Comprehensive search for the G-quadruplex structure in mRNA
| Project/Area Number |
18K14338
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| Research Category |
Grant-in-Aid for Early-Career Scientists
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| Allocation Type | Multi-year Fund |
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| Review Section |
Basic Section 37010:Bio-related chemistry
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| Research Institution | Kumamoto University |
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Principal Investigator |
KATSUDA YOUSUKE 熊本大学, 大学院先端科学研究部(工), 助教 (50632460)
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| Project Period (FY) |
2018-04-01 – 2020-03-31
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| Project Status |
Completed (Fiscal Year 2019)
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| Budget Amount *help |
¥4,160,000 (Direct Cost: ¥3,200,000、Indirect Cost: ¥960,000)
Fiscal Year 2019: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Fiscal Year 2018: ¥2,210,000 (Direct Cost: ¥1,700,000、Indirect Cost: ¥510,000)
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| Keywords | RNA G-quadurplex / translation / RNA G-quadruplex / cancer |
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| Outline of Final Research Achievements |
Guanine-rich RNA sequences can form thermodynamically-stable four-stranded RNA structures known as RNA G-quadruplex (RGq). It has been long understood that RGq structrues are linked to essential biological processes, yet the physiological significance of RGq structrues in cells still remains unclear. Here, we demonstrate a method that permits the discovery of RGq structrues which affect protein translation in mammalian cells. The method is an integration of antibody array technology and a small-molecule RGB-1, which selectively stabilizes RGq structrues. By applying this technique to 84-human-cancer-related genes, we found NECTIN-4 and CAPG as two genes carrying G-quadruplex structures on the 5’UTR of their mRNA. Further investigations revealed that the RGq structrues of CAPG exhibits a structural polymorphism. This infers that the polymorphic G-quadruplex structure in the 5’UTR of the mRNA would promote environment-responsive regulation of gene expression.
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| Academic Significance and Societal Importance of the Research Achievements |
バイオインフォマティクス技術の向上によりmRNAの構造が正確に予想すること可能になってきている。しかし近年、核酸高次構造は環境依存的に変化することが明らかになってきており、細胞内環境を具体的に数値化することが困難であることから、バイオインフォマティクスのみで細胞内の核酸高次構造を正確に予想することは困難であると考えられる。
そこで申請者はRNA G-quadaruplexに選択的に結合する化合物RGB-1を用いて細胞内RGqの網羅的な探索を可能とする技術を開発した。同手法を用いて、今まで知られていなかった遺伝子からRGqを同定することに成功した。
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Report
(3 results)
Research Products
(28 results)
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[Journal Article] A novel cholinesterase assay for the evaluation of neurotoxin poisoning based on the electron-transfer promotion effect of thiocholine on an Au electrode2019
Author(s)
Hiroshi Shimada, Yuki Kiyozumi, Yuki Koga, Yoko Ogata, Yousuke Katsuda, Yusuke Kitamura, Masaaki Iwatsuki, Katsuhiko Nishiyama, Hideo Baba, and Toshihiro Ihara
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Journal Title
Sens. Actuators B Chem.,
Volume: 298
Pages: 126893-126893
DOI
Related Report
Peer Reviewed
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[Presentation] Fabrication of anti-EpCAM aptamer-modified gold substrate for capturing cancer cells2019
Author(s)
Ayase Tashima, Yuki Kudo, Yusuke Kitamura, Yuta Nakashima, Keiichiro Yasuda, Masaaki Iwatsuki, Yousuke Katsuda, Kenshiro Nakatake, Hideo Baba, Yoshitaka Nakanishi, Toshihiro Ihara
Organizer
The 14th International Student Conference on Advanced Science and Technology
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