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Maintenance of intestinal homeostasis by long non-coding RNA

Research Project

Project/Area Number 18K15115
Research Category

Grant-in-Aid for Early-Career Scientists

Allocation TypeMulti-year Fund
Review Section Basic Section 49030:Experimental pathology-related
Research InstitutionTokyo Medical and Dental University

Principal Investigator

Chiba Tomoki  東京医科歯科大学, 大学院医歯学総合研究科, 助教 (00645830)

Project Period (FY) 2018-04-01 – 2021-03-31
Project Status Completed (Fiscal Year 2020)
Budget Amount *help
¥4,160,000 (Direct Cost: ¥3,200,000、Indirect Cost: ¥960,000)
Fiscal Year 2019: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Fiscal Year 2018: ¥2,210,000 (Direct Cost: ¥1,700,000、Indirect Cost: ¥510,000)
Keywords長鎖非コードRNA / 炎症性サイトカイン / 炎症性腸疾患 / 転写制御
Outline of Final Research Achievements

Recent advantages of transcriptome analyses revealed that non-coding RNAs, especially long non-coding (lnc) RNAs, are transcribed across genome and involved in various aspects of biological processes. I have identified a novel lncRNA that positively regulates inflammatory cytokine expression and named it LASC. LASC is required for the expression of inflammatory cytokines such as IL-6 and GM-CSF. Recruitment of transcription factor NF-kB was strongly reduced in LASC deficient cells, suggesting that LASC could regulate inflammatory cytokine expression at transcriptional level. LASC knockout mice are resistant to sepsis, but susceptible to inflammatory bowel disease. These results suggest that LASC is important for maintaining intestinal homeostasis through the regulation of inflammatory cytokine expression in mucosal cells.

Academic Significance and Societal Importance of the Research Achievements

ヒトやマウスにおいて、タンパク質をコードしない非コードRNA(non-coding RNA)は20,000種類以上あると推定されている。その多くは機能を持たないRNAであると考えられているが、一部のRNAは生命機能に重要な役割を果たしている。新たに同定したLASCは炎症性サイトカインの発現に重要な長鎖非コードRNAであり、個体における炎症性疾患に重要な非コードRNAであることが示された。

Report

(4 results)
  • 2020 Annual Research Report   Final Research Report ( PDF )
  • 2019 Research-status Report
  • 2018 Research-status Report
  • Research Products

    (16 results)

All 2021 2020 2019 2018

All Journal Article (10 results) (of which Int'l Joint Research: 8 results,  Peer Reviewed: 10 results,  Open Access: 6 results) Presentation (6 results)

  • [Journal Article] Identification of chemical compounds regulating PD‐L1 by introducing HiBiT‐tagged cells2021

    • Author(s)
      Uchida Yutaro、Matsushima Takahide、Kurimoto Ryota、Chiba Tomoki、Inutani Yuki、Asahara Hiroshi
    • Journal Title

      FEBS Letters

      Volume: 595 Issue: 5 Pages: 563-576

    • DOI

      10.1002/1873-3468.14032

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] The tRNA pseudouridine synthase TruB1 regulates the maturation of let‐7 miRNA2020

    • Author(s)
      Kurimoto Ryota、Chiba Tomoki、Ito Yoshiaki、Matsushima Takahide、Yano Yuki、Miyata Kohei、Yashiro Yuka、Suzuki Tsutomu、Tomita Kozo、Asahara Hiroshi
    • Journal Title

      The EMBO Journal

      Volume: 39 Issue: 20

    • DOI

      10.15252/embj.2020104708

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] In vitro Neo-Genesis of Tendon/Ligament-Like Tissue by Combination of Mohawk and a Three-Dimensional Cyclic Mechanical Stretch Culture System2020

    • Author(s)
      Kataoka Kensuke、Kurimoto Ryota、Tsutsumi Hiroki、Chiba Tomoki、Kato Tomomi、Shishido Kana、Kato Mariko、Ito Yoshiaki、Cho Yuichiro、Hoshi Osamu、Mimata Ayako、Sakamaki Yuriko、Nakamichi Ryo、Lotz Martin K.、Naruse Keiji、Asahara Hiroshi
    • Journal Title

      Frontiers in Cell and Developmental Biology

      Volume: 8 Pages: 307-307

    • DOI

      10.3389/fcell.2020.00307

    • NAID

      120006869584

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Analysis of the Mouse Y Chromosome by Single-Molecule Sequencing With Y Chromosome Enrichment2020

    • Author(s)
      Yano Yuki、Chiba Tomoki、Asahara Hiroshi
    • Journal Title

      Frontiers in Genetics

      Volume: 11 Pages: 406-406

    • DOI

      10.3389/fgene.2020.00406

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed
  • [Journal Article] MicroRNA Expression Profiling, Target Identification, and Validation in2020

    • Author(s)
      Chiba Tomoki、Kurimoto Ryota、Matsushima Takahide、Ito Yoshiaki、Nakamichi Ryo、Lotz Martin、Asahara Hiroshi
    • Journal Title

