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Research aimed to overcome the intracableness of lung fibrosis by regulation of ageing-related long non-coding RNAs

Research Project

Project/Area Number 18K15948
Research Category

Grant-in-Aid for Early-Career Scientists

Allocation TypeMulti-year Fund
Review Section Basic Section 53030:Respiratory medicine-related
Research InstitutionNagoya University

Principal Investigator

Koji Sakamoto  名古屋大学, 医学部附属病院, 病院講師 (00635633)

Project Period (FY) 2018-04-01 – 2023-03-31
Project Status Completed (Fiscal Year 2022)
Budget Amount *help
¥4,160,000 (Direct Cost: ¥3,200,000、Indirect Cost: ¥960,000)
Fiscal Year 2020: ¥520,000 (Direct Cost: ¥400,000、Indirect Cost: ¥120,000)
Fiscal Year 2019: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2018: ¥2,080,000 (Direct Cost: ¥1,600,000、Indirect Cost: ¥480,000)
Keywords肺線維症 / エピゲノム / RNA / 細胞老化 / 老化 / lncRNA / ミトコンドリアDNA / RNA / リプログラミング / ノンコーディングRNA / エピジェネティクス / 非コードRNA
Outline of Final Research Achievements

While the importance of cellular senescence in the pathogenesis of idiopathic pulmonary fibrosis, an age-related intractable disease, has attracted much attention, the involvement of long non-coding RNAs (lncRNAs), a new epigenomic factor responsible for cellular fate determination including cellular senescence, remains unclear. We identified a number of lncRNAs that are specifically altered in idiopathic pulmonary fibrosis based on a large-scale comprehensive RNA expression analysis of human lung tissue. We subsequently extracted several lncRNAs that are also involved in cellular senescence. Among them, we focused on FENDRR, a lncRNA specifically expressed in mesenchymal cells, functions to regulate the cellular senescence phenotype of fibroblasts induced by stimuli such as TGF-β and oxidative stress, which is assumed to be mediated partly by the regulation of NADPH oxidase.

Academic Significance and Societal Importance of the Research Achievements

肺線維症の肺組織で発現変化する新規エピゲノム因子・長鎖ノンコーディングRNAが肺細胞において病態形成に関係した病的な細胞変化、特に細胞老化の表現型を制御していることが示唆された。本研究の更なる発展により難治の肺疾患において長鎖ノンコーディングRNAを用いた同疾患の新しい治療標的の開発やバイオマーカーの創出が期待される。

Report

(6 results)
  • 2022 Annual Research Report   Final Research Report ( PDF )
  • 2021 Research-status Report
  • 2020 Research-status Report
  • 2019 Research-status Report
  • 2018 Research-status Report
  • Research Products

    (30 results)

All 2022 2021 2020 2019 2018 Other

All Int'l Joint Research (3 results) Journal Article (15 results) (of which Int'l Joint Research: 5 results,  Peer Reviewed: 15 results,  Open Access: 8 results) Presentation (11 results) (of which Int'l Joint Research: 11 results) Remarks (1 results)

  • [Int'l Joint Research] Yale University(米国)

    • Related Report
      2020 Research-status Report
  • [Int'l Joint Research] Yale University(米国)

    • Related Report
      2019 Research-status Report
  • [Int'l Joint Research] Yale University(米国)

    • Related Report
      2018 Research-status Report
  • [Journal Article] Successful Treatment with High-dose Steroids for Acute Exacerbation of Idiopathic Pulmonary Fibrosis Triggered by COVID-192022

    • Author(s)
      Omote Norihito、Kanemitsu Yoshihiro、Inoue Takahiro、Yonezawa Toshiyuki、Ichihashi Takuji、Shindo Yuichiro、Sakamoto Koji、Ando Akira、Suzuki Atsushi、Niimi Akio、Ito Satoru、Imaizumi Kazuyoshi、Hashimoto Naozumi
    • Journal Title

      Internal Medicine

      Volume: 61 Issue: 2 Pages: 233-236

    • DOI

      10.2169/internalmedicine.8163-21

    • NAID

      130008141771

    • ISSN
      0918-2918, 1349-7235
    • Year and Date
      2022-01-15
    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] COVID-19-Triggered Acute Exacerbation of IPF, an Underdiagnosed Clinical Entity With Two-Peaked Respiratory Failure: A Case Report and Literature Review2022

    • Author(s)
      Goto Yosuke、Sakamoto Koji、Fukihara Jun、Suzuki Atsushi、Omote Norihito、Ando Akira、Shindo Yuichiro、Hashimoto Naozumi
    • Journal Title

