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Development of periodontal disease biomarkers by ubiquitome analysis

Research Project

Project/Area Number 18K09593
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Review Section Basic Section 57030:Conservative dentistry-related
Research InstitutionNihon University (2020-2023)
Chiba University (2018-2019)

Principal Investigator

TSUCHIDA Sachio  日本大学, 医学部, 助手 (90410422)

Co-Investigator(Kenkyū-buntansha) 佐藤 守  千葉大学, 医学部附属病院, 特任准教授 (20401002)
西村 基  千葉大学, 医学部附属病院, 講師 (80400969)
Project Period (FY) 2018-04-01 – 2024-03-31
Project Status Completed (Fiscal Year 2023)
Budget Amount *help
¥4,290,000 (Direct Cost: ¥3,300,000、Indirect Cost: ¥990,000)
Fiscal Year 2020: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2019: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2018: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Keywords歯周疾患 / プロテオミクス / ユビキトーム / 質量分析 / ユビキトーム解析 / ユビキチン化 / 質量分析計 / GCF / HGFs / 歯学 / 歯周病学
Outline of Final Research Achievements

Many types of post-translational modifications of proteins are known as a means of adding diversity to their functions. Phosphorylation, glycosylation, acetylation, and methylation are well-known examples, but recently the importance of addition of low molecular weight proteins such as ubiquitination is becoming increasingly recognized. Abnormalities in proteolytic mechanisms are known to lead to various diseases, and among them, comprehensive analysis of ubiquitinated proteins is attracting attention as a target in the search for disease markers, including cancer. Focusing on ubiquitination, a typical post-translational modification that can occur in various diseases, we investigated the application of ubiquitination in periodontal diseases for early diagnosis and prediction of recurrence of periodontal diseases.

Academic Significance and Societal Importance of the Research Achievements

第一の特色は同時に侵襲性歯周炎、慢性歯周炎などの歯周疾患のタイプや、歯周疾患が全身に与える影響を検査することになるため、より正確で全身の健康に寄与する歯周治療を確立するための基盤となる点である。更に、ユビキトーム解析を行い、GCF とHGFs を用いた診断への活路をさらに切り拓く点である。第二の特色は、近年目まぐるしく進歩した質量分析解析技術を用いて歯周疾患に伴う翻訳後修飾レベルの変化を利用して、プロテオミクスとユビキチン化プロテオミクスを融合した歯周疾患マーカー探索を行う点である。本研究成果は歯周疾患マーカーの探索、さらには歯周疾患の早期診断、再発予測に大きく貢献できる。

Report

(7 results)
  • 2023 Annual Research Report   Final Research Report ( PDF )
  • 2022 Research-status Report
  • 2021 Research-status Report
  • 2020 Research-status Report
  • 2019 Research-status Report
  • 2018 Research-status Report
  • Research Products

    (24 results)

All 2023 2021 2020 2019 2018

All Journal Article (17 results) (of which Int'l Joint Research: 13 results,  Peer Reviewed: 14 results,  Open Access: 10 results) Presentation (6 results) (of which Invited: 5 results) Book (1 results)

  • [Journal Article] Periodontal Tissue Regeneration Therapy Using Stem Cells2023

    • Author(s)
      Tsuchida Sachio、Nakayama Tomohiro
    • Journal Title

      Stem Cell Reviews and Reports

      Volume: 19 Issue: 3 Pages: 825-826

    • DOI

      10.1007/s12015-022-10494-x

    • Related Report
      2023 Annual Research Report 2022 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Recent Clinical Treatment and Basic Research on the Alveolar Bone2023

    • Author(s)
      Tsuchida Sachio、Nakayama Tomohiro
    • Journal Title

      Biomedicines

      Volume: 11 Issue: 3 Pages: 843-843

    • DOI

      10.3390/biomedicines11030843

    • Related Report
      2023 Annual Research Report 2022 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Evaluation of a novel sample preparation method for identifying Aspergillus fumigatus using matrix-assisted laser desorption/ionization time-of-flight mass spectrometry: Combining Yatalase and silica beads treatment2023

    • Author(s)
      Tsuchida Sachio、Yamashita Koji、Murata Syota、Miyabe Akiko、Satoh Mamoru、Matsushita Kazuyuki、Nakayama Tomohiro、Nomura Fumio、Umemura Hiroshi
    • Journal Title

      Journal of Microbiological Methods

      Volume: 207 Pages: 106706-106706

    • DOI

      10.1016/j.mimet.2023.106706

    • Related Report
      2023 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Ubiquitination and Deubiquitination in Oral Disease2021

