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Development of a Medical Image Reconstruction Method Using Deep Learning of Time Series Signals from Biometric Measurements

Research Project

Project/Area Number 18K18357
Research Category

Grant-in-Aid for Early-Career Scientists

Allocation TypeMulti-year Fund
Review Section Basic Section 90110:Biomedical engineering-related
Research InstitutionThe University of Tokyo

Principal Investigator

Tomii Naoki  東京大学, 大学院医学系研究科(医学部), 助教 (00803602)

Project Period (FY) 2018-04-01 – 2021-03-31
Project Status Completed (Fiscal Year 2020)
Budget Amount *help
¥3,900,000 (Direct Cost: ¥3,000,000、Indirect Cost: ¥900,000)
Fiscal Year 2020: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2019: ¥1,040,000 (Direct Cost: ¥800,000、Indirect Cost: ¥240,000)
Fiscal Year 2018: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Keywords医用画像再構成 / 深層学習 / 超音波計測 / 心電図計測 / 不整脈 / 心臓電極マッピング / 超音波診断 / in silico学習 / 膜電位動画再構成 / Bモード画像再構成 / 学習データセット構築 / 生体計測
Outline of Final Research Achievements

This study aims to expand the application of simple biomedical measurement methods, such as ultrasound and bioelectrical measurements, to the precise diagnosis of various diseases, and to construct an image reconstruction method that is robust against inhomogeneities in the body by applying pattern recognition based on machine learning. As a result of training a deep neural network that reconstructs medical images from measurement signals with large-scale training data using numerical simulations for both ultrasound and ECG measurements, it was found that it is possible to reconstruct highly accurate medical images from limited measurement signals with higher precision than conventional methods.

Academic Significance and Societal Importance of the Research Achievements

本研究を通じて、深層学習によって従来より高画質な超音波計測が実現できる可能性が示された。これにより将来的に、現状では画質が限られる超音波画像診断をより精密な診断に応用できる可能性が開かれた。さらに、カテーテルを用いた心内心電図信号から、心臓内に発生する電気的興奮波を、興奮回復特性まで含めて従来よりも精密に可視化できる可能性が示された。これにより現状では治療の難しい複雑な不整脈に対し、正確な興奮状態の把握に基づく焼灼等の精密治療の可能性が開かれた。

Report

(4 results)
  • 2020 Annual Research Report   Final Research Report ( PDF )
  • 2019 Research-status Report
  • 2018 Research-status Report
  • Research Products

    (31 results)

All 2021 2020 2019 2018

All Journal Article (9 results) (of which Int'l Joint Research: 6 results,  Peer Reviewed: 8 results,  Open Access: 4 results) Presentation (20 results) (of which Int'l Joint Research: 2 results,  Invited: 1 results) Patent(Industrial Property Rights) (2 results)

  • [Journal Article] Cardiac macrophages prevent sudden death during heart stress.2021

    • Author(s)
      Sugita J, Fujiu K, Nakayama Y, Matsubara T, Matsuda J, Oshima T, Liu Y, Maru Y, Hasumi E, Kojima T, Seno H, Asano K, Ishijima A, Tomii N, Yamazaki M, Kudo F, Sakuma I, Nagai R, Manabe I, Komuro I.
    • Journal Title

      Nat Commun.

      Volume: 12(1) Issue: 1 Pages: 1910-1910

    • DOI

      10.1038/s41467-021-22178-0

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Spatial phase discontinuity at the center of moving cardiac spiral waves2021

    • Author(s)
      Tomii Naoki、Yamazaki Masatoshi、Ashihara Takashi、Nakazawa Kazuo、Shibata Nitaro、Honjo Haruo、Sakuma Ichiro
    • Journal Title

      Computers in Biology and Medicine

      Volume: 130 Pages: 104217-104217

    • DOI

      10.1016/j.compbiomed.2021.104217

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Validation of Intraoperative Catheter Phase Mapping Using a Simultaneous Optical Measurement System in Rabbit Ventricular Myocardium2020

    • Author(s)
      Tomii N, Asano K, Seno H, Ashihara T, Sakuma I, Yamazaki
    • Journal Title

      Circulation Journal

      Volume: 84 Issue: 4 Pages: 609-615

    • DOI

      10.1253/circj.CJ-19-1020

    • NAID

      130007815573

    • ISSN
      1346-9843, 1347-4820
    • Year and Date
      2020-03-25
    • Related Report
      2019 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Shape Estimation Algorithm for Ultrasound Imaging by Flexible Array Transducer2020

    • Author(s)
      Noda Takumi、Tomii Naoki、Nakagawa Keiichi、Azuma Takashi、Sakuma Ichiro
    • Journal Title

      IEEE Transactions on Ultrasonics, Ferroelectrics, and Frequency Control

      Volume: 67 Issue: 11 Pages: 2345-2353

    • DOI

      10.1109/tuffc.2020.3004052

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Mechanism of Electrical Defibrillation: Current Status and Future Perspective2020

