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Imaging studies of neurodegeneration by deep learning

Research Project

Project/Area Number 18K18452
Research Category

Grant-in-Aid for Challenging Research (Exploratory)

Allocation TypeMulti-year Fund
Review Section Studies on the Super-Aging Society
Research InstitutionKyoto University

Principal Investigator

Haruhisa Inoue  京都大学, iPS細胞研究所, 教授 (70332327)

Co-Investigator(Kenkyū-buntansha) 近藤 孝之  京都大学, iPS細胞研究所, 特定拠点講師 (80536566)
矢田 祐一郎  国立研究開発法人理化学研究所, バイオリソース研究センター, 特別研究員 (80805797)
Project Period (FY) 2018-06-29 – 2021-03-31
Project Status Completed (Fiscal Year 2020)
Budget Amount *help
¥6,370,000 (Direct Cost: ¥4,900,000、Indirect Cost: ¥1,470,000)
Fiscal Year 2020: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Fiscal Year 2019: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Fiscal Year 2018: ¥2,470,000 (Direct Cost: ¥1,900,000、Indirect Cost: ¥570,000)
KeywordsALS / Deep Learning / 超早期病態 / 診断 / データサイエンス / Deep learning / deep learning / 神経変性 / 超高齢社会 / アルツハイマー病 / iPS細胞
Outline of Final Research Achievements

In neurodegenerative diseases including ALS, it is necessary to detect and elucidate the pathogenesis of very early lesions. In this study, we generated and imaged motor neurons using iPS cells from healthy subjects and ALS patients, and collected a copious amount of image information. This information was trained by deep learning, which can analyze thousands of dimensions, to identify very early pathological changes that cannot be detected by conventional analysis, and to obtain an index to predict neurodegeneration. Deep learning detected lesions in ALS motor neurons that were undetectable by conventional analysis. The results suggest that deep learning can support the diagnosis of ALS and that this method may help to promote ALS treatment in the future.

Academic Significance and Societal Importance of the Research Achievements

本研究では、人工知能(Artificial Intelligence: AI)を用いて、神経難病である筋萎縮性側索硬化症(ALS)の病態の検知・診断への応用を目指した研究を行いました。
本研究では、人間の考えを挟むことなく大量のデータからその特徴を抽出できるDeep LearningというAIとiPS細胞由来運動神経細胞を用いて、ALSを予測するAIモデルを構築しました。本研究成果は、今後のAIとiPS細胞のテクノロジー融合による疾患予測と克服に貢献することが期待されます。

Report

(4 results)
  • 2020 Annual Research Report   Final Research Report ( PDF )
  • 2019 Research-status Report
  • 2018 Research-status Report
  • Research Products

    (52 results)

All 2021 2020 2019

All Journal Article (19 results) (of which Int'l Joint Research: 2 results,  Peer Reviewed: 10 results,  Open Access: 10 results) Presentation (32 results) (of which Int'l Joint Research: 3 results,  Invited: 31 results) Book (1 results)

  • [Journal Article] Dopaminergic neurons in chromosome 22q11.2 deletion syndrome2021

    • Author(s)
      Inoue Haruhisa
    • Journal Title

      EBioMedicine

      Volume: 63 Pages: 103180-103180

    • DOI

      10.1016/j.ebiom.2020.103180

    • Related Report
      2020 Annual Research Report
    • Open Access
  • [Journal Article] Prediction Model of Amyotrophic Lateral Sclerosis by Deep Learning with Patient Induced Pluripotent Stem Cells2021

    • Author(s)
      Imamura Keiko、Yada Yuichiro、Izumi Yuishin、Morita Mitsuya、Kawata Akihiro、Arisato Takayo、Nagahashi Ayako、Enami Takako、Tsukita Kayoko、Kawakami Hideshi、Nakagawa Masanori、Takahashi Ryosuke、Inoue Haruhisa
    • Journal Title

      Annals of Neurology

      Volume: in press Issue: 6 Pages: 26047-26047

    • DOI

      10.1002/ana.26047

    • NAID

      120006979780

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] MicroRNA-33 maintains adaptive thermogenesis via enhanced sympathetic nerve activity.2021

