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Development of small molecule chimeras that recruit a new E3 ligase to target proteins

Research Project

Project/Area Number 18K06567
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Review Section Basic Section 47010:Pharmaceutical chemistry and drug development sciences-related
Research InstitutionNational Institute of Health Sciences

Principal Investigator

Ohoka Nobumichi  国立医薬品食品衛生研究所, 遺伝子医薬部, 室長 (80568519)

Project Period (FY) 2018-04-01 – 2022-03-31
Project Status Completed (Fiscal Year 2021)
Budget Amount *help
¥4,550,000 (Direct Cost: ¥3,500,000、Indirect Cost: ¥1,050,000)
Fiscal Year 2020: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2019: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2018: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
KeywordsPROTAC / ユビキチン / プロテアソーム / 標的タンパク質分解 / キメラ化合物 / E3リガーゼ / プロテインノックダウン法
Outline of Final Research Achievements

Targeted protein degradation using chimeric small molecules (PROTACs and SNIPERs) is an emerging modality in drug discovery. Here, we expand the repertoire of E3 ligases capable of ubiquitylating target proteins using this system. By incorporating β-naphthoflavone (β-NF) as a ligand, we developed a novel class of chimeric molecules that recruit the AhR E3 ligase complex. β-NF-ATRA, a chimeric degrader directed against CRABPs, induced the AhR-dependent degradation of CRABP-1 and CRABP-2 via the ubiquitin-proteasome pathway. A similar compound ITE-ATRA, in which an alternative AhR ligand was used, also degraded CRABP proteins. Finally, we developed a chimeric compound β-NF-JQ1 that is directed against BRD proteins. β-NF-JQ1 induced the interaction of AhR and BRD proteins and displayed effective anticancer activity that correlated with protein knockdown activity. These results demonstrate a novel class of chimeric degrader molecules that recruit an AhR E3 ligase to target proteins.

Academic Significance and Societal Importance of the Research Achievements

プロテインノックダウン法は、リガンドを置換することで様々なタンパク質を標的とすることが可能な汎用性の高い技術である。また、E3リガーゼに関しても様々なE3を利用できると考えられるが、そのために必要なリガンド化合物(E3リガンド)はほとんど見つかっていない。本研究では、標的タンパク質のユビキチン化に利用できるE3リガーゼ(およびE3リガンド)のレパートリーを増やすことに成功した。本成果により、プロテインノックダウン法の汎用性がさらに高まる(標的タンパク質の適応範囲が広がる)ことが期待できる。

Report

(5 results)
  • 2021 Annual Research Report   Final Research Report ( PDF )
  • 2020 Research-status Report
  • 2019 Research-status Report
  • 2018 Research-status Report
  • Research Products

    (39 results)

All 2022 2021 2020 2019 2018 Other

All Journal Article (13 results) (of which Int'l Joint Research: 12 results,  Peer Reviewed: 13 results,  Open Access: 9 results) Presentation (22 results) (of which Int'l Joint Research: 1 results,  Invited: 2 results) Book (3 results) Remarks (1 results)

  • [Journal Article] Molecular Design, Synthesis, and Evaluation of SNIPER (ER) that Induces Targeted Protein Degradation of ERα2022

    • Author(s)
      Ohoka N, Yokoo H, Okuhira K, Demizu Y, Naito M.
    • Journal Title

      Methods Mol Biol.

      Volume: 2418 Pages: 363-382

    • DOI

      10.1007/978-1-0716-1920-9_20

    • ISBN
      9781071619193, 9781071619209
    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Peptide Stapling Improves the Sustainability of a Peptide-Based Chimeric Molecule That Induces Targeted Protein Degradation2021

    • Author(s)
      Yokoo Hidetomo、Ohoka Nobumichi、Takyo Mami、Ito Takahito、Tsuchiya Keisuke、Kurohara Takashi、Fukuhara Kiyoshi、Inoue Takao、Naito Mikihiko、Demizu Yosuke
    • Journal Title

      International Journal of Molecular Sciences

      Volume: 22 Issue: 16 Pages: 8772-8772

    • DOI

      10.3390/ijms22168772

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Development of Chimeric Molecules That Degrade the Estrogen Receptor Using Decoy Oligonucleotide Ligands2021

    • Author(s)
      Naganuma M, Ohoka N, Tsuji G, Tsujimura H, Matsuno K, Inoue T, Naito M, Demizu Y.
    • Journal Title

      ACS Med Chem Lett.

      Volume: 13 Issue: 1 Pages: 134-139

    • DOI

      10.1021/acsmedchemlett.1c00629

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Design and synthesis of peptide-based chimeric molecules to induce degradation of the estrogen and androgen receptors2020

    • Author(s)
      Yokoo Hidetomo、Ohoka Nobumichi、Naito Mikihiko、Demizu Yosuke
    • Journal Title

      Bioorganic & Medicinal Chemistry

      Volume: 28 Issue: 15 Pages: 115595-115595

    • DOI

      10.1016/j.bmc.2020.115595

    • Related Report
      2020 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Targeted Protein Degradation by Chimeric Compounds using Hydrophobic E3 Ligands and Adamantane Moiety.2020

    • Author(s)
      Shoda T, Ohoka N, Tsuji G, Fujisato T, Inoue H, Demizu Y, Naito M, Kurihara M.
    • Journal Title

      Pharmaceuticals (Basel).

      Volume: 13 Issue: 3 Pages: 34-34

    • DOI

      10.3390/ph13030034

    • Related Report
      2019 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Different Degradation Mechanisms of Inhibitor of Apoptosis Proteins (IAPs) by the Specific and Nongenetic IAP-Dependent Protein Eraser (SNIPER)2019

    • Author(s)
      Ohoka Nobumichi、Ujikawa Osamu、Shimokawa Kenichiro、Sameshima Tomoya、Shibata Norihito、Hattori Takayuki、Nara Hiroshi、Cho Nobuo、Naito Mikihiko
    • Journal Title

      Chemical and Pharmaceutical Bulletin

      Volume: 67 Issue: 3 Pages: 203-209

    • DOI

      10.1248/cpb.c18-00567

    • NAID

      130007607114

    • ISSN
      0009-2363, 1347-5223
    • Year and Date
      2019-03-01
    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Development of a Potent Protein Degrader against Oncogenic BCR-ABL Protein2019

    • Author(s)
      Shibata Norihito、Ohoka Nobumichi、Hattori Takayuki、Naito Mikihiko
    • Journal Title

      Chemical and Pharmaceutical Bulletin

      Volume: 67 Issue: 3 Pages: 165-172

    • DOI

      10.1248/cpb.c18-00703

    • NAID

      130007606378

    • ISSN
      0009-2363, 1347-5223
    • Year and Date
      2019-03-01
    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Targeted Protein Degradation by Chimeric Small Molecules, PROTACs and SNIPERs.2019

    • Author(s)
      Naito M, Ohoka N, Shibata N, Tsukumo Y.
    • Journal Title

      Front Chem.

      Volume: 7 Pages: 849-849

    • DOI

      10.3389/fchem.2019.00849

    • Related Report
      2019 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Development of small molecule chimeric degraders that bring target proteins and the aryl hydrocarbon receptor (AhR) E3 ligase into close proximity2019

    • Author(s)
      N. Ohoka, G. Tsuji, T. Shoda, T. Fujisato, M. Kurihara, Y. Demizu, M. Naito*
    • Journal Title

      ACS Chem. Biol.

      Volume: 14 Issue: 12 Pages: 2822-2832

    • DOI

      10.1021/acschembio.9b00704

    • Related Report
      2019 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] SNIPERs - Hijacking IAP activity to induce protein degradation.2019

    • Author(s)
      Naito M, Ohoka N, Shibata N.
    • Journal Title

      Drug Discovery Today: Technology

      Volume: 印刷中 Pages: 481-488

    • DOI

      10.1016/j.ddtec.2018.12.002

    • Related Report
      2019 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Development of Protein Knockdown Technology as Emerging Drug Discovery Strategy2018

    • Author(s)
      Ohoka Nobumichi
    • Journal Title

      YAKUGAKU ZASSHI

      Volume: 138 Issue: 9 Pages: 1135-1143

    • DOI

      10.1248/yakushi.18-00113

    • NAID

      130007474947

    • ISSN
      0031-6903, 1347-5231
    • Year and Date
      2018-09-01
    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Derivatization of inhibitor of apoptosis protein (IAP) ligands yields improved inducers of estrogen receptor α degradation2018

    • Author(s)
      Ohoka Nobumichi、Morita Yoko、Nagai Katsunori、Shimokawa Kenichiro、Ujikawa Osamu、Fujimori Ikuo、Ito Masahiro、Hayase Youji、Okuhira Keiichiro、Shibata Norihito、Hattori Takayuki、Sameshima Tomoya、Sano Osamu、Koyama Ryokichi、Imaeda Yasuhiro、Nara Hiroshi、Cho Nobuo、Naito Mikihiko
    • Journal Title

