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Structure characterization of beta-Amyloid oligomer in protein cage

Research Project

Project/Area Number 18K19143
Research Category

Grant-in-Aid for Challenging Research (Exploratory)

Allocation TypeMulti-year Fund
Review Section Medium-sized Section 37:Biomolecular chemistry and related fields
Research InstitutionTokyo Institute of Technology

Principal Investigator

Unoe Takafumi  東京工業大学, 生命理工学院, 教授 (70332179)

Project Period (FY) 2018-06-29 – 2020-03-31
Project Status Completed (Fiscal Year 2019)
Budget Amount *help
¥6,240,000 (Direct Cost: ¥4,800,000、Indirect Cost: ¥1,440,000)
Fiscal Year 2019: ¥2,860,000 (Direct Cost: ¥2,200,000、Indirect Cost: ¥660,000)
Fiscal Year 2018: ¥3,380,000 (Direct Cost: ¥2,600,000、Indirect Cost: ¥780,000)
Keywordsベータアミロイド / タンパク質工学 / タンパク質ケージ / フェリチン / アミロイド / 超分子集合体 / 自己集合
Outline of Final Research Achievements

The formation process of amyloid fibers holds the key to the onset of Alzheimer's disease. It has been reported that Ab oligomers consisting of a small number of amyloid-beta peptide monomers (Ab) have higher toxicity than Ab fiber. In this study, we established a method for isolating an Ab-oligomer by using encapsulation in a protein cage.

Academic Significance and Societal Importance of the Research Achievements

アルツハイマー病やパーキンソン病の克服は高齢化問題の重要な解決策となることから、ベータアミロイドに加え、それらの原因となるαシヌクレイン、タウ蛋白質の凝集過程の研究は盛んに進められている。特に、凝集体の高分解能構造決定は機構解明には不可欠であるが、高い凝集性を有するサンプルの調製は困難である。本研究のオリゴマーの単離・精製と結晶化に蛋白質ケージ機能化を利用する全く新しい発想に基づく手法は、ウイルス等のサイズや形状の異なる蛋白質ケージに展開することによって、様々なターゲット蛋白質に適用できるばかりでなく、単一蛋白質の内包等にも発展する。

Report

(3 results)
  • 2019 Annual Research Report   Final Research Report ( PDF )
  • 2018 Research-status Report
  • Research Products

    (67 results)

All 2020 2019 2018 Other

All Int'l Joint Research (6 results) Journal Article (14 results) (of which Int'l Joint Research: 6 results,  Peer Reviewed: 13 results,  Open Access: 2 results) Presentation (38 results) (of which Int'l Joint Research: 19 results,  Invited: 17 results) Book (6 results) Remarks (2 results) Patent(Industrial Property Rights) (1 results)

  • [Int'l Joint Research] 清華大学(中国)

    • Related Report
      2019 Annual Research Report
  • [Int'l Joint Research] マサチューセッツ工科大学(米国)

    • Related Report
      2019 Annual Research Report
  • [Int'l Joint Research] TATA基礎科学研究所(インド)

    • Related Report
      2019 Annual Research Report
  • [Int'l Joint Research] 清華大学(中国)

    • Related Report
      2018 Research-status Report
  • [Int'l Joint Research] KAIST(韓国)

    • Related Report
      2018 Research-status Report
  • [Int'l Joint Research] NTU(シンガポール)

    • Related Report
      2018 Research-status Report
  • [Journal Article] Design of Multinuclear Gold Binding Site at the Two-fold Symmetric Interface of the Ferritin Cage.2020

    • Author(s)
      Yuki Hishikawa,Basudev Maity,Nozomi Ito,Satoshi Abe,Diannan Lu,Takafumi Ueno.
    • Journal Title

      Chemistry Letters

      Volume: 49 Issue: 7 Pages: 840-844

    • DOI

      10.1246/cl.200217

    • NAID

      130007872571

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Dynamic behavior of an artificial protein needle contacting a membrane observed by high-speed atomic force microscopy2020

    • Author(s)
      Ueno Takafumi、Niwase Kento、Tsubokawa Daisho、Kikuchi Kosuke、Takai Natsumi、Furuta Tadaomi、Kawano Ryuji、Uchihashi Takayuki
    • Journal Title

