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Improvement of genome-editing technologies by engineering of CRISPR-Cas9

Research Project

Project/Area Number 18K19284
Research Category

Grant-in-Aid for Challenging Research (Exploratory)

Allocation TypeMulti-year Fund
Review Section Medium-sized Section 43:Biology at molecular to cellular levels, and related fields
Research InstitutionThe University of Tokyo

Principal Investigator

Nishimasu Hiroshi  東京大学, 先端科学技術研究センター, 教授 (00467044)

Project Period (FY) 2018-06-29 – 2022-03-31
Project Status Completed (Fiscal Year 2021)
Budget Amount *help
¥6,370,000 (Direct Cost: ¥4,900,000、Indirect Cost: ¥1,470,000)
Fiscal Year 2019: ¥2,860,000 (Direct Cost: ¥2,200,000、Indirect Cost: ¥660,000)
Fiscal Year 2018: ¥3,510,000 (Direct Cost: ¥2,700,000、Indirect Cost: ¥810,000)
KeywordsCRISPR / CRISPR-Cas9
Outline of Final Research Achievements

Cas9 is an RNA-guided DNA nuclease derived from prokaryotic CRISPR-Cas adaptive immune systems, and associates with a guide RNA to cleave double-stranded DNA targets. Therefore, Cas9 is widely used as a powerful genome-editing tool. In this study, we determined the 3D structures of Cas9 and Cas12f, which provide mechanistic insights into their RNA-guide DNA cleavage. Based on the structural information, we further engineered Cas9 variants with improved functionality, thereby extending the utility of CRISPR-based genome engineering technologies.

Academic Significance and Societal Importance of the Research Achievements

本研究では、小型Cas9の結晶構造および小型Cas12fのクライオ電子顕微鏡構造を決定した。これらの立体構造から、CRISPR-Cas酵素の多様なRNA認識機構、DNA認識機構、DNA切断機構が原子レベルで明らかになった。さらに、得られた構造情報を利用し、標的範囲の拡張したCas9改変体の開発にも成功した。これらの成果は、ゲノム編集技術の高度化に貢献するものである。

Report

(5 results)
  • 2021 Annual Research Report   Final Research Report ( PDF )
  • 2020 Research-status Report
  • 2019 Research-status Report
  • 2018 Research-status Report
  • Research Products

    (7 results)

All 2022 2021 2020 2019 Other

All Int'l Joint Research (1 results) Journal Article (4 results) (of which Int'l Joint Research: 2 results,  Peer Reviewed: 4 results,  Open Access: 2 results) Presentation (2 results) (of which Invited: 2 results)

  • [Int'l Joint Research] Broad Institute(米国)

    • Related Report
      2019 Research-status Report
  • [Journal Article] Engineered Campylobacter jejuni Cas9 variant with enhanced activity and broader targeting range2022

    • Author(s)
      Nakagawa Ryoya、Ishiguro Soh、Okazaki Sae、Mori Hideto、Tanaka Mamoru、Aburatani Hiroyuki、Yachie Nozomu、Nishimasu Hiroshi、Nureki Osamu
    • Journal Title

      Communications Biology

      Volume: 5 Issue: 1 Pages: 1-8

    • DOI

      10.1038/s42003-022-03149-7

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Structure of the miniature type V-F CRISPR-Cas effector enzyme2021

    • Author(s)
      Takeda Satoru N.、Nakagawa Ryoya、Okazaki Sae、Hirano Hisato、Kobayashi Kan、Kusakizako Tsukasa、Nishizawa Tomohiro、Yamashita Keitaro、Nishimasu Hiroshi、Nureki Osamu
    • Journal Title

      Molecular Cell

      Volume: 81 Issue: 3 Pages: 558-570.e3

    • DOI

      10.1016/j.molcel.2020.11.035

    • Related Report
      2020 Research-status Report
    • Peer Reviewed
  • [Journal Article] Publisher Correction: Base editors for simultaneous introduction of C-to-T and A-to-G mutations2020

    • Author(s)
      Sakata Rina C.、Ishiguro Soh、Mori Hideto、Tanaka Mamoru、Tatsuno Kenji、Ueda Hiroki、Yamamoto Shogo、Seki Motoaki、Masuyama Nanami、Nishida Keiji、Nishimasu Hiroshi、Arakawa Kazuharu、Kondo Akihiko、Nureki Osamu、Tomita Masaru、Aburatani Hiroyuki、Yachie Nozomu
    • Journal Title

      Nature Biotechnology

      Volume: 38 Issue: 7 Pages: 901-901

    • DOI

      10.1038/s41587-020-0585-1

    • Related Report
      2020 Research-status Report
    • Peer Reviewed
  • [Journal Article] Structural basis for the promiscuous PAM recognition by Corynebacterium diphtheriae Cas92019

    • Author(s)
      Hirano Seiichi、Abudayyeh Omar O.、Gootenberg Jonathan S.、Horii Takuro、Ishitani Ryuichiro、Hatada Izuho、Zhang Feng、Nishimasu Hiroshi、Nureki Osamu
    • Journal Title

      Nature Communications

      Volume: 10 Issue: 1 Pages: 1968-1968

    • DOI

      10.1038/s41467-019-09741-6

    • Related Report
      2019 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Presentation] Structure, Mechanism & Evolution of CRISPR-Cas Enzymes2020

    • Author(s)
      Hiroshi Nishimasu
    • Organizer
      The 58th Annual Meeting of the Biophysical Society of Japan
    • Related Report
      2020 Research-status Report
    • Invited
  • [Presentation] Structure, Mechanism & Evolution of CRISPR-Cas Enzymes2020

    • Author(s)
      Hiroshi Nishimasu
    • Organizer
      MBSJ2020
    • Related Report
      2020 Research-status Report
    • Invited

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Published: 2018-07-25   Modified: 2023-01-30  

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