      Frontiers in Medicine

      Volume: 9 Pages: 815924-815924

    • DOI

      10.3389/fmed.2022.815924

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Overexpression of bone morphogenetic protein receptor type 2 suppresses transforming growth factor β-induced profibrotic responses in lung fibroblasts2022

    • Author(s)
      Fukihara Jun、Maiolo Suzanne、Kovac Jessica、Sakamoto Koji、Wakahara Keiko、Hashimoto Naozumi、Reynolds Paul N.
    • Journal Title

      Experimental Lung Research

      Volume: 48 Issue: 1 Pages: 35-51

    • DOI

      10.1080/01902148.2021.2024301

    • Related Report
      2022 Annual Research Report 2021 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] A comprehensible machine learning tool to differentially diagnose idiopathic pulmonary fibrosis from other chronic interstitial lung diseases2022

    • Author(s)
      Furukawa T, Oyama S, Yokota H, Kondoh Y, Kataoka K, Johkoh T, Fukuoka J, Hashimoto N,Sakamoto K, Shiratori Y, Hasegawa Y
    • Journal Title

      Respirology

      Volume: 27 Issue: 9 Pages: 739-746

    • DOI

      10.1111/resp.14310

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed
  • [Journal Article] CINS: Cell Interaction Network inference from Single cell expression data2022

    • Author(s)
      Yuan Ye、Cosme Carlos、Adams Taylor Sterling、Schupp Jonas、Sakamoto Koji、Xylourgidis Nikos、Ruffalo Matthew、Li Jiachen、Kaminski Naftali、Bar-Joseph Ziv
    • Journal Title

      PLOS Computational Biology

      Volume: 18 Issue: 9 Pages: e1010468-e1010468

    • DOI

      10.1371/journal.pcbi.1010468

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] BMP3b Is a Novel Antifibrotic Molecule Regulated by Meflin in Lung Fibroblasts2022

    • Author(s)
      Suzuki Atsushi、Sakamoto Koji、Nakahara Yoshio、Enomoto Atsushi、Hino Jun、Ando Akira、Inoue Masahide、Shiraki Yukihiro、Omote Norihito、Kusaka Masahiro、Fukihara Jun、Hashimoto Naozumi
    • Journal Title

      American Journal of Respiratory Cell and Molecular Biology

      Volume: 67 Issue: 4 Pages: 446-458

    • DOI

      10.1165/rcmb.2021-0484oc

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Size and surface modification of silica nanoparticles affect the severity of lung toxicity by modulating endosomal ROS generation in macrophages2021

    • Author(s)
      Masahide Inoue, Koji Sakamoto, Atsushi Suzuki, Shinya Nakai, Akira Ando, Yukihiko Shiraki, Yoshio Nakahara, Mika Omura, Atsushi Enomoto, Ikuhiko Nakase, Makoto Sawada, Naozumi Hashimoto
    • Journal Title

      Particle and Fibre Toxicology

      Volume: 18 Issue: 1 Pages: 21-21

    • DOI

      10.1186/s12989-021-00415-0

    • Related Report
      2021 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Fibroblasts positive for meflin have anti-fibrotic properties in pulmonary fibrosis2021

    • Author(s)
      Nakahara Y, Hashimoto N, Sakamoto K, Enomoto A, Adams TS, Yokoi T, Omote N, Poli S, Ando A, Wakahara K, Suzuki A, Inoue M, Hara A, Mizutani Y, Imaizumi K, Kawabe T, Rosas IO, Takahashi M, Kaminski N, Hasegawa Y.
    • Journal Title

      European Respiratory Journal

      Volume: 58 Issue: 6 Pages: 2003397-2003397

    • DOI

      10.1183/13993003.03397-2020

    • Related Report
      2021 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Long noncoding RNA TINCR is a novel regulator of human bronchial epithelial cell differentiation state.2021

    • Author(s)
      Omote N, Sakamoto K, Li Q, Schupp JC, Adams T, Ahangari F, Chioccioli M, DeIuliis G, Hashimoto N, Hasegawa Y, Kaminski N.
    • Journal Title

      Physiol Rep.