      Nanoscale

      Volume: in press Issue: 15 Pages: 8166-8173

    • DOI

      10.1039/d0nr01121e

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Site-Selective Protein Chemical Modification of Exposed Tyrosine Residues Using Tyrosine Click Reaction2020

    • Author(s)
      Sato Shinichi、Matsumura Masaki、Kadonosono Tetsuya、Abe Satoshi、Ueno Takafumi、Ueda Hiroshi、Nakamura Hiroyuki
    • Journal Title

      Bioconjugate Chemistry

      Volume: in press Issue: 5 Pages: 1417-1424

    • DOI

      10.1021/acs.bioconjchem.0c00120

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Coordination design of cadmium ions at the 4-fold axis channel of the apo-ferritin cage2019

    • Author(s)
      Abe Satoshi、Ito Nozomi、Maity Basudev、Lu Chenlin、Lu Diannan、Ueno Takafumi
    • Journal Title

      Dalton Transactions

      Volume: 印刷中 Issue: 26 Pages: 9759-9764

    • DOI

      10.1039/c9dt00609e

    • Related Report
      2019 Annual Research Report 2018 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Recent progresses in the accumulation of metal ions into the apo-ferritin cage: Experimental and theoretical perspectives2019

    • Author(s)
      Maity Basudev、Hishikawa Yuki、Lu Diannan、Ueno Takafumi
    • Journal Title

      Polyhedron

      Volume: 印刷中 Pages: 104-111

    • DOI

      10.1016/j.poly.2019.03.048

    • Related Report
      2019 Annual Research Report 2018 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Engineering of protein crystals for development of bionanomaterials2019

    • Author(s)
      Khanh Nguyen Tien、Toan Pham Thuc、Ueno Takafumi
    • Journal Title

      Japanese Journal of Applied Physics

      Volume: 58 Issue: SI Pages: SI0802-SI0802

    • DOI

      10.7567/1347-4065/ab1399

    • NAID

      210000156508

    • Related Report
      2019 Annual Research Report
  • [Journal Article] Encapsulation of biomacromolecules by soaking and co-crystallization into porous protein crystals of hemocyanin2019

    • Author(s)
      Tsubasa Hashimoto, Yuxin Ye, Asuka Matsuno, Yuki Ohnishi, Akira Kitamura, Masataka Kinjo, Satoshi Abe, Takafumi Uenod, Min Yao, Tomohisa Ogawa, Takashi Matsuia, Yoshikazu Tanaka
    • Journal Title

      Biochemical and Biophysical Research Communications

      Volume: 509 Issue: 2 Pages: 577-584

    • DOI

      10.1016/j.bbrc.2018.12.096

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Construction of supramolecular nanotubes from protein crystals2019

    • Author(s)
      Nguyen Tien Khanh、Negishi Hashiru、Abe Satoshi、Ueno Takafumi
    • Journal Title

      Chemical Science

      Volume: 10 Issue: 4 Pages: 1046-1051

    • DOI

      10.1039/c8sc04167a

    • Related Report
      2018 Research-status Report
    • Peer Reviewed
  • [Journal Article] Engineering of protein crystals for development of bionanomaterials2019

    • Author(s)
      T. K. Nguyen, T. T. Pham, and T Ueno
    • Journal Title

      Jpn. J. Appl. Phys.

      Volume: 印刷中

    • NAID

      210000156508

    • Related Report
      2018 Research-status Report
    • Peer Reviewed
  • [Journal Article] Photoinduced in Vivo Magnetic Resonance Imaging (MRI) with Rapid CO Release from an MnCO-Protein Needle Composite2018

    • Author(s)
      Hyodo Fuminori、Sho Takeya、Maity Basudev、Fujita Kenta、Tachibana Yoko、Akashi Satoko、Mano Megumi、Hishikawa Yuki、Matsuo Masayuki、Ueno Takafumi
    • Journal Title

      Chemistry - A European Journal

      Volume: 24 Issue: 45 Pages: 11578-11583

    • DOI

      10.1002/chem.201802445

    • Related Report
      2018 Research-status Report
    • Peer Reviewed
  • [Journal Article] Raman spectroscopy insight into Norovirus encapsulation in Bombyx mori cypovirus cubic microcrystals2018

    • Author(s)
      Mori Hajime、Oda Naoki、Abe Satoshi、Ueno Takafumi、Zhu Wenliang、Pernstich Chris、Pezzotti Giuseppe
    • Journal Title

      Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy

      Volume: 203 Pages: 19-30

    • DOI

      10.1016/j.saa.2018.05.066

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Supramolecular protein cages constructed from a crystalline protein matrix2018

    • Author(s)
      Negishi Hashiru、Abe Satoshi、Yamashita Keitaro、Hirata Kunio、Niwase Kento、Boudes Marion、Coulibaly Fasseli、Mori Hajime、Ueno Takafumi
    • Journal Title

      Chemical Communications

      Volume: 54 Issue: 16 Pages: 1988-1991

    • DOI

      10.1039/c7cc08689j

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Photocatalytic hydrogen evolution systems constructed in cross-linked porous protein crystals2018

    • Author(s)
      Tabe Hiroyasu、Takahashi Hikaru、Shimoi Takuya、Abe Satoshi、Ueno Takafumi、Yamada Yusuke
    • Journal Title

      Applied Catalysis B: Environmental

      Volume: 237 Pages: 1124-1129

    • DOI

      10.1016/j.apcatb.2018.01.046

    • URL

      https://ocu-omu.repo.nii.ac.jp/records/2019618

    • Related Report
      2018 Research-status Report
    • Peer Reviewed
  • [Journal Article] Functionalization of protein crystals with metal ions, complexes and nanoparticles2018

    • Author(s)
      Abe Satoshi、Maity Basudev、Ueno Takafumi
    • Journal Title

      Current Opinion in Chemical Biology

      Volume: 43 Pages: 68-76

    • DOI

      10.1016/j.cbpa.2017.11.015

    • Related Report
      2018 Research-status Report
    • Peer Reviewed
  • [Presentation] Construction of Fibril Protein Assembly From Protein Crystals2020

    • Author(s)
      Thuc Toan PHAM,Satoshi Abe,Hashiru Negishi,Takafumi Ueno
    • Organizer
      The 100th CSJ Annual Meeting
    • Related Report
      2019 Annual Research Report
  • [Presentation] ミニタンパク質融合多角体タンパク質の細胞内結晶化2020

    • Author(s)
      小島摩利子,安部聡,上野隆史
    • Organizer
      日本化学会第100春季年会
    • Related Report
      2019 Annual Research Report
  • [Presentation] Design of the Two-dimensional Protein Assembly Patterns by Modifying the Tip of β-helical Protein Needle2020

    • Author(s)
      Kosuke Kikuchi,Takafumi Ueno
    • Organizer
      The 100th CSJ Annual Meeting
    • Related Report
      2019 Annual Research Report
  • [Presentation] タンパク質の迅速構造解析を目指した多角体の結晶化設計2020

    • Author(s)
      安部 聡,小島摩利子,小暮遼河,上野隆史
    • Organizer
      日本化学会 第100春季年会(2020)
    • Related Report
      2019 Annual Research Report
  • [Presentation] 細胞内結晶化の最適化2020

    • Author(s)
      小暮遼河,安部 聡,上野隆史
    • Organizer
      日本化学会 第100春季年会(2020)
    • Related Report
      2019 Annual Research Report
  • [Presentation] Disassembly reaction of the ferritin cage observed by high-speed AFM2020

    • Author(s)
      MAITY Basudev,Zhipeng LI,Kento NIWASE,Diannan LU,Takafumi UENO,Takafumi
    • Organizer
      The 100th Annual Meeting 2020 of CSJ
    • Related Report
      2019 Annual Research Report
  • [Presentation] Artifical enzymes Artifical enzymes using protein assemblies2020

    • Author(s)
      Takafumi Ueno
    • Organizer
      8th ELSI SYMPOSIUM EXTENDING VIEWS OF CATALYSIS
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 外来タンパク質固定化のための細胞内タンパク質結晶の空間設計2019

    • Author(s)
      安部 聡,上野隆史
    • Organizer
      日本結晶学会令和元年(2019年度)年会
    • Related Report
      2019 Annual Research Report
  • [Presentation] 高速原子間力顕微鏡による針状タンパク質の集合体構造の解析2019

    • Author(s)
      菊池幸祐,上野隆史
    • Organizer
      第9回CSJ化学フェスタ2019
    • Related Report
      2019 Annual Research Report
  • [Presentation] Engineering of Protein Assembly? for Coordination Chemistry2019

