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CPEB-mediated post-transcriptional regulation of gene expression

Research Project

Project/Area Number 18K14630
Research Category

Grant-in-Aid for Early-Career Scientists

Allocation TypeMulti-year Fund
Review Section Basic Section 43010:Molecular biology-related
Research InstitutionNagoya City University

Principal Investigator

Ogami Koichi  名古屋市立大学, 医薬学総合研究院(薬学), 助教 (70796523)

Project Period (FY) 2018-04-01 – 2020-03-31
Project Status Completed (Fiscal Year 2019)
Budget Amount *help
¥4,160,000 (Direct Cost: ¥3,200,000、Indirect Cost: ¥960,000)
Fiscal Year 2019: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Fiscal Year 2018: ¥2,210,000 (Direct Cost: ¥1,700,000、Indirect Cost: ¥510,000)
KeywordsRNA結合タンパク質 / mRNA分解 / 翻訳 / ポリA鎖伸長 / CPEB / 遺伝子発現
Outline of Final Research Achievements

The RNA-binding protein CPEB regulates gene expression both positively and negatively. Currently, c-myc mRNA is the only known target that is promptly degraded by a mechanism involving CPEB. In this study, we identified an RNA code comprising of the consesnsus and non-consesnsus CPE sequences that guides CPEB to degrade c-myc mRNA. We also worked on CPEB's role during DNA damage responses, and found that CPEB and its binding poly(A) polymerase PAPD7 are essential for the increase of RNR2 protein after doxorubicin or UV treatment of U2OS cells. While many of the constitutively expressed mRNAs are deadenylated in response to the DNA damages, poly(A) tails of RNR2 mRNA are elongated. Our results suggesting that CPEB-PAPD7 discriminates RNR2 mRNA from the others to indeuce translation during DNA damage response.

Academic Significance and Societal Importance of the Research Achievements

転写後における遺伝子の発現制御は、mRNAの量や翻訳量を決定する重要な過程である。CPEBは、mRNAの3'末端に付加されるポリA鎖の制御によってmRNAの運命を決定する。CPEBは標的遺伝子ごとにポリA鎖短縮化によるmRNA分解促進と伸長による翻訳活性化を使い分けていると考えられるが、CPEBが標的mRNAのどのような情報を読み取って制御の方向を決定しているかなど、CPEBによる遺伝子発現に関わる分子メカニズムには不明な点が多い。本研究は、CPEBによる多様なmRNA制御に、どのような仕組みが関わるのかを完全に理解するために重要な基盤的な知見を与えるものである。

Report

(3 results)
  • 2019 Annual Research Report   Final Research Report ( PDF )
  • 2018 Research-status Report
  • Research Products

    (15 results)

All 2020 2019 2018

All Journal Article (8 results) (of which Int'l Joint Research: 2 results,  Peer Reviewed: 8 results,  Open Access: 5 results) Presentation (7 results)

  • [Journal Article] The RNA-binding protein QKI-7 recruits the poly(A) polymerase GLD-2 for 3’ adenylation and selective stabilization of microRNA-122.2020

    • Author(s)
      Hojo, H., Yashiro1, Y., Noda1, Y., Ogami, K., Yamagishi, R., Okada, S., Hoshino, S. and Suzuki, T.
    • Journal Title

      J Biol Chem

      Volume: 295 Issue: 2 Pages: 390-402

    • DOI

      10.1074/jbc.ra119.011617

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] ABCE1 acts as a positive regulator of exogenous RNA decay.2020

    • Author(s)
      Nogimori, T., Ogami, K., Oishi, Y., Goda, R., Hosoda, N., Kitamura, Y., Kitade, Y., and Hoshino S.
    • Journal Title

      viruses

      Volume: 20 Issue: 2 Pages: 174-174

    • DOI

      10.3390/v12020174

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Efficient differentiation and purification of human induced pluripotent stem cell-derived endothelial progenitor cells and expansion with the use of inhibitors of ROCK, TGF-β, and GSK3β2020

    • Author(s)
      Aoki Hiromasa、Yamashita Misaki、Hashita Tadahiro、Ogami Koichi、Hoshino Shinichi、Iwao Takahiro、Matsunaga Tamihide
    • Journal Title

      Heliyon

      Volume: 6 Issue: 3 Pages: e03493-e03493

    • DOI

      10.1016/j.heliyon.2020.e03493

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Large expert-curated database for benchmarking document similarity in biomedical literature search2019

