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Molecular, Cellular, and in vivo analysis of SLC12A2, a novel candidate of deafness gene

Research Project

Project/Area Number 18K09336
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Review Section Basic Section 56050:Otorhinolaryngology-related
Research Institution独立行政法人国立病院機構(東京医療センター臨床研究センター)

Principal Investigator

MUTAI Hideki  独立行政法人国立病院機構(東京医療センター臨床研究センター), その他部局等, 研究員 (60415891)

Project Period (FY) 2018-04-01 – 2021-03-31
Project Status Completed (Fiscal Year 2020)
Budget Amount *help
¥4,420,000 (Direct Cost: ¥3,400,000、Indirect Cost: ¥1,020,000)
Fiscal Year 2020: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2019: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Fiscal Year 2018: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Keywords難聴 / 原因遺伝子 / スプライシング / 動物モデル / ゲノム編集 / アッセイ系 / 遺伝性難聴 / モデルマウス
Outline of Final Research Achievements

Aim of this study is to analyze molecular dysfunction of variants of SLC12A2, a novel deafness gene that were identified in our group.
SLC12A2 encodes Na+, K+, 2Cl- cotransporter 1 and plays critical roles in the homeostasis of K+-enriched endolymph. All SLC12A2 candidate pathogenic variants mapped to exon 21 or its 3’-splice site. In this study, all the 3 projects achieved the goals successfully; 1) In vitro functional analysis demonstrated that Cl- influx was significantly decreased in all SLC12A2 variants studied. All variants were properly translocated to plasma membrane, suggesting proper protein folding without degeneration; 2) The in vitro assay system of exon 21 splicing was established; 3) Two mouse strains with each variant of Slc12a2 knocked in were generated by genome editing. Analysis of the KI mice are now ongoing in details.
SLC12A2 is now known as deafness gene DFNA78.

Academic Significance and Societal Importance of the Research Achievements

SLC12A2は、私たちが日本人難聴患者の遺伝子解析から同定した新規難聴原因候補である。本研究の成果により、SLC12A2が真の難聴遺伝子として認識され検査対象に追加されることで、難聴者の原因判明率の向上と、その知見をもととした適切な医療・療育の提供が期待できる。
SLC12A2の病的変異候補は、興味深いことに、すべてexon 21上ミスセンス変異あるいはexon 21のスプライス変異である。この部位の分子機構は未知であり、本研究および継続研究により、本遺伝子の詳細な機能が明らかとなり、学術的発展が期待できる。

Report

(4 results)
  • 2020 Annual Research Report   Final Research Report ( PDF )
  • 2019 Research-status Report
  • 2018 Research-status Report
  • Research Products

    (33 results)

All 2020 2019 2018 Other

All Journal Article (8 results) (of which Int'l Joint Research: 5 results,  Peer Reviewed: 8 results,  Open Access: 7 results) Presentation (20 results) (of which Int'l Joint Research: 6 results) Remarks (5 results)

  • [Journal Article] Variants encoding a restricted carboxy-terminal domain of SLC12A2 cause hereditary hearing loss in humans2020

    • Author(s)
      Mutai H, Wasano K, Momozawa Y, Kamatani Y, Miya F, Masuda S, Morimoto N, Nara K, Takahashi S, Tsunoda T, Homma K, Kubo M, Matsunaga T
    • Journal Title

      Plos Genet

      Volume: 16 Issue: 4 Pages: e1008643-e1008643

    • DOI

      10.1371/journal.pgen.1008643

    • Related Report
      2020 Annual Research Report 2019 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Clinical Profiles of DFNA11 at Diverse Stages of Development and Aging in a Large Family Identified by Linkage Analysis2020

    • Author(s)
      Yamamoto Nobuko、Mutai Hideki、Namba Kazunori、Goto Fumiyuki、Ogawa Kaoru、Matsunaga Tatsuo
    • Journal Title

      Otology & Neurotology

      Volume: 41 Issue: 6 Pages: e663-e673

    • DOI

      10.1097/mao.0000000000002604

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Systematic quantification of the anion transport function of pendrin (SLC26A4) and its disease-associated variants2020

