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Application of high-precision denoising technique with deep learning to neuroimaging research

Research Project

Project/Area Number 18K07712
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Review Section Basic Section 52040:Radiological sciences-related
Research InstitutionKyoto University

Principal Investigator

Oishi Naoya  京都大学, 医学研究科, 特定准教授 (40526878)

Co-Investigator(Kenkyū-buntansha) 藤原 宏志  京都大学, 情報学研究科, 准教授 (00362583)
鈴木 崇士  京都大学, 医学研究科, 特定助教 (10572224)
杉原 玄一  京都大学, 医学研究科, 助教 (70402261)
Project Period (FY) 2018-04-01 – 2021-03-31
Project Status Completed (Fiscal Year 2020)
Budget Amount *help
¥4,420,000 (Direct Cost: ¥3,400,000、Indirect Cost: ¥1,020,000)
Fiscal Year 2020: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2019: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2018: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Keywords深層学習 / MRI / 脳 / 精神神経疾患 / ノイズ除去 / GPGPU / 医用画像工学
Outline of Final Research Achievements

In order to improve the signal-to-noise ratio in neuroimaging research, we have newly developed a deep learning-based high-precision denoising algorithm for brain MRI. For small animals, the usefulness of denoising in morphological MRI of psychiatric model rats was clarified. Furthermore, by extending the method, we succeeded in improving the prognosis prediction performance of patients with neuropsychiatric disorders. Thus, we have clarified the usefulness of the deep learning-based high-precision denoising algorithm developed this time for both basic and clinical applications.

Academic Significance and Societal Importance of the Research Achievements

柔軟性・拡張性の高い深層学習ベースのノイズ除去アルゴリズムを新規に開発し、精神疾患モデルラットの形態MRIに応用することで従来検出しえなかった微小領域の変化を捉えることに成功した点は学術的意義が高いと考えられる。また、本手法を拡張することでMRIから縮約された情報を抽出させ、精神神経疾患患者の予後予測性能向上を果たした点は将来的な臨床応用という観点で社会的意義も高い。

Report

(4 results)
  • 2020 Annual Research Report   Final Research Report ( PDF )
  • 2019 Research-status Report
  • 2018 Research-status Report
  • Research Products

    (35 results)

All 2020 2019 2018

All Journal Article (18 results) (of which Int'l Joint Research: 1 results,  Peer Reviewed: 18 results,  Open Access: 17 results) Presentation (17 results) (of which Int'l Joint Research: 15 results,  Invited: 3 results)

  • [Journal Article] Autistic traits are associated with the functional connectivity of between?but not within?attention systems in the general population2020

    • Author(s)
      Yoshimura Sayaka、Kobayashi Kei、Ueno Tsukasa、Miyagi Takashi、Oishi Naoya、Murai Toshiya、Fujiwara Hironobu
    • Journal Title

      BMC Neuroscience

      Volume: 21 Issue: 1 Pages: 49-49

    • DOI

      10.1186/s12868-020-00603-2

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Intact in vivo visualization of telencephalic microvasculature in medaka using optical coherence tomography2020

    • Author(s)
      Suzuki Takashi、Ueno Tomohiro、Oishi Naoya、Fukuyama Hidenao
    • Journal Title

      Scientific Reports

      Volume: 10 Issue: 1 Pages: 19831-19831

    • DOI

      10.1038/s41598-020-76468-6

    • NAID

      120006898162

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] <p>Spatial Patterns of Amyloid Deposition in Patients with Chronic Focal or Diffuse Traumatic Brain Injury Using <sup>18</sup>F-FPYBF-2 PET</p>2020

    • Author(s)
      Ubukata Shiho、Oishi Naoya、Higashi Tatsuya、Kagawa Shinya、Yamauchi Hiroshi、Okuyama Chio、Watanabe Hiroyuki、Ono Masahiro、Saji Hideo、Aso Toshihiko、Murai Toshiya、Ueda Keita
    • Journal Title

      Neuropsychiatric Disease and Treatment

      Volume: Volume 16 Pages: 2719-2732

    • DOI

      10.2147/ndt.s268504

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Psychological resilience is correlated with dynamic changes in functional connectivity within the default mode network during a cognitive task2020

    • Author(s)
      Miyagi Takashi、Oishi Naoya、Kobayashi Kei、Ueno Tsukasa、Yoshimura Sayaka、Murai Toshiya、Fujiwara Hironobu
    • Journal Title

      Scientific Reports

      Volume: 10 Issue: 1 Pages: 17760-17760

    • DOI

      10.1038/s41598-020-74283-7

    • NAID

      120007006217

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Relationship between media multitasking and functional connectivity in the dorsal attention network2020