    • Author(s)
      Horie T, Nakao T, Miyasaka Y, Nishino T, Matsumura S, Nakazeki F, Ide Y, Kimura M, Tsuji S, Ruiz Rodriguez R, WatanabeT, Yamasaki T, Xu S, Otani C, Miyagawa S, Matsushita K, Sowa N, Omori A, Tanaka J, Nishimura C, Picciotto MR, Inoue H, Watanabe D, Nakamura K, Sasaki T, Kimura T, Ono K, et al.
    • Journal Title

      Nat Commun.

      Volume: 12 Issue: 1 Pages: 843-843

    • DOI

      10.1038/s41467-021-21107-5

    • NAID

      120006958077

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Reprogramming the brain in and out of diseased states2021

    • Author(s)
      Karagiannis Peter、Muotri Alysson、Inoue Haruhisa
    • Journal Title

      Molecular and Cellular Neuroscience

      Volume: 110 Pages: 103571-103571

    • DOI

      10.1016/j.mcn.2020.103571

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] 脳オルガノイドによるマイ・メディシン2021

    • Author(s)
      松島早希、今村恵子、井上治久
    • Journal Title

      医学のあゆみ

      Volume: 276

    • Related Report
      2020 Annual Research Report
  • [Journal Article] Generation of a human induced pluripotent stem cell line derived from a Parkinson's disease patient carrying SNCA duplication2020

    • Author(s)
      Hidefumi Suzuki et al.
    • Journal Title

      Stem Cell Research

      Volume: 45 Pages: 101828-101828

    • DOI

      10.1016/j.scr.2020.101828

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Prediction of compound bioactivities using heat-diffusion equation2020

    • Author(s)
      T. Hidaka, K. Imamura, T. Hioki, T. Takagi, Y. Giga, M.-H. Giga, Y. Nishimura, Y. Kawahara, S. Hayashi, T. Niki, M. Fushimi and H. Inoue
    • Journal Title

      Patterns

      Volume: 1 Issue: 9 Pages: 100140-100140

    • DOI

      10.1016/j.patter.2020.100140

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Generation of a human induced pluripotent stem cell line, BRCi009-A, derived from a patient with glycogen storage disease type 1a2020

    • Author(s)
      Katagami Yukimi、Kondo Takayuki、Suga Mika、Yada Yuichiro、Imamura Keiko、Shibukawa Ran、Sagara Yukako、Okanishi Yasue、Tsukita Kayoko、Hirayama Kenji、Era Takumi、Inoue Haruhisa
    • Journal Title

      Stem Cell Research

      Volume: 49 Pages: 102095-102095

    • DOI

      10.1016/j.scr.2020.102095

    • NAID

      120006980737

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] From in vitro to in vivo reprogramming for neural transdifferentiation: An approach for CNS tissue remodeling using stem cell technology2020

    • Author(s)
      Egawa Naohiro、Suzuki Hidefumi、Takahashi Ryosuke、Hayakawa Kazuhide、Li Wenlu、Lo Eng H、Arai Ken、Inoue Haruhisa
    • Journal Title

      Journal of Cerebral Blood Flow & Metabolism

      Volume: 40 Issue: 9 Pages: 1739-1751

    • DOI

      10.1177/0271678x20910324

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] ALS, a cellular whodunit on motor neuron degeneration2020

    • Author(s)
      Karagiannis Peter、Inoue Haruhisa
    • Journal Title

      Molecular and Cellular Neuroscience

      Volume: 107 Pages: 103524-103524

    • DOI

      10.1016/j.mcn.2020.103524

    • Related Report
      2020 Annual Research Report
    • Open Access
  • [Journal Article] 疾患特異的iPS細胞、神経変性疾患の治療開発の現状-新たな戦略構築の基盤を目指してー2020

    • Author(s)
      奥宮太郎、坂野晴彦、井上治久
    • Journal Title

      医学のあゆみ

      Volume: 273 Pages: 111-118

    • Related Report
      2020 Annual Research Report
  • [Journal Article] 神経変性疾患に対するiPS創薬と臨床試験2020

