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Evolutionary genomics of hot spring frogs, Buergeria japonica

Research Project

Project/Area Number 18K06365
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Review Section Basic Section 45020:Evolutionary biology-related
Research InstitutionHiroshima University

Principal Investigator

Igawa Takeshi  広島大学, 両生類研究センター, 助教 (00507197)

Co-Investigator(Kenkyū-buntansha) 荻野 肇  広島大学, 両生類研究センター, 教授 (10273856)
Project Period (FY) 2018-04-01 – 2021-03-31
Project Status Completed (Fiscal Year 2020)
Budget Amount *help
¥4,420,000 (Direct Cost: ¥3,400,000、Indirect Cost: ¥1,020,000)
Fiscal Year 2020: ¥520,000 (Direct Cost: ¥400,000、Indirect Cost: ¥120,000)
Fiscal Year 2019: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Fiscal Year 2018: ¥2,080,000 (Direct Cost: ¥1,600,000、Indirect Cost: ¥480,000)
Keywords適応進化 / ゲノム解読 / 極限環境 / 生物多様性 / 遺伝子発現調節 / 両生類 / 分布拡大 / ゲノム進化 / 温度適応 / 分子進化 / 環境適応 / 温度耐性 / 遺伝子発現 / ゲノム / 高温耐性 / ゲノム編集
Outline of Final Research Achievements

The purpose of study is to elucidate genes responsible for high temperature resistance of Ryukyu Kajika frog, Buergeria japonica that has acquired high temperature resistance enough to grow in hot springs, which will contribute to understand genetic basis of adaptive evolution. The result of gene expression analysis clarified that some important genes involved in gene expression regulation are highly expressed in the tadpoles grown continuously at high temperature. The result of comparative genomic analysis with the closely related species Kajika frog clarified that the sequences of temperature-sensitive receptors and heat shock response proteins were significantly different in nucleotide and amino acid sequences, and that was considered that the gene function under high temperature tolerance should be changed.

Academic Significance and Societal Importance of the Research Achievements

進化学において、適応進化はよく知られた現象であるが、そのプロセスや遺伝子機能に迫る研究はこれまであまり行われていなかった。本研究では極限環境に生息する生物の遺伝情報を網羅的に決定し、遺伝子機能の変化を明らかにした。本研究の成果は、生物多様性をもたらす適応進化のメカニズムの根本的理解につながると考えられる。

Report

(4 results)
  • 2020 Annual Research Report   Final Research Report ( PDF )
  • 2019 Research-status Report
  • 2018 Research-status Report
  • Research Products

    (36 results)

All 2020 2019 2018 Other

All Journal Article (14 results) (of which Int'l Joint Research: 3 results,  Peer Reviewed: 13 results,  Open Access: 10 results) Presentation (21 results) (of which Int'l Joint Research: 1 results,  Invited: 7 results) Remarks (1 results)

  • [Journal Article] Complete mitochondrial genome of Hynobius dunni (Amphibia, Caudata, Hynobiidae) and its phylogenetic position2020

    • Author(s)
      Takeshi Igawa , Hisanori Okamiya , Hajime Ogino & Masahiro Nagano
    • Journal Title

      Mitochondrial DNA Part B Resources

      Volume: 5 Issue: 3 Pages: 2241-2242

    • DOI

      10.1080/23802359.2020.1770140

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Heterogeneity of synonymous substitution rates in the Xenopus frog genome.2020

    • Author(s)
      *Lau, Q., Igawa, T., Ogino, H., Katsura, Y., Ikemura, T. and Satta, Y.
    • Journal Title

      PLoS One

      Volume: 15 Issue: 8 Pages: 2241-2242

    • DOI

      10.1371/journal.pone.0236515

    • NAID

      120007159972

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Spontaneous neoplasia in the western clawed frog Xenopus tropicalis2020

    • Author(s)
      Suzuki Makoto、Igawa Takeshi、Suzuki Nanoka、Ogino Hajime、Ochi Haruki
    • Journal Title

      microPublication Biology

      Volume: -

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Hot spring frogs (Buergeria japonica) prefer cooler water to hot water2020

    • Author(s)
      Komaki Shohei、Sutoh Yoichi、Kobayashi Kensuke、Saito Shigeru、Saito Claire T.、Igawa Takeshi、Lau Quintin
    • Journal Title

      Ecology and Evolution

      Volume: 10 Issue: 17 Pages: 9466-9473

    • DOI

      10.1002/ece3.6637

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Geographic Origin and Genetic Characteristics of Japanese Indigenous Chickens Inferred from Mitochondrial D-Loop Region and Microsatellite DNA Markers2020