    • Author(s)
      Tsuchida Sachio、Nakayama Tomohiro
    • Journal Title

      International Journal of Molecular Sciences

      Volume: 22 Issue: 11 Pages: 5488-5488

    • DOI

      10.3390/ijms22115488

    • Related Report
      2021 Research-status Report
  • [Journal Article] Proteomic analysis of human immunodeficiency virus and periodontitis2020

    • Author(s)
      Tsuchida Sachio、Nakayama Tomohiro
    • Journal Title

      Expert Review of Proteomics

      Volume: 17 Issue: 11-12 Pages: 793-795

    • DOI

      10.1080/14789450.2020.1879648

    • Related Report
      2020 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Current Status of Matrix-Assisted Laser Desorption/Ionization?Time-of-Flight Mass Spectrometry (MALDI-TOF MS) in Clinical Diagnostic Microbiology2020

    • Author(s)
      Tsuchida Sachio、Umemura Hiroshi、Nakayama Tomohiro
    • Journal Title

      Molecules

      Volume: 25 Issue: 20 Pages: 4775-4775

    • DOI

      10.3390/molecules25204775

    • Related Report
      2020 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Proteome Analysis of Molecular Events in Oral Pathogenesis and Virus: A Review with a Particular Focus on Periodontitis2020

    • Author(s)
      Tsuchida Sachio
    • Journal Title

      International Journal of Molecular Sciences

      Volume: 21 Issue: 15 Pages: 5184-5184

    • DOI

      10.3390/ijms21155184

    • Related Report
      2020 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Mass spectrometry-based microbiological testing for blood stream infection2020

    • Author(s)
      Nomura Fumio、Tsuchida Sachio、Murata Syota、Satoh Mamoru、Matsushita Kazuyuki
    • Journal Title

      Clinical Proteomics

      Volume: 17 Issue: 1 Pages: 14-14

    • DOI

      10.1186/s12014-020-09278-7

    • Related Report
      2020 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] An in-house centrifugation and membrane filtration technique for identifying microorganisms from positive blood culture bottles with high identification rates using matrix-assisted laser desorption ionization?Time-of-flight mass spectrometry: A preliminary report2020

    • Author(s)
      Tsuchida Sachio、Murata Syota、Miyabe Akiko、Satoh Mamoru、Takiwaki Masaki、Matsushita Kazuyuki、Nomura Fumio
    • Journal Title

      Journal of Infection and Chemotherapy

      Volume: 26 Issue: 3 Pages: 266-271

    • DOI

      10.1016/j.jiac.2019.09.017

    • Related Report
      2020 Research-status Report 2019 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] 【究める!臨床検査 遺伝子解析技術の革新がもたらす臨床検査とは】病原体核酸検査 臨床微生物検査における質量分析技術 質量分析技術による細菌同定を中心に2020

    • Author(s)
      土田 祥央, 村田 正太, 野村 文夫
    • Journal Title

      臨床病理レビュー

      Volume: 164 Pages: 76-83

    • Related Report
      2020 Research-status Report
  • [Journal Article] 歯周病とプロテオミクス2020

    • Author(s)
      土田祥央
    • Journal Title

      炎症と免疫

      Volume: 28 Pages: 21-25

    • Related Report
      2019 Research-status Report
  • [Journal Article] A simple method for sequencing the whole human mitochondrial genome directly from samples and its application to genetic testing2019

    • Author(s)
      Yao Yue、Nishimura Motoi、Murayama Kei、Kuranobu Naomi、Tojo Satomi、Beppu Minako、Ishige Takayuki、Itoga Sakae、Tsuchida Sachio、Mori Masato、Takayanagi Masaki、Yokoyama Masataka、Yamagata Kazuyuki、Kishita Yoshihito、Okazaki Yasushi、Nomura Fumio、Matsushita Kazuyuki、Tanaka Tomoaki
    • Journal Title

      Scientific Reports

      Volume: 9 Issue: 1 Pages: 17411-17421

    • DOI

      10.1038/s41598-019-53449-y

    • Related Report
      2019 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Current Status of Proteomic Technologies for Discovering and Identifying Gingival Crevicular Fluid Biomarkers for Periodontal Disease.2018

    • Author(s)
      Tsuchida S, Satoh M, Takiwaki M, Nomura F
    • Journal Title

      Int J Mol Sci

      Volume: 20 Issue: 1 Pages: 86-86

    • DOI

      10.3390/ijms20010086

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Application of the biocopolymer preparation system, rapid BACproII kit, for mass-spectrometry-based bacterial identification from positive blood culture bottles by the MALDI Biotyper system.2018

    • Author(s)
      Tsuchida S, Murata S, Miyabe A, Satoh M, Takiwaki M, Ashizawa K, Terada T, Ito D, Matsushita K, Nomura F.
    • Journal Title

      J Microbiol Methods.