    • Author(s)
      坂野晴彦、奥宮太郎、井上治久
    • Journal Title

      医学のあゆみ

      Volume: 275 Pages: 287-294

    • Related Report
      2020 Annual Research Report
  • [Journal Article] iPS細胞技術を用いたアルツハイマー病研究2020

    • Author(s)
      奥宮太郎、坂野晴彦、井上治久
    • Journal Title

      認知症の最新医療

      Volume: 11 Pages: 30-36

    • Related Report
      2020 Annual Research Report
  • [Journal Article] An Approach for CNS Tissue Remodeling using Stem Cell Technology, Journal of Cerebral Blood Flow and Metabolism2020

    • Author(s)
      Egawa N, Suzuki H, Takahashi R, Hayakawa K, Li W, Lo E, Arai K, Inoue H
    • Journal Title

      Journal of Cerebral Blood Flow and Metabolism

      Volume: -

    • Related Report
      2019 Research-status Report
    • Peer Reviewed
  • [Journal Article] iPS細胞技術によるALS研究, 特集ALS(筋萎縮性側索硬化症)治療の最前線2020

    • Author(s)
      川澄侑哉,今村恵子,井上治久
    • Journal Title

      週刊 医学のあゆみ

      Volume: 第272巻6号

    • NAID

      40022144958

    • Related Report
      2019 Research-status Report
  • [Journal Article] Modeling Neurological Disorders with Human Pluripotent Stem Cell-Derived Astrocytes2019

    • Author(s)
      Suga Mika、Kondo Takayuki、Inoue Haruhisa
    • Journal Title

      International Journal of Molecular Sciences

      Volume: 20 Issue: 16 Pages: 3862-3862

    • DOI

      10.3390/ijms20163862

    • Related Report
      2019 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Brief review: Can modulating DNA methylation state help the clinical application of oligodendrocyte precursor cells as a source of stem cell therapy?2019

    • Author(s)
      Egawa Naohiro、Chung Kelly K.、Takahashi Ryosuke、Lo Eng H.、Inoue Haruhisa、Arai Ken
    • Journal Title

      Brain Research

      Volume: 1723 Pages: 146386-146386

    • DOI

      10.1016/j.brainres.2019.146386

    • Related Report
      2019 Research-status Report
    • Peer Reviewed
  • [Journal Article] iPS細胞のシングルセル遺伝子発現解析, シングルセルゲノミクス組織の機能、病態が1細胞レベルで見え てきた!2019

    • Author(s)
      今村恵子,渡辺 亮, 井上治
    • Journal Title

      実験医学増刊

      Volume: Vol.37 No.20

    • Related Report
      2019 Research-status Report
  • [Journal Article] 疾患特異的iPS細胞を用いた病態解明と創薬研究, 実験医学, iPS細胞のいま 基盤となるサイエンスと創 薬・医療現場への道しるべ 山中伸弥/企画2019

    • Author(s)
      仁木剛史,今村恵子,井上治久
    • Journal Title

      実験医学2020年1月号

      Volume: Vol.38 No.1

    • Related Report
      2019 Research-status Report
  • [Presentation] Department of Drug Discovery Medicine.iPS細胞を用いた脳神経疾患研究2021

    • Author(s)
      井上治久
    • Organizer
      京都大学大学院医学研究科 創薬医学講座セミナー
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] Generation of a human induced pluripotent stem cell line derived from a Parkinson’s disease patient with SNCA duplication2021

    • Author(s)
      Hidefumi Suzukia, Naohiro Egawa, Takayuki Kondo, Keiko Imamuraa, Takako Enami, Kayoko Tsukita, Mika Suga, Ran Shibukawa, Yasue Okanishi, Tsuyoshi Uchiyama, Haruhisa Inoue, Ryosuke Takahashi
    • Organizer
      第14回パーキンソン病・運動障害疾患コングレス
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] iPS細胞を用いた創薬応用の最前線2021