    • Author(s)
      Hata Ayano、Takenouchi Atsushi、Kinoshita Keiji、Hirokawa Momomi、Igawa Takeshi、Nunome Mitsuo、Suzuki Takayuki、Tsudzuki Masaoki
    • Journal Title

      Animals

      Volume: 10 Issue: 11 Pages: 2074-2074

    • DOI

      10.3390/ani10112074

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Expression Changes of MHC and Other Immune Genes in Frog Skin during Ontogeny2020

    • Author(s)
      Lau Quintin、Igawa Takeshi、Komaki Shohei、Satta Yoko
    • Journal Title

      Animals

      Volume: 10 Issue: 1 Pages: 91-91

    • DOI

      10.3390/ani10010091

    • Related Report
      2019 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Comparison of the detection of 3 endangered frog species by eDNA and acoustic surveys across 3 seasons2020

    • Author(s)
      Takahara Teruhiko、Iwai Noriko、Yasumiba Kiyomi、Igawa Takeshi
    • Journal Title

      Freshwater Science

      Volume: 39 Issue: 1 Pages: 18-27

    • DOI

      10.1086/707365

    • Related Report
      2019 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Mapping of Quantitative Trait Loci for Growth and Carcass-Related Traits in Chickens Using a Restriction-Site Associated DNA Sequencing Method2019

    • Author(s)
      Ono Takashi、Ohara Ken、Ishikawa Akira、Kouguchi Tomomi、Nagano Atsushi J.、Takenouchi Atsushi、Igawa Takeshi、Tsudzuki Masaoki
    • Journal Title

      The Journal of Poultry Science

      Volume: 56 Issue: 3 Pages: 166-176

    • DOI

      10.2141/jpsa.0180066

    • NAID

      130007683049

    • ISSN
      1346-7395, 1349-0486
    • Related Report
      2019 Research-status Report 2018 Research-status Report
    • Peer Reviewed
  • [Journal Article] Xenopus Resources: Transgenic, Inbred and Mutant Animals, Training Opportunities, and Web-Based Support2019

    • Author(s)
      Horb Marko、Wlizla Marcin、Abu-Daya Anita、McNamara Sean、Gajdasik Dominika、Igawa Takeshi、Suzuki Atsushi、Ogino Hajime、Noble Anna、Centre de Ressource Biologique Xenope team in France
    • Journal Title

      Frontiers in Physiology

      Volume: 10 Pages: 1-10

    • DOI

      10.3389/fphys.2019.00387

    • Related Report
      2019 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] An application of PCR-RFLP species identification assay for environmental DNA detection2019

    • Author(s)
      Igawa Takeshi、Takahara Teruhiko、Lau Quintin、Komaki Shohei
    • Journal Title

      PeerJ

      Volume: 7 Pages: e7597-e7597

    • DOI

      10.7717/peerj.7597

    • Related Report
      2019 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Detecting inter- and intra-island genetic diversity: population structure of the endangered crocodile newt, Echinotriton andersoni, in the Ryukyus2019

    • Author(s)
      Igawa Takeshi、Sugawara Hirotaka、Honda Masanao、Tominaga Atsushi、Oumi Shohei、Katsuren Seiki、Ota Hidetoshi、Matsui Masafumi、Sumida Masayuki
    • Journal Title

      Conservation Genetics

      Volume: 21 Issue: 1 Pages: 13-26

    • DOI

      10.1007/s10592-019-01219-8

    • Related Report
      2019 Research-status Report
    • Peer Reviewed
  • [Journal Article] Selective constraint acting on TLR2 and TLR4 genes of Japanese Rana frogs2018

    • Author(s)
      Lau Quintin、Igawa Takeshi、Kosch Tiffany A.、Satta Yoko
    • Journal Title

      PeerJ

      Volume: 6 Pages: e4842-e4842

    • DOI

      10.7717/peerj.4842

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Quantitative trait loci mapping for the shear force value in breast muscle of F2 chickens2018

    • Author(s)
      Ono Takashi、Kouguchi Tomomi、Ishikawa Akira、Nagano Atsushi J、Takenouchi Atsushi、Igawa Takeshi、Tsudzuki Masaoki
    • Journal Title

      Poultry Science

      Volume: 98 Issue: 3 Pages: 1096-1101

    • DOI

      10.3382/ps/pey493

    • Related Report
      2018 Research-status Report
    • Peer Reviewed
  • [Journal Article] 私の実験動物、やっぱり個性派です! 温泉に生きるド根性ガエル―リュウキュウカジカガエル2018