    • Author(s)
      Kobayashi Kei、Oishi Naoya、Yoshimura Sayaka、Ueno Tsukasa、Miyagi Takashi、Murai Toshiya、Fujiwara Hironobu
    • Journal Title

      Scientific Reports

      Volume: 10 Issue: 1 Pages: 17992-17992

    • DOI

      10.1038/s41598-020-75091-9

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Deep learning-derived high-level neuroimaging features predict clinical outcomes for large vessel occlusion2020

    • Author(s)
      Nishi H, *Oishi N, Ishii A, Ono I, Ogura T, Sunohara T, Chihara H, Fukumitsu R, Okawa M, Yamana N, Imamura H, Sadamasa N, Hatano T, Nakahara I, Sakai N, Miyamoto S
    • Journal Title

      Stroke

      Volume: 51 Issue: 5 Pages: 1484-1492

    • DOI

      10.1161/strokeaha.119.028101

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] 境界積分によるX線計算機断層撮影法の正則化2020

    • Author(s)
      *藤原宏志、大石直也
    • Journal Title

      計算数理工学論文集(JASCOME)

      Volume: 20 Pages: 04-201219

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Misery perfusion and amyloid deposition in atherosclerotic major cerebral artery disease2019

    • Author(s)
      Yamauchi Hiroshi、Kagawa Shinya、Takahashi Masaaki、Oishi Naoya、Ono Masahiro、Higashi Tatsuya
    • Journal Title

      NeuroImage: Clinical

      Volume: 22 Pages: 101762-101762

    • DOI

      10.1016/j.nicl.2019.101762

    • Related Report
      2019 Research-status Report 2018 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Martial arts “Kendo” and the motivation network during attention processing: an fMRI study2019

    • Author(s)
      Fujiwara H, Ueno T, Yoshimura S, Kobayashi K, Miyagi T, Oishi N, Murai T
    • Journal Title

      Front. Hum. Neurosci.

      Volume: 13 Pages: 170-170

    • DOI

      10.3389/fnhum.2019.00170

    • NAID

      120006773155

    • Related Report
      2019 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Predicting clinical outcomes of large vessel occlusion before mechanical thrombectomy using machine learning2019

    • Author(s)
      Nishi H, Oishi N, Ishii A, Ono I, Ogura T, Sunohara T, Chihara H, Fukumitsu R, Okawa M, Yamana N, Imamura H, Sadamasa N, Hatano T, Nakahara I, Sakai N, Miyamoto S
    • Journal Title

      Stroke

      Volume: 50 Pages: 2379-2388

    • Related Report
      2019 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Nigrostriatal Dopaminergic Dysfunction And Altered Functional Connectivity In REM Sleep Behaviour Disorder With Mild Motor Impairment2019

    • Author(s)
      Yamada G, Ueki Y, Oishi N, Oguri T, Fukui A, Nakayama M, Kandori A, Sano Y, Kan H, Arai N, Sakurai K, Wada I, Matsukawa N
    • Journal Title

      Front. Neurol.

      Volume: 10 Pages: 802-802

    • DOI

      10.3389/fneur.2019.00802

    • Related Report
      2019 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Transcallosal Fiber Disruption and its Relationship with Corresponding Gray Matter Alteration in Patients with Diffuse Axonal Injury2018

    • Author(s)
      Ubukata Shiho、Oishi Naoya、Sugihara Genichi、Aso Toshihiko、Fukuyama Hidenao、Murai Toshiya、Ueda Keita
    • Journal Title

      Journal of Neurotrauma

      Volume: - Issue: 7 Pages: 1106-1114

    • DOI

      10.1089/neu.2018.5823

    • Related Report
      2019 Research-status Report 2018 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] 18F-FPYBF-2, a new F-18-labelled amyloid imaging PET tracer: first experience in 61 volunteers and 55 patients with dementia2018

    • Author(s)
      Higashi Tatsuya、Nishii Ryuichi、Kagawa Shinya、Kishibe Yoshihiko、Takahashi Masaaki、Okina Tomoko、Suzuki Norio、Hasegawa Hiroshi、Nagahama Yasuhiro、Ishizu Koichi、Oishi Naoya、Kimura Hiroyuki、Watanabe Hiroyuki、Ono Masahiro、Saji Hideo、Yamauchi Hiroshi
    • Journal Title

      Ann Nucl Med

      Volume: 32 Issue: 3 Pages: 206-216

    • DOI

      10.1007/s12149-018-1236-1

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] 18F-FPYBF-2, a new F-18 labelled amyloid imaging PET tracer: biodistribution and radiation dosimetry assessment of first-in-man 18F-FPYBF-2 PET imaging2018