    • Author(s)
      井上治久
    • Organizer
      第7回 再生医療EXPO大阪
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] テクノロジーとともに開く新時代の医療疾患特異的オルガノイドによる脳神経疾患研究(Neurological disease research using disease-specific organoids)2021

    • Author(s)
      井上治久
    • Organizer
      第20回日本再生医療学会総会
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] 幹細胞を用いた神経疾患研究, iPS細胞を用いた神経疾患に対する病態解明と治療戦略2020

    • Author(s)
      井上治久
    • Organizer
      第19回日本再生医療学会総会
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] Basic and translational disease modeling with patient iPSC-derived neural cells, Modeling Development and Disease: Neural2020

    • Author(s)
      Inoue Haruhisa
    • Organizer
      ISSCR 2020 VIRTUAL
    • Related Report
      2020 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 幹細胞を用いた神経疾患研究 iPS細胞研究の最前線2020

    • Author(s)
      井上治久
    • Organizer
      第41回 日本炎症・再生医学会
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] トランスレーショナルリサーチのための神経疾患iPS細胞モデリング2020

    • Author(s)
      井上治久
    • Organizer
      京都大学医学部附属病院先端医療研究開発機構医療開発部
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] Dementia research using human stem cell models,Digital approaches for dementia medicine and biology2020

    • Author(s)
      Haruhisa Inoue
    • Organizer
      第43回日本神経科学大会
    • Related Report
      2020 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Generation of a human induced pluripotent stem cell line derived from a Parkinson’s disease patient demonstrating SNCA duplication(ポスター発表)2020

    • Author(s)
      Hidefumi Suzukia, Naohiro Egawa, Takayuki Kondo, Keiko Imamuraa, Takako Enami, Kayoko Tsukita, Mika Suga, Ran Shibukawa, Yasue Okanishi, Tsuyoshi Uchiyama, Haruhisa Inoue, Ryosuke Takahashi
    • Organizer
      第43回日本神経科学大会
    • Related Report
      2020 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Extracellular Tau as a therapeutic target of FTLD2020

    • Author(s)
      Haruhisa Inoue
    • Organizer
      open-access NRI Webinar series, Neuroregeneration Institute, McLean Hospital/Harvard Medical School
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] 幹細胞を用いた神経疾患研究2020

    • Author(s)
      井上治久
    • Organizer
      第25回日本難病看護学会 第8回日本難病医療ネットワーク学会 合同学術集会
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] リプログラミング技術を用いた認知症の研究2020

    • Author(s)
      井上治久
    • Organizer
      第39回日本認知症学会学術集会
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] 疾患iPS細胞を用いた神経疾患の創薬研究2020

    • Author(s)
      今村恵子、井上治久
    • Organizer
      第6回日本筋学会学術集会
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] 脳神経疾患iPS細胞研究Update2020

    • Author(s)
      井上治久
    • Organizer
      講演Ⅱ,第11回 西播磨ブレインサイエンス研究会, 西播磨ブレインサイエンス研究会 武田薬品工業株式会社
    • Related Report
      2019 Research-status Report
    • Invited
  • [Presentation] 幹細胞を用いた神経疾患研究2019

    • Author(s)
      井上治久
    • Organizer
      新適塾 -「未来創薬への誘い」第46回会合, 公益財団法人千里ライフサイエンス振興財団
    • Related Report
      2019 Research-status Report
    • Invited
  • [Presentation] iPS細胞/幹細胞が拓く最新医学研究2019

    • Author(s)
      井上治久
    • Organizer
      第67回日本輸血・細胞治療学会学術総会
    • Related Report
      2019 Research-status Report
    • Invited
  • [Presentation] iPS細胞を用いた神経疾患研究2019

    • Author(s)
      井上治久
    • Organizer
      第19回奈良認知症研究会
    • Related Report
      2019 Research-status Report
    • Invited
  • [Presentation] iPS細胞を用いた神経疾患の研究2019