    • Author(s)
      Takafumi Ueno
    • Organizer
      12th CJJSMCC 2019
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] アミロイドβ融合蛋白質ケージの設計とその動的挙動解析2019

    • Author(s)
      亀山志織,MAITYBASUDEV,安部聡,上野隆史
    • Organizer
      第9回CSJ化学フェスタ
    • Related Report
      2019 Annual Research Report
  • [Presentation] 多角体タンパク質の結晶化設計2019

    • Author(s)
      安部 聡,小島摩利子,上野隆史
    • Organizer
      第13回バイオ関連化学シンポジウム
    • Related Report
      2019 Annual Research Report
  • [Presentation] 原子、分子そして生命へ2019

    • Author(s)
      上野隆史
    • Organizer
      錯体化学会第69回討論会
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] ミニタンパク質融合多角体タンパク質の結晶設計2019

    • Author(s)
      小島摩利子,安部聡,上野隆史
    • Organizer
      第13回バイオ関連化学シンポジウム
    • Related Report
      2019 Annual Research Report
  • [Presentation] 高速原子間力顕微鏡による針状タンパク質の集合体観察2019

    • Author(s)
      菊池幸祐,上野隆史
    • Organizer
      第68回高分子討論会
    • Related Report
      2019 Annual Research Report
  • [Presentation] アミロイドβオリゴマー形成機序の解明に向けた融合蛋白質ケージの設計2019

    • Author(s)
      亀山志織,MAITYBASUDEV,安部聡,上野隆史
    • Organizer
      第13回バイオ関連化学シンポジウム
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 球状タンパク質フェリチンを用いたアミロイドβオリゴマーの動的挙動追跡2019

    • Author(s)
      亀山志織,MAITYBASUDEV,安部聡,上野隆史
    • Organizer
      第68回高分子討論会
    • Related Report
      2019 Annual Research Report
  • [Presentation] Construction of Supramolecular Structures from Protein Crystals2019

    • Author(s)
      Takafumi Ueno
    • Organizer
      10th International Conference on Materials for Advanced Technologies
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Construction of Protein Needle with Cargo Protein from Norovirus2019

    • Author(s)
      Que Dan NGUYEN,Kazuhiko Katayama,Takafumi Ueno
    • Organizer
      10th International Conference on Materials for Advanced Technologies
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Assembly Formation of Needle-Like Protein from Bacteriophage T4 Observed by High Speed Atomic Force Microscopy2019

    • Author(s)
      Kosuke Kikuchi,Kento Niwase,Takafumi Ueno
    • Organizer
      10th International Conference on Materials for Advanced Technologies
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research
  • [Presentation] In Cell Protein Crystals Containing Organometallic Complexes2019

    • Author(s)
      Satoshi Abe,Takafumi Ueno
    • Organizer
      15th International Symposium on Applied Bioinorganic Chemistry
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Creation of functional materials using in vivo protein crystals2019

    • Author(s)
      Satoshi Abe,Makoto Kasamatsu,Takafumi Ueno
    • Organizer
      第68回高分子年次大会
    • Related Report
      2019 Annual Research Report
  • [Presentation] In vivo crystallization of polyhedra protein fused with metal binding peptide”2019

    • Author(s)
      Mariko Kojima,Satoshi Abe,Takafumi Ueno
    • Organizer
      第68回高分子学会年次大会
    • Related Report
      2019 Annual Research Report
  • [Presentation] Protein Crystal Engineering for Coordination Chemistry2019

    • Author(s)
      Takafumi Ueno
    • Organizer
      China-Japan Symposium of Functional Coordination Chemistry
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] In cell design of protein assembly materials2019

    • Author(s)
      Takafumi Ueno
    • Organizer
      Japan-BIOCEV conference
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Solid-biocatalysts constructed from immobilized enzymes within in vivo protein crystals2019

    • Author(s)
      Tien Khanh Nguyen,Satoshi Abe,Takafumi Ueno
    • Organizer
      13th Biofunctioned conference
    • Related Report
      2019 Annual Research Report
  • [Presentation] Solid biocatalysts designed from in vivo protein crystals2019

    • Author(s)
      Tien Khanh Nguyen,Satoshi Abe,Takafumi Ueno
    • Organizer
      68th Symposium on Macromolecules
    • Related Report
      2019 Annual Research Report
  • [Presentation] タンパク質結晶工学による新機能材料2019