      Journal of Biological Chemistry

      Volume: 293 Issue: 18 Pages: 6776-6790

    • DOI

      10.1074/jbc.ra117.001091

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Pharmacological difference between degrader and inhibitor against oncogenic BCR-ABL kinase2018

    • Author(s)
      Shibata Norihito、Shimokawa Kenichiro、Nagai Katsunori、Ohoka Nobumichi、Hattori Takayuki、Miyamoto Naoki、Ujikawa Osamu、Sameshima Tomoya、Nara Hiroshi、Cho Nobuo、Naito Mikihiko
    • Journal Title

      Scientific Reports

      Volume: 8 Issue: 1 Pages: 13549-13549

    • DOI

      10.1038/s41598-018-31913-5

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Presentation] BRAF遺伝子変異陽性がんに対するBRAFタンパク質分解誘導薬の開発2022

    • Author(s)
      大岡伸通, 内田琢也, 鈴木正則, 築茂由則,井上貴雄, 吉田将之, 大木仁, 内藤幹彦
    • Organizer
      日本薬学会第142回年会
    • Related Report
      2021 Annual Research Report
  • [Presentation] BRAF遺伝子変異陽性がんに対するBRAF分解誘導キメラ化合物の開発2021

    • Author(s)
      大岡伸通, 築茂由則, 井上貴雄, 内藤幹彦
    • Organizer
      第25回日本がん分子標的治療学会学術集会
    • Related Report
      2021 Annual Research Report
  • [Presentation] BRAF遺伝子変異陽性がんに対するBRAF分解誘導キメラ化合物の開発,2021

    • Author(s)
      大岡伸通, 築茂由則, 内藤幹彦
    • Organizer
      第80回日本癌学会学術総会
    • Related Report
      2021 Annual Research Report
  • [Presentation] デコイ核酸を利用したタンパク質分解誘導キメラ分子の開発2021

    • Author(s)
      大岡伸通,永沼美弥子,辻厳一郎,井上貴雄,出水庸介
    • Organizer
      第44回日本分子生物学会年会
    • Related Report
      2021 Annual Research Report
  • [Presentation] Development of chimeric compounds to induce FLT3 degradation for acute myeloid leukemia.2020

    • Author(s)
      大岡伸通, 柴田識人, 築茂由則, 内藤幹彦
    • Organizer
      第79回日本癌学会総会
    • Related Report
      2020 Research-status Report
  • [Presentation] 急性骨髄性白血病に対するFLT3分解誘導キメラ化合物の開発2020

    • Author(s)
      大岡伸通, 内藤幹彦
    • Organizer
      第25回日本がん分子標的治療学会学術集会
    • Related Report
      2020 Research-status Report
  • [Presentation] 1.Targeted protein degradation by chimeric small molecules that recruit new E3 ligase.2020

    • Author(s)
      大岡伸通, 内藤幹彦
    • Organizer
      第93回日本生化学会大会
    • Related Report
      2020 Research-status Report
    • Invited
  • [Presentation] 非天然型アミノ酸を有するヘリカルペプチドを利用したタンパク質分解誘導キメラ分子の開発2020

    • Author(s)
      大岡伸通,横尾英知,内藤幹彦,井上貴雄,出水庸介
    • Organizer
      第43回日本分子生物学会年会
    • Related Report
      2020 Research-status Report
  • [Presentation] ペプチドリガンドを利用したタンパク質分解誘導キメラ分子の開発2020

    • Author(s)
      大岡伸通, 横尾英知, 井上貴雄, 出水庸介
    • Organizer
      日本薬学会第141回年会
    • Related Report
      2020 Research-status Report
  • [Presentation] 核内受容体を標的とするペプチド型分解誘導剤の開発2020

    • Author(s)
      伊藤貴仁,横尾英知,大岡伸通,内藤幹彦,井上貴雄,出水庸介
    • Organizer
      日本薬学会第141回年会
    • Related Report
      2020 Research-status Report
  • [Presentation] デコイ核酸をリガンドとしたエストロゲン受容体分解誘導剤の創製2020

    • Author(s)
      永沼美弥子,辻村はるな,大岡伸通,松野研司,須原義智,内藤幹彦,井上貴雄,辻厳一郎,出水庸介
    • Organizer
      日本薬学会第141回年会
    • Related Report
      2020 Research-status Report
  • [Presentation] アプタマーをリガンドとしたエストロゲン受容体分解誘導剤の創製2020

    • Author(s)
      辻村はるな,永沼美弥子,大岡伸通,須原義智,松野研司,内藤幹彦,井上貴雄,辻厳一郎,出水庸介
    • Organizer
      日本薬学会第141回年会
    • Related Report
      2020 Research-status Report
  • [Presentation] LXRを標的とした分解誘導剤の開発2020

