• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to previous page

Evaluation of protein crystal defects in real and reciprocal space by in situ observation

Research Project

Project/Area Number 18K14134
Research Category

Grant-in-Aid for Early-Career Scientists

Allocation TypeMulti-year Fund
Review Section Basic Section 30010:Crystal engineering-related
Research InstitutionHokkaido University

Principal Investigator

Yamazaki Tomoya  北海道大学, 低温科学研究所, 特別研究員(PD) (50735032)

Project Period (FY) 2018-04-01 – 2021-03-31
Project Status Discontinued (Fiscal Year 2020)
Budget Amount *help
¥4,160,000 (Direct Cost: ¥3,200,000、Indirect Cost: ¥960,000)
Fiscal Year 2020: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2019: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2018: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Keywordsタンパク質結晶 / 透過型電子顕微鏡 / 溶液セル / 結晶欠陥 / “その場”観察 / 溶液成長
Outline of Final Research Achievements

The dynamic behavior of defects in protein crystals, which degrade the quality of protein crystals, has been successfully visualized by transmission electron microscopy. The voids and the block structure were observed in protein crystals of micron size or smaller and their formation, movement, and disappearance were also observed. Analysis of these behaviors revealed that there is no time dependence on number density of defects in each crystal. This suggests that the defects originated before the crystals reached micron size, i.e., before, or immediately after nucleation.

Academic Significance and Societal Importance of the Research Achievements

結晶の質を悪くする欠陥の動きの可視化に成功したことは、その欠陥が導入される原因を排除できることに繋がる。これは欠陥が導入される原理解明や高品質な結晶を育成するための指針となる。また、タンパク質の機能を理解したり、創薬に応用したりするためにはタンパク質分子の構造(形)を知る必要があり、これは調べたいタンパク質分子の高品質な結晶を作製して行う。より高品質な結晶を用いることで詳細なタンパク質分子の構造を知ることができる。

Report

(3 results)
  • 2020 Final Research Report ( PDF )
  • 2019 Annual Research Report
  • 2018 Research-status Report
  • Research Products

    (12 results)

All 2020 2019 2018

All Journal Article (4 results) (of which Int'l Joint Research: 2 results,  Peer Reviewed: 3 results,  Open Access: 1 results) Presentation (8 results) (of which Int'l Joint Research: 2 results)

  • [Journal Article] High mobility of lattice molecules and defects during the early stage of protein crystallization2020

    • Author(s)
      Yamazaki Tomoya、Van Driessche Alexander E. S.、Kimura Yuki
    • Journal Title

      Soft Matter

      Volume: 16 Issue: 8 Pages: 1955-1960

    • DOI

      10.1039/c9sm02382h

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Electron-Beam-Induced Nucleation in an Antisolvent2019

    • Author(s)
      Yamazaki Tomoya、Kimura Yuki
    • Journal Title

      Microscopy and Microanalysis

      Volume: 25 Issue: S2 Pages: 1480-1481

    • DOI

      10.1017/s1431927619008134

    • Related Report
      2019 Annual Research Report
  • [Journal Article] Sounding-rocket microgravity experiments on alumina dust2018

    • Author(s)
      Ishizuka Shinnosuke、Kimura Yuki、Sakon Itsuki、Kimura Hiroshi、Yamazaki Tomoya、Takeuchi Shinsuke、Inatomi Yuko
    • Journal Title

      Nature Communications

      Volume: 9 Issue: 1 Pages: 3820-3820

    • DOI

      10.1038/s41467-018-06359-y

    • NAID

      120006531995

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Immiscibility of Nucleating Aluminum Oxide Nanoparticles in Vapor2018

    • Author(s)
      Ishizuka Shinnosuke、Kimura Yuki、Kawano Jun、Escribano Rafael、Yamazaki Tomoya、Hama Tetsuya、Sato Rikako
    • Journal Title

      The Journal of Physical Chemistry C

      Volume: 122 Issue: 43 Pages: 25092-25101

    • DOI

      10.1021/acs.jpcc.8b08355

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Presentation] Investigation of liquid cell transmission electron microscopy combined with antisolvent crystallization2019

    • Author(s)
      山﨑智也、木村勇気
    • Organizer
      日本地球惑星科学連合2019年大会
    • Related Report
      2019 Annual Research Report
  • [Presentation] 溶液透過型電子顕微鏡を用いた貧溶媒からの結晶化その場観察法の検討2019

    • Author(s)
      山﨑智也、木村勇気
    • Organizer
      日本顕微鏡学会第75回学術講演会
    • Related Report
      2019 Annual Research Report
  • [Presentation] In situ observation of crystallization of a salt using an antisolvent by transmission electron microscopy2019

    • Author(s)
      Tomoya Yamazaki, Yuki Kimura
    • Organizer
      International Conference on Crystal Growth and Epitaxy (ICCGE-19)
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Electron-beam-induced nucleation in an antisolvent2019

    • Author(s)
      Tomoya Yamazaki, Yuki Kimura
    • Organizer
      Microscopy & Microanalysis 2019 (M&M 2019)
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 透過型電子顕微鏡による溶液からの結晶化“その場”観察法の検討2019

    • Author(s)
      山﨑智也
    • Organizer
      結晶表面・界面での相転移ダイナミクスに関するその場観察および理論
    • Related Report
      2018 Research-status Report
  • [Presentation] In-situ observation of dynamics of defects in a protein crystal2018

    • Author(s)
      Tomoya Yamazaki, Yuki Kimura
    • Organizer
      日本地球惑星科学連合2018年大会
    • Related Report
      2018 Research-status Report
  • [Presentation] リゾチームタンパク質の結晶化に関わる2種類の非結晶粒子2018

    • Author(s)
      山﨑智也、木村勇気、清水洋、藤田咲子、藤原正裕、大野智子
    • Organizer
      分子・物質合成プラットフォーム 平成30年度 シンポジウム
    • Related Report
      2018 Research-status Report
  • [Presentation] タンパク質結晶中の欠陥の挙動2018

    • Author(s)
      山﨑智也,A. E. S. Van Driessche,木村勇気
    • Organizer
      第47回結晶成長国内会議
    • Related Report
      2018 Research-status Report

URL: 

Published: 2018-04-23   Modified: 2022-01-27  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi