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Testing the recapitulation tendency in vertebrate embryogenesis by analyzing developmental patterns of gene regulatory activities

Research Project

Project/Area Number 18K14711
Research Category

Grant-in-Aid for Early-Career Scientists

Allocation TypeMulti-year Fund
Review Section Basic Section 44020:Developmental biology-related
Research InstitutionInstitute of Physical and Chemical Research

Principal Investigator

Masahiro Uesaka  国立研究開発法人理化学研究所, 生命機能科学研究センター, 研究員 (20756499)

Project Period (FY) 2018-04-01 – 2021-03-31
Project Status Completed (Fiscal Year 2020)
Budget Amount *help
¥4,160,000 (Direct Cost: ¥3,200,000、Indirect Cost: ¥960,000)
Fiscal Year 2020: ¥390,000 (Direct Cost: ¥300,000、Indirect Cost: ¥90,000)
Fiscal Year 2019: ¥910,000 (Direct Cost: ¥700,000、Indirect Cost: ¥210,000)
Fiscal Year 2018: ¥2,860,000 (Direct Cost: ¥2,200,000、Indirect Cost: ¥660,000)
Keywords進化発生学 / 進化 / 発生 / 反復説 / 比較エピゲノム / エピジェネティクス / EvoDevo / 発生学 / バイオインフォマティクス
Outline of Final Research Achievements

Animal development generally proceeds from a single-celled zygote to a complex multicellular organism. This has led biologists to propose parallel relationships between development and evolution. One of the famous hypotheses is recapitulation theory. This assumes embryogenesis of an animal parallels its evolutionary history, sequentially developing from more ancestral features to more derived ones. However, no molecular studies have not quantitatively supported such recapitulation in vertebrate embryogenesis so far. In this study, we tested the recapitulation from the perspective of gene regulation. By examining developmental changes in active gene regulatory regions and estimating their evolutionary ages, we found that regulatory regions tend to become sequentially activated in an order that parallels their evolutionary ages in three vertebrates. This suggests a recapitulative pattern in gene regulatory activity during embryogenesis.

Academic Significance and Societal Importance of the Research Achievements

本研究で、発生過程における遺伝子制御領域の活性動態が反復パターンを示したことは、 発生過程は完全に自由自在に変化しながら進化してきたわけではないことを示唆している。これは、何らかの進化的制約が発生過程の進化的変更を徐々に後期段階に偏らせてきた可能性をも提起し、発生がもたらす進化的制約の重要性を、現在の進化学の理解において強調するものとなりうる。また、本研究で得られたゲノムワイドなクロマチン状態の発生系列データは、進化研究はもちろん、ゲノム情報からどのように表現型が生まれるかを理解する上でも重要な基盤的情報となる。

Report

(4 results)
  • 2020 Annual Research Report   Final Research Report ( PDF )
  • 2019 Research-status Report
  • 2018 Research-status Report
  • Research Products

    (10 results)

All 2021 2020 2019 2018

All Journal Article (5 results) (of which Int'l Joint Research: 1 results,  Peer Reviewed: 4 results,  Open Access: 5 results) Presentation (5 results) (of which Int'l Joint Research: 2 results,  Invited: 4 results)

  • [Journal Article] The developmental hourglass model and recapitulation: An attempt to integrate the two models.2021

    • Author(s)
      Uesaka, M., Kuratani, S., and Irie, N.
    • Journal Title

      J Exp Zool B Mol Dev Evol.

      Volume: in press Issue: 1-2 Pages: 1-11

    • DOI

      10.1002/jez.b.23027

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] How can recapitulation be reconciled with modern concepts of evolution?2021

    • Author(s)
      Kuratani S, Uesaka M, Irie N.
    • Journal Title

      J Exp Zool B Mol Dev Evol.

      Volume: in press Issue: 1-2 Pages: 1-8

    • DOI

      10.1002/jez.b.23020

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Genomic insights of body plan transitions from bilateral to pentameric symmetry in Echinoderms2020

    • Author(s)
      Yongxin Li, et al. (35名中 35番目 Naoki Irie*)
    • Journal Title

      Communications Biology

      Volume: 3:371 Issue: 1 Pages: 371-371

    • DOI

      10.1038/s42003-020-1091-1

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Recapitulation-like developmental transitions of chromatin accessibility in vertebrates2019

    • Author(s)
      Uesaka Masahiro、Kuratani Shigeru、Takeda Hiroyuki、Irie Naoki
    • Journal Title

      Zoological Letters

      Volume: 5 Issue: 1 Pages: 33-33

    • DOI

      10.1186/s40851-019-0148-9

    • Related Report
      2019 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Evolutionary transition in accessible chromatin landscapes during vertebrate embryogenesis2018

    • Author(s)
      Uesaka Masahiro、Kuratani Shigeru、Takeda Hiroyuki、Irie Naoki
    • Journal Title

      bioRxiv

      Volume: - Pages: 1-20

    • DOI

      10.1101/481309

    • Related Report
      2018 Research-status Report
    • Open Access
  • [Presentation] Testing the recapitulative pattern in vertebrate embryogenesis from the perspective of gene regulation2020

    • Author(s)
      Masahiro Uesaka
    • Organizer
      The 53rd JSDB/APDBN Meeting
    • Related Report
      2020 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Testing the recapitulative pattern in vertebrate embryogenesis from the perspective of gene regulation2020

    • Author(s)
      Masahiro Uesaka
    • Organizer
      JSDB Online Trial Meeting 2020
    • Related Report
      2020 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 脊椎動物の発生過程は進化を反復するのか?2019

    • Author(s)
      上坂 将弘、倉谷 滋、武田 洋幸、入江 直樹
    • Organizer
      日本進化学会第21回大会
    • Related Report
      2019 Research-status Report
    • Invited
  • [Presentation] 脊椎動物の胚発生における反復説の検証2019

    • Author(s)
      上坂 将弘、倉谷 滋、武田 洋幸、入江 直樹
    • Organizer
      日本動物学会第90回大阪大会
    • Related Report
      2019 Research-status Report
    • Invited
  • [Presentation] 脊椎動物発生のオープンクロマチン動態に見られた系統進化の反復的パターン2019

    • Author(s)
      上坂 将弘、倉谷 滋、武田 洋幸、入江 直樹
    • Organizer
      第42回 日本分子生物学会年会
    • Related Report
      2019 Research-status Report

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Published: 2018-04-23   Modified: 2022-01-27  

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