    • Author(s)
      Shibata Nitaro、Inada Shin、Nakazawa Kazuo、Tomii Naoki、Yamazaki Masatoshi、Seno Hiroshi、Honjo Haruo、Sakuma Ichiro
    • Journal Title

      Advanced Biomedical Engineering

      Volume: 9 Issue: 0 Pages: 125-137

    • DOI

      10.14326/abe.9.125

    • NAID

      130007882170

    • ISSN
      2187-5219
    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Cardiac Spiral Wave Termination by Linear Regional Cooling toward Anatomical Boundary of Heart2020

    • Author(s)
      Seno H, Tomii N, Yamazaki M, Honjo H, Shibata N, Sakuma I
    • Journal Title

      Journal of Medical and Biological Engineering

      Volume: in press Issue: 3 Pages: 400-408

    • DOI

      10.1007/s40846-020-00517-8

    • Related Report
      2019 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Spiral Wave Reentry Control by Electrical Stimulus-Induced Virtual Electrode Polarization2019

    • Author(s)
      谷田部純弥、山﨑正俊、柴田仁太郎、富井直輝、佐久間一郎
    • Journal Title

      Transactions of Japanese Society for Medical and Biological Engineering

      Volume: 57 Issue: 2-3 Pages: 49-57

    • DOI

      10.11239/jsmbe.57.49

    • NAID

      130007691681

    • ISSN
      1347-443X, 1881-4379
    • Year and Date
      2019-06-10
    • Related Report
      2019 Research-status Report
    • Peer Reviewed
  • [Journal Article] Interaction of Phase Singularities on Spiral Wave Tail: Reconsideration of Caputuring Excitable Gap.2018

    • Author(s)
      Tomii N, Yamazaki M, Arafune T, Kamiya K, Nakazawa K, Honjo H, Shibata N, Sakuma I.
    • Journal Title

      Am J Physiol Heart Circ Physiol.

      Volume: in press Issue: 2 Pages: 318-326

    • DOI

      10.1152/ajpheart.00558.2017

    • Related Report
      2018 Research-status Report
    • Peer Reviewed
  • [Journal Article] 位相分散解析 : 心臓旋回興奮波の追跡と制御2018

    • Author(s)
      富井直輝,佐久間一郎
    • Journal Title

      計測と制御 : journal of the Society of Instrument and Control Engineers

      Volume: 57 Pages: 576-581

    • NAID

      130007438862

    • Related Report
      2018 Research-status Report
  • [Presentation] ホルター心電図の診断精度向上に向けた深層学習によるノイズ検出モデルの提案2020

    • Author(s)
      久次米康太,富井直輝,瀬野宏,山崎正俊,佐久間一郎
    • Organizer
      第30回ライフサポート学会フロンティア講演会
    • Related Report
      2020 Annual Research Report
  • [Presentation] 適応的除細動刺激の効果検証のための3次元パノラマ光学・電極同時計測システムの開発2020

    • Author(s)
      古川航暉,富井直輝,山崎正俊,佐久間一郎
    • Organizer
      日本生体医工学会関東支部若手研究者発表会2020
    • Related Report
      2020 Annual Research Report
  • [Presentation] 深層学習を用いた腹腔鏡下における術具の3次元位置姿勢推定2020

    • Author(s)
      石川宏輔,原一晃,赤木友紀,中川桂一,佐久間一郎,富井直輝,小林英津子
    • Organizer
      第59回日本生体医工学会大会
    • Related Report
      2020 Annual Research Report
  • [Presentation] 心臓全体多電極マッピングの精度検証に向けた光学電極同時計測システムの構築2020

    • Author(s)
      浅野圭佑,富井直輝,瀬野宏,加藤敦也,白石諒太,中川圭一,赤木友紀,山崎正俊,佐久間一郎
    • Organizer
      第59回日本生体医工学会大会
    • Related Report
      2020 Annual Research Report
  • [Presentation] 心臓局所冷却による頻脈性不整脈制御の試み2020

    • Author(s)
      瀬野宏,富井直輝,山崎正俊,本荘晴朗,柴田仁太郎,佐久間一郎
    • Organizer
      第59回日本生体医工学会大会
    • Related Report
      2020 Annual Research Report
  • [Presentation] 心臓表面における光学マッピング電極信号同時計測系の構築2020

    • Author(s)
      加藤敦也,富井直輝,山崎正俊,中川桂一,赤木友紀,佐久間一郎
    • Organizer
      第29回ライフサポート学会フロンティア講演会
    • Related Report
      2019 Research-status Report
  • [Presentation] Self-shape estimation algorithm for flexible ultrasonic transducer array probe by minimizing entropy of reconstructed image2019

    • Author(s)
      Noda T, Tomii N, Azuma T, Sakuma I
    • Organizer
      2019 IEEE International Ultrasonics Symposium
    • Related Report
      2019 Research-status Report
  • [Presentation] Ultrasound Computed Tomography to Image Objects Including Bone using RF Data Recovery with Deep Neural Network2019