      Volume: 9 Issue: 3

    • DOI

      10.14814/phy2.14727

    • Related Report
      2020 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Acute Exacerbation of Pleuroparenchymal Fibroelastosis Secondary to Allogenic Hematopoietic Stem Cell Transplantation2020

    • Author(s)
      Murakami Y, Sakamoto K, Okumura Y, Suzuki A, Mii S, Sato M, Yokoi T, Hashimoto N, Hasegawa Y.
    • Journal Title

      Internal Medicine

      Volume: 59 Issue: 21 Pages: 2737-2743

    • DOI

      10.2169/internalmedicine.4995-20

    • NAID

      130007934213

    • ISSN
      0918-2918, 1349-7235
    • Year and Date
      2020-11-01
    • Related Report
      2020 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Clinical burden of immune checkpoint inhibitor-induced pneumonitis2020

    • Author(s)
      Sakamoto Koji、Fukihara Jun、Morise Masahiro、Hashimoto Naozumi
    • Journal Title

      Respiratory Investigation

      Volume: 58 Issue: 5 Pages: 305-319

    • DOI

      10.1016/j.resinv.2020.05.008

    • Related Report
      2020 Research-status Report
    • Peer Reviewed
  • [Journal Article] Serum mitochondrial DNA predicts the risk of acute exacerbation and progression of idiopathic pulmonary fibrosis2020

    • Author(s)
      Sakamoto Koji、Furukawa Taiki、Yamano Yasuhiko、Kataoka Kensuke、Teramachi Ryo、Walia Anjali、Suzuki Atsushi、Inoue Masahide、Nakahara Yoshio、Ryu Changwan、Hashimoto Naozumi、Kondoh Yasuhiro
    • Journal Title

      European Respiratory Journal

      Volume: 57 Issue: 1 Pages: 2001346-2001346

    • DOI

      10.1183/13993003.01346-2020

    • Related Report
      2020 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Prognostic Impact and Risk Factors of Immune-Related Pneumonitis in Patients With Non?Small-Cell Lung Cancer Who Received Programmed Death 1 Inhibitors2019

    • Author(s)
      Fukihara Jun、Sakamoto Koji、Koyama Junji、Ito Takayasu、Iwano Shingo、Morise Masahiro、Ogawa Masahiro、Kondoh Yasuhiro、Kimura Tomoki、Hashimoto Naozumi、Hasegawa Yoshinori
    • Journal Title

      Clinical Lung Cancer

      Volume: 20 Issue: 6 Pages: 442-450.e4

    • DOI

      10.1016/j.cllc.2019.07.006

    • Related Report
      2019 Research-status Report
    • Peer Reviewed
  • [Journal Article] Repressive role of stabilized hypoxia inducible factor 1α expression on transforming growth factor β‐induced extracellular matrix production in lung cancer cells2019

    • Author(s)
      Ando Akira、Hashimoto Naozumi、Sakamoto Koji、Omote Norihito、Miyazaki Shinichi、Nakahara Yoshio、Imaizumi Kazuyoshi、Kawabe Tsutomu、Hasegawa Yoshinori
    • Journal Title

      Cancer Science

      Volume: 110 Issue: 6 Pages: 1959-1973

    • DOI

      10.1111/cas.14027

    • Related Report
      2019 Research-status Report
    • Peer Reviewed
  • [Journal Article] Reply to “Prognostic Impact and Risk Factors of Immune-Related Pneumonitis in Patients With Non?Small-Cell Lung Cancer Who Received Programmed Death-1 Inhibitors”2019

    • Author(s)
      Fukihara Jun、Sakamoto Koji、Koyama Junji、Ito Takayasu、Iwano Shingo、Morise Masahiro、Ogawa Masahiro、Kondoh Yasuhiro、Kimura Tomoki、Hashimoto Naozumi、Hasegawa Yoshinori
    • Journal Title

      Clinical Lung Cancer

      Volume: 19 Issue: 3 Pages: 30330-4

    • DOI

      10.1016/j.cllc.2019.11.013

    • Related Report
      2019 Research-status Report
    • Peer Reviewed
  • [Presentation] Meflin-BMP3b Axis Is a Novel Anti-Fibrotic Pathway Against TGF-βInduced Lung Fibrogenesis2022

    • Author(s)
      A. Suzuki , K. Sakamoto , Y. Nakahara , A. Enomoto , J. Hino , A. Ando , M. Inoue , N. Omote , M. Kusaka , J. Fukihara , N. Hashimoto
    • Organizer
      American Thoracic Society 2022 International Conference
    • Related Report
      2022 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Increased Circulating Mitochondrial DNA Content Predicts Fatal Complication and Worse Prognosis in Idiopathic Pulmonary Fibrosis2020

    • Author(s)
      K. Sakamoto, T. Furukawa, Y. Yamano, R. Teramachi, A. Suzuki, Y. Nakahara, M. Inoue, K. Kataoka, N. Hashimoto, Y. Kondoh, Y. Hasegawa
    • Organizer
      American Thoracic Society 2020 International Conference
    • Related Report
      2020 Research-status Report
    • Int'l Joint Research
  • [Presentation] Single-Cell RNAseq of Aging Mouse Lungs Reveals Global and Cell-Specific Inflammatory Aberrations2020