    • Author(s)
      Peter Brown, RELISH Consortium and Yaoqi Zhou
    • Journal Title

      Database (Oxford)

      Volume: 2019 Pages: 1-66

    • DOI

      10.1093/database/baz085

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] A novel method for stabilizing microRNA mimics2019

    • Author(s)
      Nogimori Takuto、Furutachi Kazuya、Ogami Koichi、Hosoda Nao、Hoshino Shin-ichi
    • Journal Title

      Biochemical and Biophysical Research Communications

      Volume: 511 Issue: 2 Pages: 422-426

    • DOI

      10.1016/j.bbrc.2019.02.075

    • Related Report
      2018 Research-status Report
    • Peer Reviewed
  • [Journal Article] NRDE-2, the human homolog of fission yeast Nrl1, prevents DNA damage accumulation in human cells2018

    • Author(s)
      Richard Patricia、Ogami Koichi、Chen Yaqiong、Feng Shuang、Moresco James J.、Yates John R.、Manley James L.
    • Journal Title

      RNA Biology

      Volume: 15 Issue: 7 Pages: 868-876

    • DOI

      10.1080/15476286.2018.1467180

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] MicroRNP-mediated translational activation of nonadenylated mRNAs in a mammalian cell-free system2018

    • Author(s)
      Wakiyama Motoaki、Ogami Koichi、Iwaoka Ryo、Aoki Kazuma、Hoshino Shin-ichi
    • Journal Title

      Genes to Cells

      Volume: 23 Issue: 5 Pages: 332-344

    • DOI

      10.1111/gtc.12580

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] RNA Surveillance by the Nuclear RNA Exosome: Mechanisms and Significance2018

    • Author(s)
      Ogami Koichi、Chen Yaqiong、Manley James
    • Journal Title

      Non-Coding RNA

      Volume: 4 Issue: 1 Pages: 8-8

    • DOI

      10.3390/ncrna4010008

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Open Access
  • [Presentation] RNA結合タンパク質Larp1はTOP mRNAのポリA鎖伸長を介し遺伝子発現を制御する2019

    • Author(s)
      大石結香、尾上耕一、星野真一
    • Organizer
      日本病院薬剤師会東海ブロック・日本薬学会東海支部合同学術大会2019
    • Related Report
      2019 Annual Research Report
  • [Presentation] LARP1はTOP mRNAのポリA鎖伸長を介してアミノ酸飢餓回復時の翻訳活性化を可能にする2019

    • Author(s)
      尾上耕一、大石結香、坂元健大郎、野木森拓人、星野真一
    • Organizer
      第21回日本RNA学会年会
    • Related Report
      2019 Annual Research Report
  • [Presentation] RNA 結合タンパク質 LARP4 はミトコンドリア構成因子の mRNA を標的とする2019

    • Author(s)
      中島朋香、尾上耕一、志水良亮、星野真一
    • Organizer
      第65回薬学会東海支部総会・大会
    • Related Report
      2019 Annual Research Report
  • [Presentation] インターロイキンエンハンサー結合因子3(ILF3)は標的mRNAのポリA鎖を制御する2019

    • Author(s)
      山口奈津美、尾上耕一、細田直、星野真一
    • Organizer
      第83回日本生化学会中部支部例会・シンポジウム
    • Related Report
      2019 Annual Research Report
  • [Presentation] miRNA 医薬の新規安定化技術の開発2019

    • Author(s)
      野木森拓人、古舘和也、尾上耕一、細田直、星野真一
    • Organizer
      第21回日本RNA学会年会
    • Related Report
      2019 Annual Research Report
  • [Presentation] アミノ酸飢餓シグナルに呼応したLarp1によるmRNA代謝調節2018

    • Author(s)
      坂元健大郎、尾上耕一、細田直、山岸良多、星野真一
    • Organizer
      日本病院薬剤師会東海ブロック 日本薬学会東海支部 合同学術大会2018
    • Related Report
      2018 Research-status Report
  • [Presentation] 新規RNA結合タンパク質Larp4Bによる標的mRNA代謝調節2018

    • Author(s)
      野間崇秀、尾上耕一、細田直、山岸良多、星野真一
    • Organizer
      日本病院薬剤師会東海ブロック 日本薬学会東海支部 合同学術大会2018
    • Related Report
      2018 Research-status Report

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Published: 2018-04-23   Modified: 2021-02-19  

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