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Evolutionary history of Japan Sea element plants: a comparative phylogeographic approach using genome-wide SNPs

Research Project

Project/Area Number 18K06394
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Review Section Basic Section 45030:Biodiversity and systematics-related
Research InstitutionOchanomizu University (2021-2023)
Kanagawa University (2018-2020)

Principal Investigator

Iwasaki Takaya  お茶の水女子大学, 基幹研究院, 講師 (10636179)

Project Period (FY) 2018-04-01 – 2024-03-31
Project Status Completed (Fiscal Year 2023)
Budget Amount *help
¥4,420,000 (Direct Cost: ¥3,400,000、Indirect Cost: ¥1,020,000)
Fiscal Year 2020: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2019: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Fiscal Year 2018: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Keywords日本海要素 / 地域固有種 / 種分化 / 多雪 / 分子系統地理 / ゲノムワイドSNPs / 系統地理 / 第四紀 / 最終氷期 / 日本列島 / 気候変動 / 集団ゲノミクス / 集団遺伝 / 局所適応 / 進化 / 遺伝構造
Outline of Final Research Achievements

The objective of this study was to elucidate the evolutionary history of the Japan Sea Elements, groups of plants endemic to the Sea of Japan region, characterized by heavy snowfall. We estimated the history of population differentiation based on genome-wide SNPs and changes in distributional ranges, using ecological niche modeling for two species groups. The results showed that despite significantly different divergence times, with Viola diverging in the early Quaternary and Hepatica during the last glacial period, the Japan Sea Elements lineage and a related lineage on the Pacific side have differentiated most recently within each species group. Combined with the results of ecological niche modeling, it appears that the Japan Sea Elements differentiated from their closely related Pacific counterparts, with niche differentiation likely triggered by distributional fragmentation during a glacial period after the Japan Sea climate became dominant in the Quaternary.

Academic Significance and Societal Importance of the Research Achievements

日本列島の狭い地理的範囲の中で積雪量が劇的に変化する日本海側気候は他地域ではほとんどみられない独特なものであり、その環境に適応して進化した可能性がある固有種群の集まりである日本海要素の進化史の解明は日本列島における生物多様性の形成過程を明らかにする上で大きな意義がある。本研究成果からは、第四紀で日本海側気候が卓越するようになった後に、太平洋側に分布する近縁な系統から日本海要素の系統がニッチ分化を伴って分化したことが示唆され、これは日本列島における第四紀種分化プロセスの一つの重要な例になると思われる。

Report

(7 results)
  • 2023 Annual Research Report   Final Research Report ( PDF )
  • 2022 Research-status Report
  • 2021 Research-status Report
  • 2020 Research-status Report
  • 2019 Research-status Report
  • 2018 Research-status Report
  • Research Products

    (11 results)

All 2024 2023 2020 2019 2018 Other

All Int'l Joint Research (1 results) Journal Article (1 results) (of which Open Access: 1 results) Presentation (9 results) (of which Int'l Joint Research: 5 results,  Invited: 2 results)

  • [Int'l Joint Research] Gangneung-Wonju National University(韓国)

    • Related Report
      2023 Annual Research Report
  • [Journal Article] さく葉標本DNAのMIG-seq法による利用可能性・解析手法の検討2019

    • Author(s)
      岩崎貴也, 小玉あすか, 松尾歩, 陶山佳久, 大西亘, 尾関雅章, 中浜直之, 山本薫
    • Journal Title

      Science Journal of Kanagawa University

      Volume: 印刷中

    • Related Report
      2018 Research-status Report
    • Open Access
  • [Presentation] スミレサイシン類の多様化プロセスの解明:地理的隔離とニッチシフトの影響に着目して2024

    • Author(s)
      髙橋弥生, Su-Kil Jang, 藤原正人, 尾関雅章, 岩崎貴也
    • Organizer
      日本植物学会第23回大会(仙台)
    • Related Report
      2023 Annual Research Report
  • [Presentation] Importance of geographic isolation and niche shifts in the diversification of three Japan-endemic Viola Species2024

    • Author(s)
      Yayoi Takahashi
    • Organizer
      Workshop seminar in Japan 2024 “Development of advanced mountain science research and education to establish a vast genetic diversity database”
    • Related Report
      2023 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Comparative phylogeographic study of deciduous broad-leaved trees and their forest floor herbs in Japan2023

    • Author(s)
      Takaya Iwasaki
    • Organizer
      The 10th East Asian Plant Diversity and Conservation Symposium 2023
    • Related Report
      2023 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Molecular phylogenetic and phylogeographic study of subsect. Vaginatae (Violaceae) species in East Asia2023

    • Author(s)
      Yayoi Takahashi, Su-Kil Jang, Masato Fujiwara, Masaaki Ozeki, Takaya Iwasaki
    • Organizer
      The 10th East Asian Plant Diversity and Conservation Symposium 2023
    • Related Report
      2023 Annual Research Report
    • Int'l Joint Research
  • [Presentation] スミレサイシン節5種は日本の氷期間氷期をどう生き残ってきたか:生態ニッチモデリングと集団動態解析から2023

    • Author(s)
      髙橋弥生, 藤原正人, 尾関雅章, 岩崎貴也
    • Organizer
      日本植物学会第87回大会(札幌)
    • Related Report
      2023 Annual Research Report
  • [Presentation] Comparison of diversification histories among four closely related Viola species in Japan2023

    • Author(s)
      Yayoi Takahashi
    • Organizer
      14th Ewha-JWU-Ochanomizu Joint Symposium 2023
    • Related Report
      2023 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 地域固有種に注目したスミレサイシン節の系統分化と集団動態の解明2023

    • Author(s)
      髙橋弥生, 藤原正人, 尾関雅章, 岩崎貴也
    • Organizer
      日本植物分類学会第22回大会(千葉)
    • Related Report
      2022 Research-status Report
  • [Presentation] 植物標本DNAのMIG-seq法による利用可能性・解析手法の検討2020

    • Author(s)
      岩崎貴也
    • Organizer
      日本生態学会第67回全国大会シンポジウム S29. 分子生態学における博物館標本の活用
    • Related Report
      2019 Research-status Report
    • Invited
  • [Presentation] Phylogeographic studies of two wide-distributed Cardamine species (C. impatiens and C. leucantha) based on genome-wide SNPs2018

    • Author(s)
      Takaya Iwasaki, Kiwako S. Araki, Takashi Shiga, Karol Marhold, Atsushi J. Nagano, Yoshihiro Tsunamoto, Yoshihisa Suyama, Valentin V. Yakubov, Renat Sabirov, Jae-Hong Pak, Pan Li, Rie Shimizu-Inatsugu, Kentaro K. Shimizu, Motomi Ito, Hiroshi Kudoh
    • Organizer
      The 2nd International Academic Conference on the Formation Mechanism of Plant Diversity and Conservation of Endangered Plants in East Asia
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research

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Published: 2018-04-23   Modified: 2025-01-30  

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