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Structural ensembles of sensor proteins regulated by food components.

Research Project

Project/Area Number 18K19161
Research Category

Grant-in-Aid for Challenging Research (Exploratory)

Allocation TypeMulti-year Fund
Review Section Medium-sized Section 38:Agricultural chemistry and related fields
Research InstitutionTohoku University

Principal Investigator

Kurokawa Hirofumi  東北大学, 多元物質科学研究所, 講師 (80359546)

Project Period (FY) 2018-06-29 – 2022-03-31
Project Status Completed (Fiscal Year 2021)
Budget Amount *help
¥6,370,000 (Direct Cost: ¥4,900,000、Indirect Cost: ¥1,470,000)
Fiscal Year 2020: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Fiscal Year 2019: ¥2,210,000 (Direct Cost: ¥1,700,000、Indirect Cost: ¥510,000)
Fiscal Year 2018: ¥2,210,000 (Direct Cost: ¥1,700,000、Indirect Cost: ¥510,000)
Keywordsタンパク質 / 結晶構造 / X線結晶構造解析 / センサー / 酸化ストレス / 分子センサー
Outline of Final Research Achievements

This study aims to elucidate molecular recognition by "ensemble structure," which cannot be explained by the conventional lock and key model. We first attempted to trap metastable states by forming a complex between an oxidative stress sensor and the organic compound, but we found that cis-prenyltransferase was useful as another model system and determined its X-ray structure. Since it was difficult to obtain the stress sensor crystals of suitable size for X-ray diffraction experiments, we turned our attention to microcrystal electron diffraction using cryo-electron microscopy, which is capable of analyzing even microcrystals. The structural analysis of small molecule samples was first performed by using the molecular replacement method. Since the cryo-EM was installed in our department recently, we have established the basis for future analyses.

Academic Significance and Societal Importance of the Research Achievements

cis型プレニル転移酵素の結晶解析から低分子の結合によるタンパク質のダイナミックな構造変化を高分解能で明らかとした.このような成功例がある一方,柔軟なセンサータンパク質はX線解析が可能なサイズの大きな結晶を得ることが困難である.微結晶でも解析が可能なクライオ電子顕微鏡を用いた解析が必須と判断し,関連する共同研究を実施した.本研究はセンサータンパク質の分子認識を解明する上で鍵となる微小結晶解析に向けた基礎を築いたといえる.

Report

(5 results)
  • 2021 Annual Research Report   Final Research Report ( PDF )
  • 2020 Research-status Report
  • 2019 Research-status Report
  • 2018 Research-status Report
  • Research Products

    (4 results)

All 2022 2020 2019 2018

All Journal Article (1 results) (of which Peer Reviewed: 1 results) Presentation (3 results)

  • [Journal Article] Crystal structure of Thermobifida fusca cis-prenyltransferase reveals the dynamic nature of its RXG motif-mediated inter-subunit interactions critical for its catalytic activity2020

    • Author(s)
      Kurokawa Hirofumi、Ambo Takanori、Takahashi Seiji、Koyama Tanetoshi
    • Journal Title

      Biochemical and Biophysical Research Communications

      Volume: 532 Issue: 3 Pages: 459-465

    • DOI

      10.1016/j.bbrc.2020.08.062

    • Related Report
      2020 Research-status Report
    • Peer Reviewed
  • [Presentation] Ph-BTBTT-Cn系有機半導体の分子構造異性による結晶構造の転換2022

    • Author(s)
      東野 寿樹, 井上 悟, 荒井 俊人, 松井弘之, 都築誠二, 高場圭章, 眞木 さおり, 黒河 博文, 米倉 功治, 長谷川 達生
    • Organizer
      応用物理学会春季学術講演会
    • Related Report
      2021 Annual Research Report
  • [Presentation] cis型プレニル基転移酵素の構造ダイナミクス2019

    • Author(s)
      黒河博文
    • Organizer
      第29回イソプレノイド研究会例会
    • Related Report
      2019 Research-status Report
  • [Presentation] 結晶構造解析によるcis型プレニル基転移酵素のダイナミクスと活性制御2018

    • Author(s)
      黒河博文、安保貴永、古山種俊
    • Organizer
      第28回イソプレノイド研究会例会
    • Related Report
      2018 Research-status Report

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Published: 2018-07-25   Modified: 2023-01-30  

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