    • Author(s)
      Wasano K, Takahashi S, Rosenberg SK, Kojima T, Mutai H, Matsunaga T, Ogawa K, Homma K
    • Journal Title

      Hum Mut

      Volume: 41 Issue: 1 Pages: 316-331

    • DOI

      10.1002/humu.23930

    • Related Report
      2020 Annual Research Report 2019 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] A clinical and genetic study of 16 Japanese families with Waardenburg syndrome.2019

    • Author(s)
      Minami SB, Nara K, Mutai H, Morimoto N, Sakamoto H, Takiguchi T, Kaga K, Matsunaga T.
    • Journal Title

      Gene

      Volume: 704 Pages: 86-90

    • DOI

      10.1016/j.gene.2019.04.023

    • Related Report
      2019 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Gene expression dataset for whole cochlea of Macaca fascicularis2018

    • Author(s)
      Hideki Mutai, Fuyuki Miya, Hiroaki Shibata, Yasuhiro Yasutomi, Tatsuhiko Tsunoda, Tatsuo Matsunaga
    • Journal Title

      Scientific Reports

      Volume: 8 Issue: 1 Pages: 15554-15554

    • DOI

      10.1038/s41598-018-33985-9

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Deterioration in Distortion Product Otoacoustic Emissions in Auditory Neuropathy Patients With Distinct Clinical and Genetic Backgrounds.2018

    • Author(s)
      Kyoko Kitao; Hideki Mutai; Kazunori Namba; Noriko Morimoto; Atsuko Nakano; Yukiko Arimoto; Tomoko Sugiuchi; Sawako Masuda; Yasuhide Okamoto; Noriko Morita; Hirokazu Sakamoto; Tomoko Shintani; Satoshi Fukuda; Kimitaka Kaga; Tatsuo Matsunaga
    • Journal Title

      Ear and Hearing

      Volume: Ahead of Print Issue: 1 Pages: 0196-0202

    • DOI

      10.1097/aud.0000000000000586

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] A case report of reversible generalized seizures in a patient with Waardenburg syndrome associated with a novel nonsense mutation in the penultimate exon of SOX102018

    • Author(s)
      Noriomi Suzuki, Hideki Mutai, Fuyuki Miya, Tatsuhiko Tsunoda, Hiroshi Terashima, Noriko Morimoto, and Tatsuo Matsunaga
    • Journal Title

      BMC Pediatrics

      Volume: 18 Issue: 1 Pages: 171-171

    • DOI

      10.1186/s12887-018-1139-2

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] IMSindel: An accurate intermediate-size indel detection tool incorporating de novo assembly and gapped global-local alignment with split read analysis2018

    • Author(s)
      Shigemizu Daichi、Miya Fuyuki、Akiyama Shintaro、Okuda Shujiro、Boroevich Keith A、Fujimoto Akihiro、Nakagawa Hidewaki、Ozaki Kouichi、Niida Shumpei、Kanemura Yonehiro、Okamoto Nobuhiko、Saitoh Shinji、Kato Mitsuhiro、Yamasaki Mami、Matsunaga Tatsuo、Mutai Hideki、Kosaki Kenjiro、Tsunoda Tatsuhiko
    • Journal Title

      Scientific Reports

      Volume: 8 Issue: 1 Pages: 5608-5608

    • DOI

      10.1038/s41598-018-23978-z

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Presentation] 難聴原因遺伝子候補SLC12A2モデル動物の作成2020

    • Author(s)
      務台英樹、和佐野浩一郎、松永達雄
    • Organizer
      第30回日本耳科学会
    • Related Report
      2020 Annual Research Report
  • [Presentation] BOR症候群の臨床遺伝学的検討:臨床症状と遺伝学的原因の関連性について2020

    • Author(s)
      貫野彩子、増田正次、務台英樹、守本倫子、仲野敦子、杉内智子、岡本康秀、増田佐和子、勝沼紗矢香、小川郁、松永達雄
    • Organizer
      第30回日本耳科学会
    • Related Report
      2020 Annual Research Report
  • [Presentation] 視覚聴覚二重障害の医療向上への取り組み~難病プラットフォームによる全国多施設レジストリ~2020