      Methods in Molecular Biology

      Volume: 2245 Pages: 151-166

    • DOI

      10.1007/978-1-0716-1119-7_11

    • ISBN
      9781071611180, 9781071611197
    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Forced isoform switching of Neat1_1 to Neat1_2 leads to the loss of Neat1_1 and the hyperformation of paraspeckles but does not affect the development and growth of mice2019

    • Author(s)
      Isobe Momo、Toya Hikaru、Mito Mari、Chiba Tomoki、Asahara Hiroshi、Hirose Tetsuro、Nakagawa Shinichi
    • Journal Title

      RNA

      Volume: 26 Issue: 3 Pages: 251-264

    • DOI

      10.1261/rna.072587.119

    • Related Report
      2019 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] The long noncoding RNA NEAT1_1 is seemingly dispensable for normal tissue homeostasis and cancer cell growth2019

    • Author(s)
      Adriaens Carmen、Rambow Florian、Bervoets Greet、Silla Toomas、Mito Mari、Chiba Tomoki、Asahara Hiroshi、Hirose Tetsuro、Nakagawa Shinichi、Jensen Torben Heick、Marine Jean-Christophe
    • Journal Title

      RNA

      Volume: 25 Issue: 12 Pages: 1681-1695

    • DOI

      10.1261/rna.071456.119

    • Related Report
      2019 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Post-transcriptional regulation of inflammation by RNA-binding proteins via cis-elements of mRNAs2019

    • Author(s)
      Uchida Yutaro、Chiba Tomoki、Kurimoto Ryota、Asahara Hiroshi
    • Journal Title

      The Journal of Biochemistry

      Volume: 166 Issue: 5 Pages: 375-382

    • DOI

      10.1093/jb/mvz067

    • NAID

      40022069517

    • Related Report
      2019 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Ablation of miR-146b in mice causes hematopoietic malignancy2018

    • Author(s)
      Mitsumura Takahiro、Ito Yoshiaki、Chiba Tomoki、Matsushima Takahide、Kurimoto Ryota、Tanaka Yoko、Kato Tomomi、Uchida Keisuke、Ito Takashi、Yamamoto Kouhei、Eishi Yoshinobu、Kitagawa Masanobu、Miyazaki Yasunari、Inase Naohiko、Asahara Hiroshi
    • Journal Title

      Blood Advances

      Volume: 2 Issue: 23 Pages: 3483-3491

    • DOI

      10.1182/bloodadvances.2018017954

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Combinatorial CRISPR/Cas9 Approach to Elucidate a Far-Upstream Enhancer Complex for Tissue-Specific Sox9 Expression2018

    • Author(s)
      Mochizuki Yusuke、Chiba Tomoki、Kataoka Kensuke、Yamashita Satoshi、Sato Tempei、Kato Tomomi、Takahashi Kenji、Miyamoto Takeshi、Kitazawa Masashi、Hatta Tomohisa、Natsume Tohru、Takai Shinro、Asahara Hiroshi
    • Journal Title

      Developmental Cell

      Volume: 46 Issue: 6 Pages: 794-806

    • DOI

      10.1016/j.devcel.2018.07.024

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Presentation] 鎖非コードRNAによる炎症性サイトカインの発現制御2019

    • Author(s)
      千葉 朋希、寺尾 梨沙、淺原 弘嗣
    • Organizer
      第5回日本骨免疫学会
    • Related Report
      2019 Research-status Report
  • [Presentation] Long non-coding RNAによる炎症性サイトカインの発現制御2019

    • Author(s)
      寺尾 梨沙、千葉 朋希、小林 和弘、淺原 弘嗣
    • Organizer
      第21回日本RNA学会年会
    • Related Report
      2019 Research-status Report
  • [Presentation] 長鎖非コードRNAによる炎症性サイトカインの発現制御2019

    • Author(s)
      千葉 朋希、寺尾 梨沙、浅原 弘嗣
    • Organizer
      第6回JCRベーシックリサーチカンファレンス
    • Related Report
      2019 Research-status Report
  • [Presentation] 長鎖非コードRNAによる炎症性サイトカインの発現制御2018

    • Author(s)
      千葉 朋希、淺原 弘嗣
    • Organizer
      第4回日本骨免疫学会
    • Related Report
      2018 Research-status Report
  • [Presentation] Long non-coding RNAによる炎症性サイトカインの発現制御2018

    • Author(s)
      寺尾 梨沙、千葉 朋希、淺原 弘嗣
    • Organizer
      第20回日本RNA学会年会
    • Related Report
      2018 Research-status Report
  • [Presentation] Escort1による炎症性サイトカインの転写後調節2018

    • Author(s)
      内田 雄太郎、千葉 朋希、矢野 雄暉、浅原 弘嗣
    • Organizer
      第20回日本RNA学会年会
    • Related Report
      2018 Research-status Report

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Published: 2018-04-23   Modified: 2022-01-27  

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