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Visualization of uncultured microorganisms by using a novel imaging method and challenge of single cell genomics.

Research Project

Project/Area Number 18K14514
Research Category

Grant-in-Aid for Early-Career Scientists

Allocation TypeMulti-year Fund
Review Section Basic Section 40030:Aquatic bioproduction science-related
Research InstitutionMatsue National College of Technology

Principal Investigator

Yamaguchi Tsuyoshi  松江工業高等専門学校, 環境・建設工学科, 准教授 (30759832)

Project Period (FY) 2018-04-01 – 2022-03-31
Project Status Completed (Fiscal Year 2021)
Budget Amount *help
¥4,160,000 (Direct Cost: ¥3,200,000、Indirect Cost: ¥960,000)
Fiscal Year 2020: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2019: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2018: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Keywordsclick chemistry / 高感度FISH法 / 機能遺伝子 / 視覚的検出技術 / HCR-FISH / Click chemistry / comammox / 視覚的検出 / 環境微生物
Outline of Final Research Achievements

In this study, we focused on single cell genomics, which can reveal the ecology of uncultured microorganism, and we developed a novel visualization technique for sorting of uncultured microorganism. Hybridization chain reaction-fluorescence in situ hybridization (HCR-FISH) was combined for detection of functional genes in microorganisms. When this method was applied to E.coli encoding partial functional genes, signal was obtained from E.coli by investigated reaction time and concertation of reagent of click chemistry. Moreover, some signal was obtained from microorganisms in bioreactor.

Academic Significance and Societal Importance of the Research Achievements

本研究では, 未培養微生物を視覚的に検出する手法開発を行った. この手法開発を用いて視覚的検出によって, 微生物回収が容易になり, 新たな微生物資源の発掘や微生物生態の解明につながると考えている. 社会的意義としても, 新たな微生物資源を発掘することで, 新規の水処理装置や環境改善に利用することができることから貢献度は高いと考えている.

Report

(5 results)
  • 2021 Annual Research Report   Final Research Report ( PDF )
  • 2020 Research-status Report
  • 2019 Research-status Report
  • 2018 Research-status Report
  • Research Products

    (11 results)

All 2022 2021 2020 2019 2018

All Presentation (9 results) (of which Int'l Joint Research: 1 results) Book (2 results)

  • [Presentation] Click chemistryを用いたHCR-FISH法の適用可能性評価2022

    • Author(s)
      永妻志問, 山口剛士
    • Organizer
      第56回日本水環境学会年会
    • Related Report
      2021 Annual Research Report
  • [Presentation] 高感度FISH法におけるclick chemistryの適用可能性評価2022

    • Author(s)
      永妻志問, 山口剛士
    • Organizer
      第34回日本微生物生態学会
    • Related Report
      2021 Annual Research Report
  • [Presentation] HCR-FISH法を用いた機能遺伝子の視覚的検出2021

    • Author(s)
      永妻志問, 大野裕之, 山口 剛士
    • Organizer
      第55回日本水環境学会年会
    • Related Report
      2020 Research-status Report
  • [Presentation] HCR-FISH法を用いた微生物回収技術の最適化2021

    • Author(s)
      藤原澪, 山口 剛士
    • Organizer
      第55回日本水環境学会年会
    • Related Report
      2020 Research-status Report
  • [Presentation] アジド-アルキンの環化付加反応を用いた微生物の視覚的検出技術の最適化2021

    • Author(s)
      山崎 綾乃, 木村 圭佑, 武邊 勝道, 山口 剛士
    • Organizer
      第55回日本水環境学会年会
    • Related Report
      2020 Research-status Report
  • [Presentation] アジド・アルキンの環化付加反応を用いた大腸菌の視覚的検出2021

    • Author(s)
      山崎 綾乃, 木村 圭佑, 武邊 勝道, 山口 剛士
    • Organizer
      第72回土木学会中国支部研究発表会
    • Related Report
      2020 Research-status Report
  • [Presentation] アジド-アルキンの環化付加反応を用いた高感度FISH法の開発2020

    • Author(s)
      山崎綾乃, 木村圭佑, Bernhard Fuchs, Rudolf Amann, Jorg Wulf, 武邊勝道, 山口剛士
    • Organizer
      第54回日本水環境学会年会
    • Related Report
      2019 Research-status Report
  • [Presentation] Click chemistryを用いた機能遺伝子の視覚的検出技術の開発2019

    • Author(s)
      大野裕之, 山口剛士, 武邊勝道
    • Organizer
      第53回日本水環境学会年会
    • Related Report
      2018 Research-status Report
  • [Presentation] Microbial community structure and diversity of animal husbandry effluent in intermittent aeration reactor2018

    • Author(s)
      Yuki Mizuta, Tsuyoshi Yamaguchi and Kohdai Watari
    • Organizer
      STI-Gigaku 2018
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research
  • [Book] 月刊 アグリバイオ 1月号2021

    • Author(s)
      山口剛士, 川上周司
    • Total Pages
      4
    • Publisher
      北隆館
    • Related Report
      2020 Research-status Report
  • [Book] 月刊 細胞 11月号2020

    • Author(s)
      山口剛士, 川上周司
    • Total Pages
      3
    • Publisher
      北隆館
    • Related Report
      2020 Research-status Report

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Published: 2018-04-23   Modified: 2023-01-30  

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