    • Author(s)
      上野隆史
    • Organizer
      第28回ポリマー材料フォーラム
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] Protein crystals for designing biosupramolecular materials2019

    • Author(s)
      Takafumi Ueno
    • Organizer
      Tokyo Tech NCCR Molecular Systems Engineering Joint Symposium, Basel,
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] Bioinorganic Design of Protein Assembly2019

    • Author(s)
      Takafumi Ueno
    • Organizer
      2019 KAIST School of Molecular Science BK21 Workshop
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] Metal Coordination Functions Designed in Protein Cage2018

    • Author(s)
      Takafumi Ueno
    • Organizer
      3rd Japan-UK Joint Symposium on Coordination Chemistry
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] Metal Coordination and Function Designed in Protein Assembly2018

    • Author(s)
      Takafumi Ueno
    • Organizer
      2018 Korea-Taiwan-Japan Bioinorganic Chemistry Symposium
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] Functional Design of Protein Cage for Sustainable Bionanomaterial2018

    • Author(s)
      Takafumi Ueno
    • Organizer
      ASPIRE League forum
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] Functions designed in Crystalline Protein Assembly?2018

    • Author(s)
      Takafumi Ueno
    • Organizer
      JST Fujita ACCEL International Symposium Coordination Chemistry for Structural Elucidation ICCC2018?
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] Dynamic Process of Proteins Observed in Crystalline Cages2018

    • Author(s)
      Takafumi Ueno
    • Organizer
      The 79th Okazaki Conference Synthetic, Biological, and Hybrid Molecular Engines
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] Dynamic Function of Crystalline Protein Assembly2018

    • Author(s)
      Takafumi Ueno
    • Organizer
      ACSIN-14 & ICSPM26, Nanobiology
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] Artificial metalloproteins constructed with protein assemblies for bioinorganic materials2018

    • Author(s)
      Takafumi Ueno
    • Organizer
      The 18th Japan-Korea Joint Symposium on Organometallic and Coordination Chemistry
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] Artificial metalloproteins constructed with protein assemblies for bionano applications2018

    • Author(s)
      Takafumi Ueno
    • Organizer
      The 9th Asian Biological Inorganic Conference
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research / Invited
  • [Book] 機能性高分子金属錯体2020

    • Author(s)
      安部 聡、上野隆史
    • Publisher
      三共出版
    • Related Report
      2019 Annual Research Report
  • [Book] 光エネルギー変換における分子触媒の新展開2020

    • Author(s)
      安部 聡、上野隆史
    • Publisher
      化学同人
    • Related Report
      2019 Annual Research Report
  • [Book] 光エネルギー変換における分子触媒の新展開2019

    • Author(s)
      安部 聡、上野隆史
    • Publisher
      化学同人
    • Related Report
      2018 Research-status Report
  • [Book] 機能性高分子金属錯体2019

    • Author(s)
      安部 聡、上野隆史
    • Publisher
      三共出版
    • Related Report
      2018 Research-status Report
  • [Book] Advances in Bioorganometallic Chemistry2018

    • Author(s)
      B. Maity, S. Abe, T. Ueno
    • Total Pages
      472
    • Publisher
      Wiley
    • ISBN
      9780128141977
    • Related Report
      2018 Research-status Report
  • [Book] 生命機能に迫る分子化学2018

    • Author(s)
      上野隆史
    • Total Pages
      204
    • Publisher
      化学同人
    • Related Report
      2018 Research-status Report
  • [Remarks] Ueno Lab

    • URL

      http://www.ueno.bio.titech.ac.jp/

    • Related Report
      2019 Annual Research Report
  • [Remarks] Ueno Lab

    • URL

      http://www.ueno.bio.titech.ac.jp/index.html

    • Related Report
      2018 Research-status Report
  • [Patent(Industrial Property Rights)] 融合タンパク質及びその使用2018

    • Inventor(s)
      上野隆史、亀山詩織
    • Industrial Property Rights Holder
      上野隆史、亀山詩織
    • Industrial Property Rights Type
      特許
    • Industrial Property Number
      2018-088420
    • Filing Date
      2018
    • Related Report
      2018 Research-status Report

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Published: 2018-07-25   Modified: 2021-02-19  

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