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Study of virus-mediated and viroid-mediated silencing of host plant genes

Research Project

Project/Area Number 18K19219
Research Category

Grant-in-Aid for Challenging Research (Exploratory)

Allocation TypeMulti-year Fund
Review Section Medium-sized Section 39:Agricultural and environmental biology and related fields
Research InstitutionRitsumeikan University

Principal Investigator

Takeda Atsushi  立命館大学, 生命科学部, 教授 (60560779)

Co-Investigator(Kenkyū-buntansha) 佐藤 昌直  北海道大学, 農学研究院, 助教 (20517693)
Project Period (FY) 2018-06-29 – 2021-03-31
Project Status Completed (Fiscal Year 2020)
Budget Amount *help
¥6,370,000 (Direct Cost: ¥4,900,000、Indirect Cost: ¥1,470,000)
Fiscal Year 2020: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Fiscal Year 2019: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Fiscal Year 2018: ¥2,470,000 (Direct Cost: ¥1,900,000、Indirect Cost: ¥570,000)
Keywords植物ウイルス / ウイロイド / siRNA / AGO / 遺伝子発現抑制
Outline of Final Research Achievements

To date, it is unclear how AGO1 and AGO2 determine the target mRNAs to be degraded in plants. To predict the target host mRNAs of AGO1-virus-derived siRNAs (vsiRNAs) and AGO2-vsiRNAs more precisely, I analyzed target specificities of AGO1-miRNA and AGO2-miRNA in plants. In case of AGO1-mediated silencing, I tested effects of G:U wobbles between miRNA and mRNAs. Results of a series of transient assay showed that G:U wobble has an intermediate effect between the base paring and the mismatch in a position-dependent manner. In case of AGO2-mediated silencing, I established a transient system to test the requirement of complementarities between miRNA and mRNAs by using a newly generated ago triple mutant of Nicotiana banthamiana. This system allows us to analyze mechanisms of the AGO2 specificity in plants. These basic analyses will help establish algorisms to predict host mRNAs targeted by AGO1-vsiRNAs and AGO2-vsiRNAs in future.

Academic Significance and Societal Importance of the Research Achievements

これまでに、G:U wobbleに着目して植物のAGO1の標的mRNA特異性への影響を研究した例はほぼ無く、植物のAGO2の標的特異性を正確に検証可能な系も確立されていなかった。今回得られた成果によって、植物ウイルスやウイロイドの病原性を研究する際に、AGO1やAGO2を介して分解される宿主mRNAを予測可能にするための基盤が確立された。今回得られた成果は、学術的に植物病理学上意義深いだけでなく、将来の植物ウイルス病・ウイロイド病の防除や、ウイルス・ウイロイド抵抗性品種の開発に貢献する可能性を秘めている。

Report

(4 results)
  • 2020 Annual Research Report   Final Research Report ( PDF )
  • 2019 Research-status Report
  • 2018 Research-status Report
  • Research Products

    (14 results)

All 2021 2020 2019 2018

All Journal Article (3 results) (of which Int'l Joint Research: 1 results,  Peer Reviewed: 1 results,  Open Access: 1 results) Presentation (11 results) (of which Int'l Joint Research: 2 results)

  • [Journal Article] A versatile Tn7 transposon-based bioluminescence tagging tool for quantitative and spatial detection of bacteria in plants2021

    • Author(s)
      Matsumoto Ayumi、Schluter Titus、Melkonian Katharina、Takeda Atsushi、Nakagami Hirofumi、Mine Akira
    • Journal Title

      bioRxiv

      Volume: -

    • DOI

      10.1101/2021.02.11.430857

    • Related Report
      2020 Annual Research Report
    • Int'l Joint Research
  • [Journal Article] Ribosome stalling caused by the Argonaute-miRNA-SGS3 complex regulates production of secondary siRNA biogenesis in plants2020

    • Author(s)
      Iwakawa Hiro-oki、Lam Andy Y.W.、Mine Akira、Fujita Tomoya、Kiyokawa Kaori、Yoshikawa Manabu、Takeda Atsushi、Iwasaki Shintaro、Tomari Yukihide
    • Journal Title

      bioRxiv

      Volume: -

    • DOI

      10.1101/2020.09.10.288902

    • Related Report
      2020 Annual Research Report
  • [Journal Article] AtNOT1 Is a Novel Regulator of Gene Expression during Pollen Development2019