      Volume: 152 Pages: 86-91

    • DOI

      10.1016/j.mimet.2018.07.017

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] An improved in-house lysis-filtration protocol for bacterial identification from positive blood culture bottles with high identification rates by MALDI-TOF MS.2018

    • Author(s)
      Tsuchida S, Murata S, Miyabe A, Satoh M, Takiwaki M, Matsushita K, Nomura F
    • Journal Title

      Journal of microbiological methods

      Volume: 18 Pages: 1684-1688

    • DOI

      10.1016/j.mimet.2018.03.014

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Capsular serotyping of Haemophilus influenzae by using matrix-associated laser desorption ionization-time of flight mass?spectrometry.2018

    • Author(s)
      Takeuchi N, Segawa S, Ishiwada N, Ohkusu M, Tsuchida S, Satoh M, Matsushita K, Nomura F
    • Journal Title

      Journal of infection and chemotherapy : official journal of the Japan Society of Chemotherapy

      Volume: 18 Issue: 7 Pages: 300062-66

    • DOI

      10.1016/j.jiac.2018.02.007

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Assessment by Matrix-Assisted Laser Desorption/Ionization Time-of-Flight Mass Spectrometry of the Effects of Preanalytical Variables on Serum Peptidome Profiles Following Long-Term Sample Storage.2018

    • Author(s)
      Tsuchida S, Satoh M, Umemura H, Sogawa K, Takiwaki M, Ishige T, Miyabayashi Y, Iwasawa Y, Kobayashi S, Beppu M, Nishimura M, Kodera Y, Matsushita K, Nomura F
    • Journal Title

      Proteomics. Clinical applications

      Volume: 15 Issue: 3 Pages: 47-53

    • DOI

      10.1002/prca.201700047

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Presentation] 病院検査部で活躍する質量分析技術-現状と展望- 質量分析技術による血液培養陽性ボトルからの微生物直接同定の現状と課題2020

    • Author(s)
      土田祥央, 村田 正太, 野村 文夫, 中山 智祥
    • Organizer
      日本医療検査科学会
    • Related Report
      2020 Research-status Report
    • Invited
  • [Presentation] 塩化アンモニウム溶血剤とメンブレンフィルターを用いたMALDI-TOF MSによる血液培養ボトルからの細菌迅速同定前処理法の開発2019

    • Author(s)
      土田 祥央, 村田 正太, 宮部 安規子, 佐藤 守, 滝脇 正貴, 松下 一之, 野村 文夫
    • Organizer
      第44回日本医用マススペクトル学会年会
    • Related Report
      2019 Research-status Report
  • [Presentation] MALDI-TOF MSによる血液培養陽性ボトルからの細菌直接同定のための前処理法の現状と課題2018

    • Author(s)
      土田祥央, 村田正太,松下一之, 野村文夫
    • Organizer
      第65回日本臨床検査医学会学術集会
    • Related Report
      2018 Research-status Report
    • Invited
  • [Presentation] 血清と血漿のプロテオミクス・ペプチドミクス,保存された血清の質量分析による評価2018

    • Author(s)
      土田祥央
    • Organizer
      第43回日本医用マススペクトル学会年会
    • Related Report
      2018 Research-status Report
    • Invited
  • [Presentation] 保存検体・保存菌株が導く臨床応用・保存された臨床検体(血清)の質量分析による劣化の評価2018

    • Author(s)
      土田祥央
    • Organizer
      第68回日本電気泳動学会シンポジウム
    • Related Report
      2018 Research-status Report
    • Invited
  • [Presentation] 保存された臨床検体(血清)の質量分析による劣化の評価.2018

    • Author(s)
      土田祥央
    • Organizer
      日本質量分析学会・日本プロテオーム学会 2018年合同大会
    • Related Report
      2018 Research-status Report
    • Invited
  • [Book] 医療系学生のための医用質量分析学テキスト 感染症起因微生物同定2019

    • Author(s)
      村田正太, 土田祥央, 佐藤 守, 野村文夫
    • Total Pages
      128
    • Publisher
      診断と治療社
    • ISBN
      9784787824189
    • Related Report
      2019 Research-status Report

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Published: 2018-04-23   Modified: 2025-01-30  

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