    • Author(s)
      井上治久
    • Organizer
      令和元年度芝蘭会三重支部総会
    • Related Report
      2019 Research-status Report
    • Invited
  • [Presentation] 脳神経疾患iPS細胞研究,Update Brain iPSC research: Review and Update2019

    • Author(s)
      井上治久
    • Organizer
      NEURO2019 ランチョンセミナー
    • Related Report
      2019 Research-status Report
    • Invited
  • [Presentation] 神経変性疾患iPS細胞を用いた神経科学研究,Translational neuroscience using neurodegenerative disease iPSCs2019

    • Author(s)
      井上治久
    • Organizer
      NEURO2019
    • Related Report
      2019 Research-status Report
    • Invited
  • [Presentation] オールジャパンブレインネットワーク構築に基づく難治性精神・神経疾患根治療法開発,iPS細胞を用いた希少神経難病の研究,From rare to common neurological diseases using iPSCs2019

    • Author(s)
      井上治久
    • Organizer
      NEURO2019
    • Related Report
      2019 Research-status Report
    • Invited
  • [Presentation] Understanding the molecular basis of neuropsychiatric disorders,From rare to common neurological diseases;patient iPSC study2019

    • Author(s)
      井上治久
    • Organizer
      Forum RIKEN Symposium
    • Related Report
      2019 Research-status Report
    • Invited
  • [Presentation] 幹細胞を用いた神経疾患研究2019

    • Author(s)
      井上治久
    • Organizer
      Neurology Seminar in HAMAMATSU
    • Related Report
      2019 Research-status Report
    • Invited
  • [Presentation] iPS細胞を用いた脳神経疾患研究2019

    • Author(s)
      井上治久
    • Organizer
      第18回岐阜脳神経研究会
    • Related Report
      2019 Research-status Report
    • Invited
  • [Presentation] 幹細胞を用いた神経疾患研究2019

    • Author(s)
      井上治久
    • Organizer
      田辺三菱製薬,神経科学創薬セミナー
    • Related Report
      2019 Research-status Report
    • Invited
  • [Presentation] 研究のお話ー受験をされる方へー2019

    • Author(s)
      井上治久
    • Organizer
      駿台予備学校大阪南校 2019全国国公立大学医学部医学科説明会 特別講演
    • Related Report
      2019 Research-status Report
    • Invited
  • [Presentation] iPS細胞を用いた脳神経疾患の研究2019

    • Author(s)
      井上治久
    • Organizer
      シンポジウムⅠ, 第53回日本てんかん学会学術集会
    • Related Report
      2019 Research-status Report
    • Invited
  • [Presentation] iPS細胞を用いたALSの治療薬研究開発2019

    • Author(s)
      井上治久
    • Organizer
      島根県難病フォーラム in 松江
    • Related Report
      2019 Research-status Report
    • Invited
  • [Presentation] Basic and translational neuroscience using patient iPSCs,BDR-CiRA Exchange Seminar2019

    • Author(s)
      井上治久
    • Organizer
      理化学研究所生命機能科学研究センター
    • Related Report
      2019 Research-status Report
    • Invited
  • [Presentation] Modeling astrocyte-related diseases using patient iPSCs, Symposium:“Glial Cell Research in Neuronal Regeneration and Neurodegenerative Diseases”2019

    • Author(s)
      井上治久
    • Organizer
      第24回グリア研究会
    • Related Report
      2019 Research-status Report
    • Invited
  • [Presentation] iPS創薬の取り組み アカデミアの立場から2019

    • Author(s)
      井上治久
    • Organizer
      シンポジウム2:iPS創薬, 神戸ポートアイランド創薬フォーラム(第29回)、神戸再生医療勉強会(2019年度 第4回)共同開催企画 講 演会
    • Related Report
      2019 Research-status Report
    • Invited
  • [Book] Medical Applications of iPS Cells: Innovation in Medical Sciences (Current Human Cell Research and Applications)2019

    • Author(s)
      Haruhisa Inoue, Yukio Nakamura (Editors)
    • Total Pages
      190
    • Publisher
      Springer
    • Related Report
      2019 Research-status Report

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Published: 2018-07-25   Modified: 2022-12-28  

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