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High resolution X-ray crystallographic structural study of blue sensitive cone pigment

Research Project

Project/Area Number 18K14662
Research Category

Grant-in-Aid for Early-Career Scientists

Allocation TypeMulti-year Fund
Review Section Basic Section 43040:Biophysics-related
Research InstitutionNagoya Institute of Technology

Principal Investigator

Katayama Kota  名古屋工業大学, 工学(系)研究科(研究院), 助教 (00799182)

Project Period (FY) 2018-04-01 – 2020-03-31
Project Status Completed (Fiscal Year 2019)
Budget Amount *help
¥4,160,000 (Direct Cost: ¥3,200,000、Indirect Cost: ¥960,000)
Fiscal Year 2019: ¥2,080,000 (Direct Cost: ¥1,600,000、Indirect Cost: ¥480,000)
Fiscal Year 2018: ¥2,080,000 (Direct Cost: ¥1,600,000、Indirect Cost: ¥480,000)
Keywords色覚視物質 / X線結晶構造解析 / 赤外分光解析 / 人工合成レチナール / 波長制御 / 水分子 / レチナール / 昆虫細胞 / X線結晶構造解析 / FTIR分光法
Outline of Final Research Achievements

Humans have two kinds of vision: twilight vision mediated by rhodopsin (Rh) and color vision achieved by three cone pigments. A common chromophore, 11-cis-retinal, is used to distinguish different colors in vision. While X-ray structure of Rh was determined, structural studies of cone pigments lag far behind those of Rh.
Here, I attempted to determine the 3D structure of cone pigments. To develop light-stable cone pigments, I introduced analogue retinal that is restricted cis-trans isomerization. Successfully obtained blue pigment regenerated with analogue retinal exhibited high thermal stability. Furthermore, by using a novel crystallization procedure, blue pigment analogue resulted in an appropriate phase separation in the crystal drops, which gave the possibility for discovering the suitable condition to obtain crystals. I also found the unique photochromic property of blue pigment upon illumination by using spectroscopic studies, which indicated the specific photoreaction.

Academic Significance and Societal Importance of the Research Achievements

色認識は生物学者、物理学者から哲学者まで多くの研究者の関心を集める一方、色覚視物質の発現試料に対する構造生物学的解析は過去に全く行われていなかった。本研究では、構造解析のための結晶取得に向けた実験条件の確立に差し迫っており、今後の結晶化・構造決定が大いに期待できる。そして光耐性を有する青視物質アナログの構造基盤に立脚した色盲患者の治療に向けた新薬開発への研究発展が期待される。さらに、分光法による青視物質の中間体の同定およびBL中間体の赤外分光差スペクトル測定の成功は、吸収される青色光情報がどのようにしてシグナル伝達されるのか、青視物質における光情報伝達機構を理解するための構造情報を与えた。

Report

(3 results)
  • 2019 Annual Research Report   Final Research Report ( PDF )
  • 2018 Research-status Report
  • Research Products

    (21 results)

All 2020 2019 2018 Other

All Int'l Joint Research (2 results) Journal Article (3 results) (of which Int'l Joint Research: 1 results,  Peer Reviewed: 3 results) Presentation (14 results) (of which Int'l Joint Research: 7 results,  Invited: 10 results) Book (2 results)

  • [Int'l Joint Research] Case Western Reserve University(米国)

    • Related Report
      2019 Annual Research Report
  • [Int'l Joint Research] Case Western Reserve University(米国)

    • Related Report
      2018 Research-status Report
  • [Journal Article] Specificity of the chromophore-binding site in human cone opsins2019

    • Author(s)
      Kota Katayama, Sahil Gulati, Joseph T. Ortega, Nathan S. Alexander, Wenyu Sun, Marina M. Shenouda, Krzysztof Palczewski, Beata Jastrzebska
    • Journal Title

      The Journal of Biological Chemistry

      Volume: 294 Issue: 15 Pages: 6082-6093

    • DOI

      10.1074/jbc.ra119.007587

    • Related Report
      2019 Annual Research Report 2018 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Role of Gln114 in spectral tuning of a long-wavelength sensitive visual pigment2019

    • Author(s)
      K. Katayama, S. Nakamura, T. Sasaki, H. Imai, H. Kandori*
    • Journal Title