    • Author(s)
      Nishii Ryuichi、Higashi Tatsuya、Kagawa Shinya、Okuyama Chio、Kishibe Yoshihiko、Takahashi Masaaki、Okina Tomoko、Suzuki Norio、Hasegawa Hiroshi、Nagahama Yasuhiro、Ishizu Koichi、Oishi Naoya、Kimura Hiroyuki、Watanabe Hiroyuki、Ono Masahiro、Saji Hideo、Yamauchi Hiroshi
    • Journal Title

      Ann Nucl Med

      Volume: 32 Issue: 4 Pages: 256-263

    • DOI

      10.1007/s12149-018-1240-5

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Sex-specific regional grey matter volume correlates of daily activities2018

    • Author(s)
      Ueno Tsukasa、Oishi Naoya、Murai Toshiya
    • Journal Title

      Scientific Reports

      Volume: 8 Issue: 1 Pages: 1-11

    • DOI

      10.1038/s41598-018-28252-w

    • NAID

      120006489935

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Montreal Cognitive Assessment score correlates with regional cerebral blood flow in post-stroke patients2018

    • Author(s)
      Nakaoku Yuriko、Oishi Naoya、Hase Yoshiki、Hase Mai、Saito Satoshi、Mitsueda Takahiro、Matsui Masaru、Toyoda Kazunori、Nagatsuka Kazuyuki、Kalaria Raj N.、Fukuyama Hidenao、Ihara Masafumi、Takahashi Ryosuke
    • Journal Title

      Clinical Neurology and Neurosurgery

      Volume: 174 Pages: 68-74

    • DOI

      10.1016/j.clineuro.2018.09.004

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Simultaneous infrared thermal imaging and laser speckle imaging of brain temperature and cerebral blood flow in rats2018

    • Author(s)
      Suzuki Takashi、Oishi Naoya、Fukuyama Hidenao
    • Journal Title

      Journal of Biomedical Optics

      Volume: 24 Issue: 03 Pages: 1-1

    • DOI

      10.1117/1.jbo.24.3.031014

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Neural correlates of non-clinical internet use in the motivation network and its modulation by subclinical autistic traits2018

    • Author(s)
      Fujiwara, Hironobu
    • Journal Title

      Frontiers in Human Neuroscience

      Volume: 12 Pages: 1-11

    • DOI

      10.3389/fnhum.2018.00493

    • NAID

      120006547377

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Open Access
  • [Presentation] MRI の機械学習による認知症の鑑別診断2020

    • Author(s)
      大石直也
    • Organizer
      第39回日本認知症学会学術集会
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] 心房細動患者における機械学習を用いた脳卒中発症予測2020

    • Author(s)
      西 秀久、大石 直也、赤尾 昌治、小川 尚、岸田 夏枝、土井 健人、川上 理、青木 友和、福田 俊一、塚原 徹也
    • Organizer
      第79回日本脳神経外科学会総会
    • Related Report
      2020 Annual Research Report
  • [Presentation] In vivo Optical Coherence Tomography of cerebral microvessels in medaka2020

    • Author(s)
      Takashi Suzuki, Tomohiro Ueno, Naoya Oishi, Hidenao Fukuyama
    • Organizer
      SPIE Photonics West BIOS
    • Related Report
      2019 Research-status Report
    • Int'l Joint Research
  • [Presentation] Gender Difference in End- of Life Caregiving2019

    • Author(s)
      Kazuko Hiyoshi, Carl Becker, Hidenao Fukuyama, Naoya Oishi
    • Organizer
      WONCA 2019
    • Related Report
      2019 Research-status Report
    • Int'l Joint Research
  • [Presentation] Predicting clinical outcomes of acute ischemic stroke due to large vessel occlusion: The approach to utilize neuroimaging data with deep learning2019

    • Author(s)
      Hidehisa Nishi, Naoya Oishi, Akira Ishii, Isao Ono, Takenori Ogura, Tadashi Sunohara, Hideo Chihara, Ryu Fukumitsu, Masakazu Okawa, Norikazu Yamana, Hirotoshi Imamura, Nobutake Sadamasa, Taketo Hatano, Ichiro Nakahara, Nobuyuki Sakai,Susumu Miyamoto
    • Organizer
      East Asian Conference on Neurointervention (EACoN) 2019
    • Related Report
      2019 Research-status Report
    • Int'l Joint Research
  • [Presentation] Psychological resilience and functional connectivity change of the default mode network2019

