer
      SMBE meeting 2018
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research
  • [Presentation] ウミヘビの視覚の海棲適応2018

    • Author(s)
      清古貴、岸田拓士、戸田守、颯田葉子、寺井洋平
    • Organizer
      第20回 日本進化学会
    • Related Report
      2018 Research-status Report
  • [Presentation] 皮膚でのヒト特異的遺伝子発現を生み出す塩基置換の推定について2018

    • Author(s)
      荒川那海、寺井洋平、今井啓雄、颯田葉子
    • Organizer
      第20回 日本進化学会
    • Related Report
      2018 Research-status Report
  • [Presentation] サンゴの蛍光多型の遺伝子基盤とその進化2018

    • Author(s)
      仮屋園(高橋)志帆、寺井洋平
    • Organizer
      第20回 日本進化学会
    • Related Report
      2018 Research-status Report
  • [Presentation] Speciation through complex adaptation processes in Lake Victoria cichlid species2018

    • Author(s)
      Terai Y、Takuno S
    • Organizer
      THE 46th NAITO CONFERENCE ON Mechanisms of Evolution and Biodiversity
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research
  • [Presentation] Acquisition of adaptive characteristics in human skin through gene expression changes2018

    • Author(s)
      Arakawa N、Terai Y、Imai H、Satta Y
    • Organizer
      THE 46th NAITO CONFERENCE ON Mechanisms of Evolution and Biodiversity
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research
  • [Presentation] Phylogenetic Inference from Whole Exonic Sequence of Seven Sulawesi Macaques Species2018

    • Author(s)
      Terai Y、Takuno S、Widayati KA、Purba L、Yan X、Imai H、Suryobroto B
    • Organizer
      6th Asian Primates Symposium&5th Asia n (Indochinese) Primates Conservation Symposium
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research
  • [Book] 生物多様性の謎に迫る2018

    • Author(s)
      寺井 洋平
    • Total Pages
      200
    • Publisher
      化学同人
    • ISBN
      4759816771
    • Related Report
      2018 Research-status Report
  • [Book] 魚類学の百科事典: 種分化の遺伝学2018

    • Author(s)
      寺井洋平 (共著)
    • Total Pages
      756
    • Publisher
      丸善出版
    • ISBN
      4621303171
    • Related Report
      2018 Research-status Report
  • [Book] 魚類学の百科事典: 色彩と視覚2018

    • Author(s)
      寺井洋平 (共著)
    • Total Pages
      756
    • Publisher
      丸善出版
    • ISBN
      4621303171
    • Related Report
      2018 Research-status Report
  • [Book] 動物学の百科事典: 適応放散2018

    • Author(s)
      寺井洋平 (共著)
    • Total Pages
      800
    • Publisher
      丸善出版
    • ISBN
      4621303090
    • Related Report
      2018 Research-status Report
  • [Remarks] 種分化と適応の機構の研究の紹介

    • URL

      http://adaptive-speciation.com/

    • Related Report
      2020 Annual Research Report 2019 Research-status Report 2018 Research-status Report

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Published: 2018-04-23   Modified: 2022-01-27  

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