    • Author(s)
      Watanabe Y, Tomii N, Takagi S, Azuma T
    • Organizer
      2019 IEEE International Ultrasonics Symposium
    • Related Report
      2019 Research-status Report
  • [Presentation] Attention-Guided Decoder in Dilated Residual Network for Accurate Aortic Valve Segmentation in 3D CT Scans2019

    • Author(s)
      Fan B, Tomii N, Tsukihara H, Maeda E, Yamauchi H, Nawata K, Hatano A, Takagi S, Sakuma I, Ono M
    • Organizer
      Machine Learning and Medical Engineering for Cardiovascular Health and Intravascular Imaging and Computer Assisted Stenting
    • Related Report
      2019 Research-status Report
  • [Presentation] Deep Neural Network for Estimation of Membrane Potential Distribution from Multiple Electrode Measurement Signals -- A Simulation Study2019

    • Author(s)
      Tomii N, Jiao J, Yamazaki M, Ashihara T, Sakuma I
    • Organizer
      第66回日本不整脈心電学会学術集会
    • Related Report
      2019 Research-status Report
  • [Presentation] 深層学習と電気生理シミュレーションを用いた電極信号に基づく心臓膜電位分布推定手法の検討2019

    • Author(s)
      富井直輝,ジャオジャミン,山崎正俊,佐久間一郎
    • Organizer
      第58回日本生体医工学会大会
    • Related Report
      2019 Research-status Report
  • [Presentation] フレキシブル超音波プローブによる撮像のための形状推定アルゴリズムの開発2019

    • Author(s)
      野田拓実,富井直輝,東隆,佐久間一郎
    • Organizer
      生体医工学会関東支部若手研究者発表会2019
    • Related Report
      2019 Research-status Report
  • [Presentation] Computer Simulation Study for the Control of Cardiac Spiral Wave by Linear Regional Cooling2018

    • Author(s)
      Hiroshi Seno, Naoki Tomii, Masatoshi Yamazaki, Haruo Honjo, Nitaro Shibata, Ichiro Shibata
    • Organizer
      11th Asia Pacific Heart Rhythm Society Scientific Session
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research
  • [Presentation] Statistical Guideline of Threshold Determination for Cardiac Spiral Wave Center Detection Using Phase Variance Analysis2018

    • Author(s)
      Naoki Tomii, Masatoshi Yamazaki, Nitaro Shibata, Haruo Honjo, Ichiro Sakuma,
    • Organizer
      World Congress on Medical Physics and Biomedical Engineering 2018
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research
  • [Presentation] スパイラル・リエントリの検出・追跡・制御2018

    • Author(s)
      富井直輝
    • Organizer
      HEAN Forum
    • Related Report
      2018 Research-status Report
    • Invited
  • [Presentation] 画像のコントラストを用いたフレキシブルプローブの自己形状推定アルゴリズムの開発2018

    • Author(s)
      野田拓実,東隆,富井直輝,佐久間一郎
    • Organizer
      日本生体医工学会関東支部若手研究者発表会2018
    • Related Report
      2018 Research-status Report
  • [Presentation] Compressed Laminar Optical Tomography (CLOT)計測を可能とする光学計測システムの開発2018

    • Author(s)
      小林俊輝,富井直輝,山崎正俊,柴田仁太郎,佐久間一郎
    • Organizer
      生体医工学シンポジウム2018
    • Related Report
      2018 Research-status Report
  • [Presentation] シミュレーションモデルを用いた線状局所冷却による冷却除細動の検討2018

    • Author(s)
      瀬野宏,富井直輝,山崎正俊,本荘晴朗,神谷香一郎,柴田仁太郎,佐久間一郎
    • Organizer
      第33回心電情報処理ワークショップ
    • Related Report
      2018 Research-status Report
  • [Presentation] 心臓旋回性興奮動態の位相分散解析2018

    • Author(s)
      富井直輝,瀬野宏,山崎正俊,本荘晴朗,柴田仁太郎,佐久間一郎
    • Organizer
      第57回日本生体医工学会大会
    • Related Report
      2018 Research-status Report
  • [Presentation] 時空間興奮分散を指標にした心房細動治療法2018

    • Author(s)
      山崎正俊,富井直輝,佐久間 一郎
    • Organizer
      第57回日本生体医工学会大会
    • Related Report
      2018 Research-status Report
  • [Patent(Industrial Property Rights)] 超音波撮像装置2019

    • Inventor(s)
      富井直輝,佐久間一郎,東隆,野田拓実
    • Industrial Property Rights Holder
      国立大学法人東京大学
    • Industrial Property Rights Type
      特許
    • Industrial Property Number
      2019-173457
    • Filing Date
      2019
    • Related Report
      2019 Research-status Report
  • [Patent(Industrial Property Rights)] 生体組織の電極配置推定方法2019

    • Inventor(s)
      富井直輝,佐久間一郎,山崎正俊,ジャオジャミン
    • Industrial Property Rights Holder
      国立大学法人東京大学
    • Industrial Property Rights Type
      特許
    • Industrial Property Number
      2019-010999
    • Filing Date
      2019
    • Related Report
      2018 Research-status Report

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Published: 2018-04-23   Modified: 2022-01-27  

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