    • Author(s)
      Takashi Miyagi, Naoya Oishi, Kei Kobayashi, Tsukasa Ueno, Sayaka Yoshimura, Toshiya Murai, Hironobu Fujiwara
    • Organizer
      ISSID 2019
    • Related Report
      2019 Research-status Report
    • Int'l Joint Research
  • [Presentation] The association between non-clinical internet use and functional connectivity of the alerting network in attention system2019

    • Author(s)
      Kei Kobayashi, Hironobu Fujiwara, Naoya Oishi, Sayaka Yoshimura, Tsukasa Ueno, Takashi Miyagi, Toshiya Murai
    • Organizer
      ISSID 2019
    • Related Report
      2019 Research-status Report
    • Int'l Joint Research
  • [Presentation] Autistic Traits Are Associated with the Functional Connectivity of Between-But Not Within- Attention Systems in the General Population2019

    • Author(s)
      Sayaka Yoshimura, Hironobu Fujiwara, Kei Kobayashi, Tsukasa Ueno, Takashi Miyagi, Naoya Oishi, Toshiya Murai
    • Organizer
      ISSID 2019
    • Related Report
      2019 Research-status Report
    • Int'l Joint Research
  • [Presentation] Contribution of the orbitofrontal cortex to inference based on specific stimulus-reward relationships2019

    • Author(s)
      Masaaki Ogawa, Seiya Ishino, Kota Tokuoka, Tadashi Isa, Brian D. Allen, Amy S. Chuong , Edward S. Boyden, Naoya Oishi, Im Snaghun, Takeshi Yamada
    • Organizer
      Society for Neuroscience 2019
    • Related Report
      2019 Research-status Report
    • Int'l Joint Research
  • [Presentation] Predicting clinical outcomes of acute ischemic stroke due to large vessel occlusion: The approach to utilize high-dimensional neuroimaging data as a whole with deep learning2019

    • Author(s)
      Hidehisa Nishi, Naoya Oishi, Akira Ishii, Isao Ono, Takehiro Katano, Yu Abekura, Hideo Chihara, Yukihiro Yamao, Masakazu Okawa, Takayuki Kikuchi, Taketo Hatano, Ichiro Nakahara, Susumu Miyamoto
    • Organizer
      International Stroke Conference 2019
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research
  • [Presentation] The association between autistic traits and internet use in attention networks: a resting state fMRI study.2018

    • Author(s)
      Hironobu Fujiwara, Sayaka Yoshimura, Kei Kobayashi, Tsukasa Ueno, Naoya Oishi, Toshiya Murai
    • Organizer
      IACAPAP 2018
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research
  • [Presentation] Autistic traits in general population are associated with functional connectivity among the brain regions related to the attentional orienting network2018

    • Author(s)
      Sayaka Yoshimura, Hironobu Fujiwara, Kei Kobayashi, Tsukasa Ueno, Naoya Oishi, Toshiya Murai
    • Organizer
      IACAPAP 2018
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research
  • [Presentation] Near-infrared hyperspectral imaging in biomedicine2018

    • Author(s)
      Naoya Oishi
    • Organizer
      International Conference on Complex Medical Engineering 2018
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] Visualization of microvessels in medaka brain using optical coherence tomography2018

    • Author(s)
      Takashi Suzuki, Tomohiro Ueno, Naoya Oishi and Hidenao Fukuyama
    • Organizer
      International Conference on Complex Medical Engineering 2018
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] Brainstem atrophy and cognitive impairment in the chronic phase and clinical severity in the acute phase in diffuse axonal injury2018

    • Author(s)
      Gaku Fujimoto, Shiho Ubukata, Taro Aso, Naoya Oishi, Genichi Sugihara, Toshiya Murai, Keita Ueda
    • Organizer
      WFSBP Asia Pacific Regional Congress of Biological Psychiatry 2018
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research
  • [Presentation] Single-prolonged stress brings brain atrophy in visual cortex and thalamus2018

    • Author(s)
      Takanobu Yoshii, Naoya Oishi, Yuki Sakai, Isao Nishimura, Kenichi Matsuda, Shunji Yamada, Kazuya Ikoma, Masaki Tanaka, Jin Narumoto
    • Organizer
      WFSBP Asia Pacific Regional Congress of Biological Psychiatry 2018
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research
  • [Presentation] Network property of gambling disorder2018

    • Author(s)
      Kosuke Tsurumi, Naoya Oishi, Toshiya Murai, Hidehiko Takahashi
    • Organizer
      International Society for Biomedical Research on Alcoholism 2018
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research

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Published: 2018-04-23   Modified: 2022-01-27  

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