      Biochemistry

      Volume: 58 Issue: 26 Pages: 2944-2952

    • DOI

      10.1021/acs.biochem.9b00340

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] FTIR Study of S180A Mutant of Primate Red-sensitive Pigment2019

    • Author(s)
      Katayama Kota、Imai Hiroo、Kandori Hideki
    • Journal Title

      Chemistry Letters

      Volume: 48 Issue: 9 Pages: 1142-1144

    • DOI

      10.1246/cl.190458

    • NAID

      130007703039

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Presentation] GPCRリガンド認識・シグナリングの「正確性」かつ「自由性」を振動分光法により読み解く2020

    • Author(s)
      片山耕大
    • Organizer
      第42回XFEL構造生物ミーティング
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] FTIR study of visual and non-visual G protein-coupled receptors2020

    • Author(s)
      K. Katayama, K. Suzuki, R. Suno, H. Kandori
    • Organizer
      日本化学会 第100春季年会 (2020)
    • Related Report
      2019 Annual Research Report
  • [Presentation] Structural basis for elucidating spectral tuning mechanism of cone pigments2019

    • Author(s)
      K. Katayama
    • Organizer
      International Symposium on "Optobiotechnology"
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] FTIR study of light-sensitive and non light-sensitive G protein-coupled receptors2019

    • Author(s)
      K. Katayama
    • Organizer
      Scientific Seminar in Freie Universitat Berlin
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Structural study of thermo-stabilized mutation in cone visual opsin2019

    • Author(s)
      K. Katayama, H. Kandori
    • Organizer
      17th International Congress on Photobiology 18th Congress of the European Society for Photobiology
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Role of Gln114 in spectral tuning of a long-wavelength sensitive visual pigment2019

    • Author(s)
      K. Katayama, S. Nakamura, T. Sasaki, H. Imai, H. Kandori
    • Organizer
      The 57th Annual Meeting of The Biophysical Society of Japan
    • Related Report
      2019 Annual Research Report
  • [Presentation] 構造基盤に立脚した色認識機構および色覚情報伝達機構の解明2019

    • Author(s)
      片山耕大
    • Organizer
      「量子技術を適用した生命科学基盤の創出」第5回領域会議
    • Related Report
      2019 Annual Research Report
  • [Presentation] Structural basis for elucidating spectral tuning mechanism of cone pigments2019

    • Author(s)
      Kota Katayama
    • Organizer
      International Symposium on "Optobiotechnology
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] Structural basis for elucidating spectral tuning mechanism of cone pigments2018

    • Author(s)
      Kota Katayama
    • Organizer
      5th Global Nanotechnology Congress and Expo
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] Molecular mechanism of spectral tuning in color vision2018

    • Author(s)
      Kota Katayama
    • Organizer
      Scientific seminar in University of Valencia
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] Molecular mechanism of spectral tuning in color vision2018

    • Author(s)
      Kota Katayama
    • Organizer
      The 9th International Conference on Bioscience and Biotechnology (ICBB)
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] 色覚センサータンパク質の色認識とシグナル伝達の分子機構2018

    • Author(s)
      片山 耕大
    • Organizer
      岡山大学 生体物理化学研究室 セミナー
    • Related Report
      2018 Research-status Report
    • Invited
  • [Presentation] ATR-FTIR study of ligand-binding to G protein-coupled receptors2018

    • Author(s)
      Kota Katayama
    • Organizer
      The 18th Annual Meeting of the Protein Science Society of Japan
    • Related Report
      2018 Research-status Report
    • Invited
  • [Presentation] 赤外線とX線を融合させたGタンパク質共役型受容体の構造・機能相関研究2018

    • Author(s)
      片山 耕大
    • Organizer
      第10回化学公開セミナー
    • Related Report
      2018 Research-status Report
    • Invited
  • [Book] Vibrational Spectroscopy in Protein Research: From Purified Proteins to Aggregates and Assemblies (Y. Ozaki, M. Baranska, I. Lednev, B. R. Wood, eds)2019

    • Author(s)
      H. Kandori, K. Katayama
    • Publisher
      Elsevier
    • Related Report
      2019 Annual Research Report
  • [Book] Protein Reserach by VIbrational Spectroscopy2019

    • Author(s)
      Hideki Kandori, Kota Katayama
    • Publisher
      Elsevier
    • Related Report
      2018 Research-status Report

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Published: 2018-04-23   Modified: 2021-02-19  

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