    • Author(s)
      許涵喬,辻厳一郎,大岡伸通,内藤幹彦,出水庸介
    • Organizer
      日本薬学会第141回年会
    • Related Report
      2020 Research-status Report
  • [Presentation] 新しいユビキチンリガーゼをリクルートして標的蛋白質を分解するキメラ化合物の開発と抗がん剤としての可能性2019

    • Author(s)
      大岡伸通, 内藤幹彦
    • Organizer
      第24回日本がん分子標的治療学会学術集会
    • Related Report
      2019 Research-status Report
  • [Presentation] 新しいユビキチンリガーゼを標的蛋白質にリクルートして分解する低分子化合物の開発2019

    • Author(s)
      大岡伸通, 内藤幹彦
    • Organizer
      第78回日本癌学会学術総会
    • Related Report
      2019 Research-status Report
  • [Presentation] 新しい創薬パラダイム-狙ったタンパク質を特異的に分解する低分子薬の開発-2019

    • Author(s)
      大岡伸通
    • Organizer
      化学フェスタ
    • Related Report
      2019 Research-status Report
    • Invited
  • [Presentation] Development of small molecule chimeras that recruit aryl-hydrocarbon receptor (AhR) E3 ligase to induce degradation of target proteins2019

    • Author(s)
      Ohoka N, Tsuji G, Shoda T, Fujisato T, Kurihara M, Demizu Y, Naito M.
    • Organizer
      AACR-NCI-EORTC International Conference on Molecular Targets and Cancer Therapeutics
    • Related Report
      2019 Research-status Report
    • Int'l Joint Research
  • [Presentation] 新たなユビキチンリガーゼを利用して標的タンパク質を分解するキメラ化合物の開発2019

    • Author(s)
      大岡伸通
    • Organizer
      第2回ユビキチン研究会
    • Related Report
      2018 Research-status Report
  • [Presentation] 新たなユビキチンリガーゼを標的タンパク質にリクルートして分解するキメラ化合物の開発2019

    • Author(s)
      大岡伸通, 辻厳一郎, 正田卓司, 出水庸介, 内藤幹彦
    • Organizer
      日本薬学会第139年会
    • Related Report
      2018 Research-status Report
  • [Presentation] SNIPERのIAPリガンド誘導体化によるプロテインノックダウン活性及び抗がん活性の改善2018

    • Author(s)
      大岡伸通, 服部隆行, 内藤幹彦
    • Organizer
      第22回日本がん分子標的治療学会学術集会
    • Related Report
      2018 Research-status Report
  • [Presentation] SNIPERのIAPリガンド誘導体化によるプロテインノックダウン活性及び抗がん活性の改善2018

    • Author(s)
      大岡伸通, 服部隆行, 内藤幹彦
    • Organizer
      第77回日本癌学会学術総会
    • Related Report
      2018 Research-status Report
  • [Presentation] 芳香族炭化水素受容体ユビキチンリガーゼを利用する新しいプロテインノックダウン技術の開発2018

    • Author(s)
      大岡伸通, 辻厳一郎, 正田卓司, 藤里卓磨, 出水庸介, 内藤幹彦
    • Organizer
      第41回日本分子生物学会年会
    • Related Report
      2018 Research-status Report
  • [Book] 実験医学増刊, 標的タンパク質を分解する新しい低分子医薬モダリティ2020

    • Author(s)
      大岡伸通, 内藤幹彦
    • Total Pages
      7
    • Publisher
      羊土社
    • ISBN
      9784758103893
    • Related Report
      2020 Research-status Report
  • [Book] 実験医学2020年9月号, キメラ化合物PROTAC/SNIPERの作用機序と新たな開発の動向2020

    • Author(s)
      大岡伸通, 内藤幹彦
    • Total Pages
      5
    • Publisher
      羊土社
    • ISBN
      9784758125352
    • Related Report
      2020 Research-status Report
  • [Book] 実験医学2018年11月号(Next Tech Review)2018

    • Author(s)
      大岡伸通, 内藤幹彦
    • Total Pages
      8
    • Publisher
      羊土社
    • ISBN
      9784758125130
    • Related Report
      2018 Research-status Report
  • [Remarks] 国立医薬品食品衛生研究所 遺伝子医薬部 ホームページ

    • URL

      http://www.nihs.go.jp/mtgt/index.html

    • Related Report
      2020 Research-status Report

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Published: 2018-04-23   Modified: 2023-01-30  

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