    • Author(s)
      井川武、小巻翔平、荻野肇
    • Journal Title

      実験医学

      Volume: 36 Pages: 2806-2810

    • Related Report
      2018 Research-status Report
  • [Presentation] ネッタイツメガエルを用いた遺伝学・ゲノム科学的 リソース基盤の形成とその活用2020

    • Author(s)
      鈴木 誠, 井川 武, 鈴木菜花, 古野伸明, 田澤 一朗, 高瀬 稔, 荻野 肇
    • Organizer
      第43回日本分子生物学会年会
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] ネッタイツメガエルの遺伝学・ゲノム科学的リソース基盤の形成とその活用2020

    • Author(s)
      鈴木 誠, 井川 武, 柏木昭彦, 柏木啓子, 古野伸明, 鈴木菜花, 田澤一朗, 高瀬 稔, 三浦郁夫, 鈴木 厚, 花田秀樹, 中島圭介, 彦坂 暁, 越智陽城, 加藤尚志, 森 司, 荻野 肇
    • Organizer
      ナショナルバイオリソースプロジェクト(NBRP) オンラインフォーラム2020
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] ツメガエル胚におけるヒト胎盤型アルカリフォスファターゼをレポーターとして用いた三次元組織解析系の構築2020

    • Author(s)
      阪上起世, 井川 武, 齊川佳織, 鈴木菜花, 鈴木 誠, 荻野 肇
    • Organizer
      日本動物学会第91回大会
    • Related Report
      2020 Annual Research Report
  • [Presentation] Convergent evolution of duplicated genes in different evolutionary lineages2020

    • Author(s)
      Tanouchi, M., Igawa, T., Suzuki, M., Suzuki, N. and Ogino, H
    • Organizer
      第53回日本発生生物学会大会
    • Related Report
      2020 Annual Research Report
  • [Presentation] 異なる進化系譜における倍加遺伝子の収斂進化2019

    • Author(s)
      田内幹大,井川 武,鈴木 誠,鈴木菜花,荻野 肇
    • Organizer
      第42回日本分子生物学会年会
    • Related Report
      2019 Research-status Report
  • [Presentation] ネッタイツメガエル近交系4系統のゲノム解読と系統間の遺伝的変異2019

    • Author(s)
      井川 武、松波雅俊、今村美菜子、鈴木 誠、鈴木菜花、柏木昭彦、柏木啓子、越智陽城、前田士郎、*荻野 肇
    • Organizer
      第42回日本分子生物学会年会特別シンポジウム「NBRPが支える生命科学研究最前線
    • Related Report
      2019 Research-status Report
    • Invited
  • [Presentation] ネッタイツメガエルを用いた遺伝学・ゲノム科学的 リソース基盤の形成とその活用2019

    • Author(s)
      井川 武,鈴木 誠,柏木昭彦,柏木啓子,古野伸明,鈴木菜花,田澤 一朗,高瀬 稔,三浦 郁夫,鈴木 厚,花田秀樹,中島圭介,彦坂 暁,越智陽城,加藤尚志,森 司,*荻野 肇
    • Organizer
      第42回日本分子生物学会年会
    • Related Report
      2019 Research-status Report
  • [Presentation] Generation of Xenopus tropicalis inbred strains and their genome polymorphism data by NBRP in Japan2019

    • Author(s)
      Igawa, T., Suzuki, M., Suzuki, N., Kashiwagi, A., Kashiwagi, K., Ochi, H. and Ogino, H.
    • Organizer
      Xenopus Resources and Emerging Technology Meeting
    • Related Report
      2019 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] ネッタイツメガエルを用いた発生遺伝学およびゲノム進化学研究2019

    • Author(s)
      荻野 肇、井川 武、柏木昭彦、柏木啓子、田内幹大、岩田 唯、越智陽城、鈴木菜花、田澤一朗、鈴木 誠
    • Organizer
      日本動物学会第90回大会シンポジウム「第38回胚誘導と形態形成・第28回イモリ・ネットワーク共催 新しい両生類研究への誘い」
    • Related Report
      2019 Research-status Report
  • [Presentation] 「ツメガエル」ってどんなカエル?2019