    • Author(s)
      C. Cosme Jr., J.E. McDonough, T. Adams, J.C. Schupp, N. Omote, F. Ahangari, G. DeIuliis, K. Sakamoto, N. Kaminski
    • Organizer
      American Thoracic Society 2020 International Conference
    • Related Report
      2020 Research-status Report
    • Int'l Joint Research
  • [Presentation] The Role of Meflin Expression in Fibroblasts During Development of Pulmonary Fibrosis2020

    • Author(s)
      N. Hashimoto, Y. Nakahara, K. Sakamoto, A. Enomoto, T. Yokoi, A. Suzuki, M. Inoue, K. Wakahara, Y. Hasegawa
    • Organizer
      American Thoracic Society 2020 International Conference
    • Related Report
      2020 Research-status Report
    • Int'l Joint Research
  • [Presentation] Long Non-Coding RNA TINCR Is a Novel Regulator of Human Bronchial Epithelial Cell Differentiation2020

    • Author(s)
      N. Omote, K. Sakamoto, Q. Li, J.C. Schupp, T. Adams, F. Ahangari, M. Chioccioli, N. Hashimoto, Y. Hasegawa, N. Kaminski
    • Organizer
      American Thoracic Society 2020 International Conference
    • Related Report
      2020 Research-status Report
    • Int'l Joint Research
  • [Presentation] Pirfenidone Delays the Prescription of Concomitant Drugs in Patients with Idiopathic Pulmonary Fibrosis: Post-Hoc Analysis of Japanese Phase III Clinical Trial2020

    • Author(s)
      A. Suzuki, H. Sakaguchi, M. Ebina, A. Azuma, T. Ogura, Y. Taguchi, M. Suga, H. Takahashi, Y. Sugiyama, S. Kudoh, T. Nukiwa , S. Miyazawa, K. Sakamoto, Y. Kondoh
    • Organizer
      American Thoracic Society 2020 International Conference
    • Related Report
      2020 Research-status Report
    • Int'l Joint Research
  • [Presentation] Assessment of circulating mitochondrial DNA as a liquid biomarker in acute exacerbation of idiopathic pulmonary fibrosis2019

    • Author(s)
      Koji Sakamoto, Taiki Furukawa, Kensuke Kataoka, Yasuhiro Kondoh, Yoshinori Hasegawa
    • Organizer
      American Thoracic Society 2019 International Conference
    • Related Report
      2019 Research-status Report
    • Int'l Joint Research
  • [Presentation] Loss of lncRNA FENDRR Induces Senescence in Adult Mouse Lungs2019

    • Author(s)
      N. Xylourgidis, K. Sakamoto, J. C. Schupp, T. Adams, G. DeIuliis, N. Omote, N. Hashimoto, Y. Hasegawa, N. Kaminski
    • Organizer
      American Thoracic Society 2019 International Conference
    • Related Report
      2019 Research-status Report
    • Int'l Joint Research
  • [Presentation] TINCR, a Long Intergenic Noncoding RNA Decreased in IPF, Is a Novel Regulator of Airway Epithelial Cell Differentiation2019

    • Author(s)
      N. Omote, K. Sakamoto, Q. Li, J. C. Schupp, T. Adams, F. Ahangari, M. Chioccioli, N. Xylourgidis, G. DeIuliis, N. Hashimoto, Y. Hasegawa, N. Kaminski
    • Organizer
      American Thoracic Society 2019 International Conference
    • Related Report
      2019 Research-status Report
    • Int'l Joint Research
  • [Presentation] Assessment of Circulating Mitochondrial DNA as a Liquid Biomarker in Acute Exacerbation of Idiopathic Pulmonary Fibrosis2019

    • Author(s)
      Koji Sakamoto
    • Organizer
      2019 ATS International Conference
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research
  • [Presentation] Acute exacerbation of pleuroparenchymal fibroelastosis in patient status post hematopoietic stem cell transplantation2018

    • Author(s)
      Koji Sakamoto
    • Organizer
      23th Congress of the Asian Pacific Society of Respirology
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research
  • [Remarks] 特発性肺線維症の病気の進行や急性増悪を予測できる 新規の血液指標(ミトコンドリア DNA)を発見!

    • URL

      https://research-er.jp/articles/view/91640

    • Related Report
      2020 Research-status Report

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Published: 2018-04-23   Modified: 2024-01-30  

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