    • Author(s)
      松永達雄、和佐野浩一郎、務台英樹、南修司郎、加我君孝
    • Organizer
      第30回日本耳科学会
    • Related Report
      2020 Annual Research Report
  • [Presentation] Alport症候群9家系におけるサブタイプ別聴覚および聴力経過の検討2020

    • Author(s)
      松﨑佐栄子、松永達雄、務台英樹、奈良清光、井上沙聡、細谷誠、藤岡正人、小川郁
    • Organizer
      第30回日本耳科学会
    • Related Report
      2020 Annual Research Report
  • [Presentation] Phenotypic presentation of DFNA11 at diverse stages of development and aging2020

    • Author(s)
      Tatsuo Matsunaga, Nobuko Yamamoto, Hideki Mutai, Kazunori Namba, Fumiyuki Goto, Kaoru Ogawa
    • Organizer
      第65回日本人類遺伝学会
    • Related Report
      2020 Annual Research Report
  • [Presentation] Clinical and molecular characterization of a Japanese patient with auditory neuropathy spectrum disorder associated with m.7471dupC heteroplasmy2020

    • Author(s)
      Shujiro Minami, Satomi Inoue, Kiyomitsu Nara, Hideki Mutai, Tatsuo Matsunaga
    • Organizer
      第65回日本人類遺伝学会
    • Related Report
      2020 Annual Research Report
  • [Presentation] Investigating the effects of exonic and intronic variants of NF2 on pre-mRNA splicing2020

    • Author(s)
      Masaru Noguchi , Masato Fujioka, Naoki Oishi, Hideki Mutai, Kiyomitsu Nara, Tatsuo Matsunaga, Kaoru Ogawa, Koichiro Wasano
    • Organizer
      Association for Research in Otolaryngology 43rd Mid Winter Meetingg
    • Related Report
      2019 Research-status Report
    • Int'l Joint Research
  • [Presentation] Elucidation of Genetic Background and Phenotypic Features in Patients with Hereditary Hearing Loss to Improve Diagnosis and Care2020

    • Author(s)
      Tatsuo Matsunaga, Hideki Mutai, Kiyomitsu Nara , Koichiro Wasano, Shujiro Minami, Kimitaka Kaga
    • Organizer
      Association for Research in Otolaryngology 43rd Mid Winter Meeting
    • Related Report
      2019 Research-status Report
    • Int'l Joint Research
  • [Presentation] Investigating the effects of exonic single nucleotide variants of SLC26A4 on pre-mRNA splicing2020

    • Author(s)
      Koichiro Wasano, Takashi Kojima, Satoe Takahashi, Hideki Mutai, Tatsuo Matsunaga, Kazuaki Homma
    • Organizer
      Association for Research in Otolaryngology 43rd Mid Winter Meeting
    • Related Report
      2019 Research-status Report
    • Int'l Joint Research
  • [Presentation] 霊長類蝸牛における高発現遺伝子群の探索2019

    • Author(s)
      務台英樹、松永達雄
    • Organizer
      第29回日本耳科学会
    • Related Report
      2019 Research-status Report
  • [Presentation] 国際研究チームによる164難聴遺伝子・疾患の組み合わせに対する臨床的妥当性の評価2019

    • Author(s)
      松永達雄、奈良清光、務台英樹、細谷誠、小川郁、加我君孝
    • Organizer
      第29回日本耳科学会
    • Related Report
      2019 Research-status Report
  • [Presentation] 極めて希少な遺伝子の病原性バリアントが原因として疑われた難聴の1家系2019

    • Author(s)
      橋本陽介、奈良清光、和佐野浩一郎、南修司郎、務台英樹、松永達雄
    • Organizer
      第29回日本耳科学会
    • Related Report
      2019 Research-status Report
  • [Presentation] NLRP3遺伝子に原因variantを同定したクリオピリン関連周期熱症候群症例の長期聴力経過の検討2019