    • Author(s)
      Motomura Kazuki、Arae Toshihiro、Araki-Uramoto Haruka、Suzuki Yuya、Takeuchi Hidenori、Suzuki Takamasa、Ichihashi Yasunori、Shibata Arisa、Shirasu Ken、Takeda Atsushi、Higashiyama Tetsuya、Chiba Yukako
    • Journal Title

      Plant and Cell Physiology

      Volume: 61 Issue: 4 Pages: 712-721

    • DOI

      10.1093/pcp/pcz235

    • Related Report
      2019 Research-status Report
    • Peer Reviewed / Open Access
  • [Presentation] アグロバクテリウム感染による転写および転写後遺伝子サイレンシングの誘導2021

    • Author(s)
      飯田 笑美, 澤野 光, 栗山 和典, 田原 緑, 竹田 篤史, 森山 裕充, 福原 敏行
    • Organizer
      第62回日本植物生理学会
    • Related Report
      2020 Annual Research Report
  • [Presentation] CRISPR/Cas9 ゲノム編集による BBF 遺伝子ノックアウトタバコの作製2020

    • Author(s)
      鈴木 大河, 鈴木 新, 佐野 彩葉, 竹田 篤史, 丹生谷 博, 松下 保彦, 佐々木 信光
    • Organizer
      令和二年度日本植物病理学会関東部会
    • Related Report
      2020 Annual Research Report
  • [Presentation] Tn7トランスポゾンを介したluxCDABEオペロンのゲノム挿入によるPseudomonas syringaeの植物内増殖の定量と可視化2020

    • Author(s)
      峯 彰, 松本 歩, Titus Schluter, Katharina Melkonian, 中神 弘史, 竹田 篤史
    • Organizer
      令和二年度日本植物病理学会関西部会
    • Related Report
      2020 Annual Research Report
  • [Presentation] Analysis of target mRNA specificity of AGO2-miR390 in plants2019

    • Author(s)
      Yurina Naito, Hirokazu Hori, Akira Mine and Atsushi Takeda
    • Organizer
      UIUC Plant Science Symposium
    • Related Report
      2019 Research-status Report
    • Int'l Joint Research
  • [Presentation] RCNMV複製とAGO2発現誘導の関係についての研究2019

    • Author(s)
      上四元 晴香,峯 彰,海道 真典,竹田 篤史
    • Organizer
      日本植物学会第83回大会
    • Related Report
      2019 Research-status Report
  • [Presentation] Temporal transcriptome profiling reveals distinct gene expression signatures associated with suppression of plant immunity by high temperature and high humidity2019

    • Author(s)
      Akira Mine, Ayumi Matsumoto and Atsushi Takeda
    • Organizer
      IS-MPMI XVIII congress
    • Related Report
      2019 Research-status Report
    • Int'l Joint Research
  • [Presentation] 免疫活性化に伴って発現誘導される花粉発生に必要なlong noncoding RNA2019

    • Author(s)
      下川 心平, 元村 一基, 津田 賢一, 竹田 篤史, 峯 彰
    • Organizer
      令和元年度日本植物病理学会関西支部会
    • Related Report
      2019 Research-status Report
  • [Presentation] 生物発光によるグラム陰性細菌の増殖定量を可能にする汎用性プラスミドベクター2019

    • Author(s)
      峯彰、松本歩、下川心平、竹田篤史
    • Organizer
      平成31年度日本植物病理学会大会
    • Related Report
      2018 Research-status Report
  • [Presentation] ゲノム編集技術によるBBF2およびBBF3遺伝子ノックアウトタバコの作出2018

    • Author(s)
      鈴木新、井手口真也、竹田篤史、丹生谷博、松下保彦、佐々木信光
    • Organizer
      第41回日本分子生物学会年会
    • Related Report
      2018 Research-status Report
  • [Presentation] ウイルス感染時におけるAGO1-vsiRNAの標的となる植物mRNAの予測2018

    • Author(s)
      堀裕和、岩橋美穂、白谷公孝、佐藤昌直、峯彰、竹田篤史
    • Organizer
      第41回日本分子生物学会年会
    • Related Report
      2018 Research-status Report
  • [Presentation] カリモウイルス科のウイルス由来Fltプロモーターを利用した同時過剰発現系の構築2018

    • Author(s)
      宮﨑光洋、竹内信弘、峯彰、竹田篤史
    • Organizer
      第41回日本分子生物学会年会
    • Related Report
      2018 Research-status Report

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Published: 2018-07-25   Modified: 2022-01-27  

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