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Phylogeography of evergreen Fagaceae trees in the warm temperate zone in Japan using genomic approach

Research Project

Project/Area Number 18K06381
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Review Section Basic Section 45030:Biodiversity and systematics-related
Research InstitutionOsaka University

Principal Investigator

Aoki Kyoko  大阪大学, 大学院連合小児発達学研究科, 寄附講座助教 (70378537)

Project Period (FY) 2018-04-01 – 2023-03-31
Project Status Completed (Fiscal Year 2022)
Budget Amount *help
¥4,290,000 (Direct Cost: ¥3,300,000、Indirect Cost: ¥990,000)
Fiscal Year 2021: ¥650,000 (Direct Cost: ¥500,000、Indirect Cost: ¥150,000)
Fiscal Year 2020: ¥1,040,000 (Direct Cost: ¥800,000、Indirect Cost: ¥240,000)
Fiscal Year 2019: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2018: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Keywords照葉樹林 / レフュジア / 遺伝的多様性 / 次世代シーケンス / 分子生物地理 / 種内の遺伝的変異 / 生物地理 / 分子植物地理 / 系統地理 / 分子植物地理学
Outline of Final Research Achievements

We investigated the demographic history of the broadleaved evergreen trees Castanopsis and Quercus (Fagaceae) during the last glacial period in Japan using EST- associated microsatellites or restriction site associated DNA sequence. In C. sieboldii, we used approximate Bayesian computation for model comparison and parameter estimation for the demographic modeling. The results strongly support a demographic scenario that the Ryukyu Islands and the western parts in the main islands were derived from separate refugia and the eastern parts in the main islands and the Japan Sea groups were diverged from the western parts prior to the coldest stage of the Last Glacial Maximum (LGM). Our data indicate that multiple refugia survived at least one in the Ryukyu Islands, and the other three regions of the western and eastern parts and around the Japan Sea of the main islands of Japan during the LGM.

Academic Significance and Societal Importance of the Research Achievements

日本列島に分布する照葉樹林を構成する植物種について,種内多型量が多く得られる解析方法を用いて集団動態の解析を行うことによって照葉樹林構成種の氷期のレフュジアの位置や規模,その後の変遷過程を推定できた。照葉樹林を構成する複数種の地理的変異パターンを明らかすることで森林生態系の変遷過程を考察することができ,生物地理学的研究の発展へ貢献できる。また,多数の生物種群について地域ごとの遺伝的多様性のあり方が明らかになることで遺伝的多様性の保全や野生生物の移植に対して指針を与えられる。

Report

(6 results)
  • 2022 Annual Research Report   Final Research Report ( PDF )
  • 2021 Research-status Report
  • 2020 Research-status Report
  • 2019 Research-status Report
  • 2018 Research-status Report
  • Research Products

    (6 results)

All 2022 2020 2019 2018 Other

All Journal Article (4 results) (of which Peer Reviewed: 1 results,  Open Access: 1 results) Presentation (1 results) (of which Int'l Joint Research: 1 results,  Invited: 1 results) Remarks (1 results)

  • [Journal Article] 27 シイ類(ブナ科シイ属)2022

    • Author(s)
      青木京子
    • Journal Title

      日本における森林樹木の遺伝的多様性と地理的遺伝構造

      Volume: - Pages: 164-172

    • Related Report
      2022 Annual Research Report
  • [Journal Article] 【第 4 章】各樹種の遺伝的多様性と地理的遺伝構造27 シイ類(ブナ科シイ属)2022

    • Author(s)
      青木京子
    • Journal Title

      日本における森林樹木の遺伝的多様性と地理的遺伝構造

      Volume: - Pages: 155-162

    • Related Report
      2021 Research-status Report
  • [Journal Article] 照葉樹林の基礎情報と歴史2020

    • Author(s)
      服部保・南山典子・浅見佳世・青木京子
    • Journal Title

      兵庫自然研究会報告

      Volume: 5 Pages: 1-44

    • Related Report
      2020 Research-status Report
  • [Journal Article] Approximate Bayesian computation analysis of EST associated microsatellites indicates that the broadleaved evergreen tree Castanopsis sieboldii survived the Last Glacial Maximum in multiple refugia in Japan2019

    • Author(s)
      Kyoko AOKI, Ichiro Tamaki, Katsuhiro Nakao, Saneyoshi Ueno, Takashi Kamijo, Hiroaki Setoguchi, Noriaki Murakami, Makoto Kato, Yoshihiko Tsumura
    • Journal Title

      Heredity

      Volume: 122 Issue: 3 Pages: 326-340

    • DOI

      10.1038/s41437-018-0123-9

    • Related Report
      2019 Research-status Report 2018 Research-status Report
    • Peer Reviewed / Open Access
  • [Presentation] Phylogeography of broadleaved evergreen forests in Japan: parallel histories of Castanopsis and its seed-parasitic insect populations2018

    • Author(s)
      Kyoko AOKI, Noriaki Murakami, Makoto Kato
    • Organizer
      The 2nd International Academic Conference on the Formation Mechanism of Plant Diversity and Conservation of Endangered Plants in East Asia
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research / Invited
  • [Remarks] 日本の常緑広葉樹は最終氷期をどこで生き延びたのか-遺伝的多様性の保全のための新しい根拠-

    • URL

      https://resou.osaka-u.ac.jp/ja/research/2018/20180928_1

    • Related Report
      2018 Research-status Report

URL: 

Published: 2018-04-23   Modified: 2024-01-30  

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