    • Author(s)
      鈴木菜花,鈴木 誠,井川 武,柏木啓子,柏木昭彦,荻野 肇
    • Organizer
      日本動物学会第90回大会「動物学ひろば」、大阪市立大学、大阪市、2019.9.13,社会アウトリーチ展示
    • Related Report
      2019 Research-status Report
  • [Presentation] ネッタイツメガエル近交系4系統のゲノム解読と系統間の遺伝的変異2019

    • Author(s)
      井川 武,松波雅俊,今村美菜子,鈴木 誠,鈴木 菜花,柏木 昭彦,柏木 啓子,越智陽城,前田士郎,荻野 肇
    • Organizer
      第13回日本ツメガエル研究集会
    • Related Report
      2019 Research-status Report
  • [Presentation] 異なる進化系譜における倍加遺伝子の収斂進化2019

    • Author(s)
      田内 幹大,井川 武,鈴木 誠,鈴木 菜花,荻野 肇
    • Organizer
      第13回日本ツメガエル研究集会
    • Related Report
      2019 Research-status Report
  • [Presentation] 両生類研究センターにおけるトランスジェニックツメガエルの開発と収集2019

    • Author(s)
      鈴木 誠,井川 武,鈴木 菜花,越智陽城,荻野 肇
    • Organizer
      第13回日本ツメガエル研究集会
    • Related Report
      2019 Research-status Report
  • [Presentation] The 4th National BioResource Project of Xenopus tropicalis2019

    • Author(s)
      Igawa, T., Kashiwagi, A., Kashiwagi, K., Suzuki, N., Suzuki, M., Tazawa, I., Furuno, N., Ochi, H., Kato, T., Mori, T. and Ogino, H
    • Organizer
      第52回日本発生生物学会大会
    • Related Report
      2019 Research-status Report
  • [Presentation] 温泉ガエルから温度適応の不思議に迫る2019

    • Author(s)
      井川 武
    • Organizer
      動物学会関東支部 公開シンポジウム「挑戦する両生類:カエル・イモリを使った研究の最前線」
    • Related Report
      2018 Research-status Report
    • Invited
  • [Presentation] The 4th National BioResource Project of Xenopus tropicalis2018

    • Author(s)
      Igawa T, Kashiwagi A, Kashiwagi K, Tazawa I, Furuno N, Ochi H, Kato T, Mori T, Ogino H.
    • Organizer
      第70回日本細胞生物学会・第51回日本発生生物学会合同大会
    • Related Report
      2018 Research-status Report
  • [Presentation] The wild-type Xenopus laevis is an asymptomatic carrier of aniridia-like pax6 mutations2018

    • Author(s)
      Iwata Y, Tanouchi M, Igawa T, Sakagami K, Ochi H, Ogino H.
    • Organizer
      第70回日本細胞生物学会・第51回日本発生生物学会合同大会
    • Related Report
      2018 Research-status Report
  • [Presentation] The hypomorphic mutations hidden in the allotetraploid genome of Xenopus laevis2018

    • Author(s)
      Tanouchi M, Ochi H, Kawaguchi A, Igawa T, Iwata Y, Sakagami K, Ogino H
    • Organizer
      第70回日本細胞生物学会・第51回日本発生生物学会合同大会
    • Related Report
      2018 Research-status Report
  • [Presentation] Revisiting Bergmann’s rule: temperature adaptation and its evolutionary significance of the Japanese and Ryukyu bell-ring frogs” (Workshop: Cell and Molecular Mechanisms leading to the morphological diversity of vertebrates)2018

    • Author(s)
      Igawa T, Ogino H.
    • Organizer
      第41回日本分子生物学会年会
    • Related Report
      2018 Research-status Report
    • Invited
  • [Presentation] The functional domain-localized mutations hidden in the allotetraploid genome of Xenopus laevis2018

    • Author(s)
      Tanouchi M, Iwata Y, Igawa T, Sakagami K, Suzuki N, Ogino H.
    • Organizer
      第41回日本分子生物学会年会
    • Related Report
      2018 Research-status Report
  • [Presentation] 温泉ガエルの発見:リュウキュウカジカガエルの高温耐性メカニズムの解明に向けて2018

    • Author(s)
      井川 武, 荻野 肇
    • Organizer
      第3回バイオサーモロジーワークショップ
    • Related Report
      2018 Research-status Report
    • Invited
  • [Remarks] Takeshi Igawa, Ph.D.

    • URL

      https://home.hiroshima-u.ac.jp/~tigawa/

    • Related Report
      2020 Annual Research Report 2019 Research-status Report 2018 Research-status Report

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Published: 2018-04-23   Modified: 2022-01-27  

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