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Investigation of effectiveness of whole genome amplification prior to short tandem repeat analysis for degraded DNA

Research Project

Project/Area Number 18K10136
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Review Section Basic Section 58040:Forensics medicine-related
Research InstitutionTokyo Women's Medical University

Principal Investigator

Machida Mitsuyo  東京女子医科大学, 医学部, 助教 (60468692)

Project Period (FY) 2018-04-01 – 2021-03-31
Project Status Completed (Fiscal Year 2020)
Budget Amount *help
¥4,030,000 (Direct Cost: ¥3,100,000、Indirect Cost: ¥930,000)
Fiscal Year 2020: ¥910,000 (Direct Cost: ¥700,000、Indirect Cost: ¥210,000)
Fiscal Year 2019: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2018: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Keywords全ゲノム増幅法 / DNA損傷 / STR解析 / 全ゲノ増幅法 / STR / degraded DNA / WGA
Outline of Final Research Achievements

Short tandem repeat (STR) analysis is prone to failure as DNA is frequently damaged by various environmental factors; hence, increasing the number of starting templates may constitute a feasible approach to improve STR profiling success. One approach to increase the number of DNA templates is whole genome amplification (WGA), however, few studies have demonstrated that WGA can be used on degraded samples in forensics. Therefore, we utilized modified improved primer extension preamplification (mIPEP) prior to STR analysis. For the 5 ng DNA sample on paper, at a DI < 0.2, the number of detectable STRs was greater with mIPEP than without it. The 0.05 ng DNA sample deposited on paper, at when DI was 0.7 or higher, and the 0.05 ng DNA sample deposited on glass, at when DI was 0.4 or higher, exhibited higher numbers of detectable STRs when prepared using mIPEP. These findings suggest that performing mIPEP in accordance with sample DNA condition may lead to increased success of STR analysis.

Academic Significance and Societal Importance of the Research Achievements

事件現場等で採取された試料は様々な環境要因によりDNAが変性し、量も限られているため、通常のSTR解析による個人識別が困難になる場合が多い。法医学では量・質共に良い状態ではない試料に対し、個人識別の判定率を高める方法について検討することは重要な課題である。本研究ではSTR解析前に全ゲノム増幅法の1つであるmIPEP処理を行うことで、豊富なDNAの場合は高度な変性試料において、また微量なDNAの場合は軽度の変性試料であれば、STR解析成功率を高めることが明らかになった。つまり、今まで解析困難だった試料がmIPEP処理により解析可能となり、犯罪捜査への貢献が期待される。

Report

(4 results)
  • 2020 Annual Research Report   Final Research Report ( PDF )
  • 2019 Research-status Report
  • 2018 Research-status Report
  • Research Products

    (12 results)

All 2020 2019 2018

All Journal Article (5 results) (of which Peer Reviewed: 5 results,  Open Access: 1 results) Presentation (7 results) (of which Int'l Joint Research: 2 results)

  • [Journal Article] 変性試料に対するmIPEP法の有効性の検討2020

    • Author(s)
      町田光世、木林和彦
    • Journal Title

      DNA多型

      Volume: 28(1) Pages: 51-52

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Effectiveness of whole genome amplification prior to short tandem repeat analysis for degraded DNA2020

    • Author(s)
      Machida M, Kibayashi K
    • Journal Title

      Forensic Science International: Genetics

      Volume: 49 Pages: 102373-102373

    • DOI

      10.1016/j.fsigen.2020.102373

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 変性試料に対する全ゲノム増幅法の検討2019

    • Author(s)
      町田 光世、木林 和彦
    • Journal Title

      DNA多型

      Volume: 27 Pages: 100-101

    • Related Report
      2019 Research-status Report
    • Peer Reviewed
  • [Journal Article] Investigation of the efficiency of whole genome amplification prior to short tandem repeat analysis using degraded DNA2019

    • Author(s)
      Mitsuyo Machida, Kazuhiko Kibayashi
    • Journal Title

      Forensic Science International: Genetics Supplement Series

      Volume: 7 Issue: 1 Pages: 587-588

    • DOI

      10.1016/j.fsigss.2019.10.100

    • Related Report
      2019 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] 微量DNAを用いた全ゲノム増幅法の条件検討2018

    • Author(s)
      町田 光世、多木 崇、木林 和彦
    • Journal Title

      DNA多型

      Volume: 26 Pages: 86-88

    • Related Report
      2018 Research-status Report
    • Peer Reviewed
  • [Presentation] 変性試料に対する全ゲノム増幅(mIPEP法)の有効性2020

    • Author(s)
      町田光世、木林和彦
    • Organizer
      第104次日本法医学会学術全国集会
    • Related Report
      2020 Annual Research Report
  • [Presentation] 変性DNAを用いた全ゲノム増幅法(mIPEP法)の検討2019

    • Author(s)
      町田光世、木林和彦
    • Organizer
      第103次日本法医学会学術全国集会
    • Related Report
      2019 Research-status Report
  • [Presentation] Investigation of the efficiency of whole genome amplification prior to short tandem repeat analysis using degraded DNA2019

    • Author(s)
      Mitsuyo Machida, Kazuhiko Kibayashi
    • Organizer
      The 28th Congress of the International Society for Forensic Genetics
    • Related Report
      2019 Research-status Report
    • Int'l Joint Research
  • [Presentation] 変性試料に対するmIPEP法の有効性の検討2019

    • Author(s)
      町田光世、木林和彦
    • Organizer
      第28回日本DNA多型学会
    • Related Report
      2019 Research-status Report
  • [Presentation] Evaluation of the Efficacy of Whole Genome Amplification for Degraded DNA2019

    • Author(s)
      Mitsuyo Machida, Kazuhiko Kibayashi
    • Organizer
      71st American Academy of Forensic Science
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research
  • [Presentation] 変性DNAに対する全ゲノム増幅法の有効性の検討2018

    • Author(s)
      町田 光世、木林 和彦
    • Organizer
      第87回日本法医学会学術関東地方集会
    • Related Report
      2018 Research-status Report
  • [Presentation] 変性試料に対する全ゲノム増幅法の検討2018

    • Author(s)
      町田 光世、木林 和彦
    • Organizer
      第27回日本DNA多型学会
    • Related Report
      2018 Research-status Report

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Published: 2018-04-23   Modified: 2022-01-27  

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