    • Author(s)
      川崎泰士、和佐野浩一郎、松永達雄、務台英樹、奈良清光、平賀良彦
    • Organizer
      第64回日本聴覚医学会総会
    • Related Report
      2019 Research-status Report
  • [Presentation] 病的意義不明GJB2遺伝子バリアントの解釈への国際共同研究による挑戦と成2019

    • Author(s)
      松永達雄、奈良清光、務台英樹、井上沙聡、山本修子、和佐野浩一郎、南修司郎、加我君孝
    • Organizer
      第64回日本聴覚医学会総会
    • Related Report
      2019 Research-status Report
  • [Presentation] Multiple defects observed in postnatal Cbx2cterm/cterm mice2019

    • Author(s)
      Yuko Katoh-Fukui, Hideki Mutai, Maki Fukami
    • Organizer
      第42回日本分子生物学年会
    • Related Report
      2019 Research-status Report
    • Int'l Joint Research
  • [Presentation] Identification of SLC12A2 as a candidate of deafness gene in human2019

    • Author(s)
      Hideki Mutai, Koichiro Wasano, Yukihide Momozawa, Yoichiro Kamatani, Fuyuki Miya, Sawako Masuda, Noriko Morimoto, Kiyomitsu Nara, Satoe Takahashi, Tatsuhiko Tsunoda, Kazuaki Homma, Mitsuaki Kubo, Tatsuo Matsunaga
    • Organizer
      42nd Annual Midwinter Meeting, Association for Research in Otolaryngology
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research
  • [Presentation] Exome解析により同定された新規難聴原因候補SLC12A2変異とその機能解析2018

    • Author(s)
      務台英樹、和佐野浩一郎、奈良清光、松永達雄
    • Organizer
      第28回日本耳科学会
    • Related Report
      2018 Research-status Report
  • [Presentation] Whole Exome Sequencingにより同定された新規難聴原因候補SLC12A2とその変異2018

    • Author(s)
      務台英樹、和佐野浩一郎、桃沢幸秀、鎌谷洋一郎、宮冬樹、奈良清光、角田達彦、本間和明、久保充明、松永達雄
    • Organizer
      第63回日本人類遺伝学会
    • Related Report
      2018 Research-status Report
  • [Presentation] 3家系より同定された新規難聴原因候補SLC12A2と変異の機能解析2018

    • Author(s)
      務台英樹、和佐野浩一郎、桃沢幸秀、鎌谷洋一郎、宮冬樹、奈良清光、高橋里枝、角田達彦、本間和明、久保充明、松永達雄
    • Organizer
      第41回日本分子生物学会
    • Related Report
      2018 Research-status Report
  • [Presentation] Multiple defects observed in postnatal Cbx2cterm/cterm mice2018

    • Author(s)
      Yuko Katoh-Fukui, Hideki Mutai and Maki Fukami
    • Organizer
      2nd INFRAFRONTIER / IMPC Stakeholder Meeting
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research
  • [Remarks] 先天性難聴の新たな原因遺伝子を発見-新生児の難聴の原因診断、早期医療へ-

    • URL

      https://kyodonewsprwire.jp/release/202002267270

    • Related Report
      2020 Annual Research Report 2019 Research-status Report
  • [Remarks] DEAFNESS, AUTOSOMAL DOMINANT 78; DFNA78

    • URL

      https://omim.org/entry/619081#3

    • Related Report
      2020 Annual Research Report
  • [Remarks] 成果情報 先天性難聴の新たな原因遺伝子を発見

    • URL

      https://www.amed.go.jp/news/seika/kenkyu/20200629.html

    • Related Report
      2020 Annual Research Report
  • [Remarks] 先天性難聴の新たな原因遺伝子を発見-新生児の難聴の原因診断、早期医療へ-

    • URL

      https://research-er.jp/articles/view/88239

    • Related Report
      2020 Annual Research Report
  • [Remarks] 先天性難聴の新たな原因遺伝子を発見

    • URL

      https://research-er.jp/articles/view/88239

    • Related Report
      2019 Research-status Report

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Published: 2018-04-23   Modified: 2022-01-27  

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