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Cell lineage analysis by using post-zygotic spontaneous mutations

Research Project

Project/Area Number 18K19340
Research Category

Grant-in-Aid for Challenging Research (Exploratory)

Allocation TypeMulti-year Fund
Review Section Medium-sized Section 44:Biology at cellular to organismal levels, and related fields
Research InstitutionOsaka University

Principal Investigator

UCHIMURA Arikuni  大阪大学, 生命機能研究科, 招へい教員 (20513063)

Project Period (FY) 2018-06-29 – 2021-03-31
Project Status Completed (Fiscal Year 2020)
Budget Amount *help
¥6,240,000 (Direct Cost: ¥4,800,000、Indirect Cost: ¥1,440,000)
Fiscal Year 2019: ¥2,860,000 (Direct Cost: ¥2,200,000、Indirect Cost: ¥660,000)
Fiscal Year 2018: ¥3,380,000 (Direct Cost: ¥2,600,000、Indirect Cost: ¥780,000)
Keywords突然変異 / 次世代シーケンサー / 細胞系譜 / モザイク変異 / 胚発生 / マウス
Outline of Final Research Achievements

For understanding the developmental system of multicellular organisms, it is important to understand the cell lineages during the developmental stage. In this study, whole-genome sequencing was performed on adult mouse tissue samples to accurately identify mutations naturally occurring during early development (observed as mosaic-state mutations in tissues). By measuring their variant allelle frequencies and analyzing them with methmatical model, we succeeded in developing a new methodology that enables to reconstruct early embryonic cell lineages.

Academic Significance and Societal Importance of the Research Achievements

本研究で開発に成功した「細胞系譜の解析技術」は、既存の方法に比べて、大きな優位性をもつが、シーケンシング時のカバレッジを増加させれば、さらに詳細な細胞系譜図の構築が可能になる。また、遺伝子組み換え技術を必要としないため、ヒト検体でも、すぐに応用可能な方法論である。医学研究も含めて、今後の生命科学の様々な領域で活用されていくと考えられる技術であり、学術的にも社会的にも意義の大きい研究だと考えられる。

Report

(4 results)
  • 2020 Annual Research Report   Final Research Report ( PDF )
  • 2019 Research-status Report
  • 2018 Research-status Report
  • Research Products

    (10 results)

All 2020 2019 2018

All Journal Article (2 results) (of which Peer Reviewed: 1 results,  Open Access: 1 results) Presentation (8 results) (of which Int'l Joint Research: 3 results,  Invited: 3 results)

  • [Journal Article] 実験用マウスを用いた放射線被ばくの次世代遺伝影響の解析2020

    • Author(s)
      佐藤康成、内村有邦
    • Journal Title

      広島医学

      Volume: 73 Pages: 228-232

    • Related Report
      2020 Annual Research Report
  • [Journal Article] Characteristics of induced mutations in offspring derived from irradiated mouse spermatogonia and mature oocytes2020

    • Author(s)
      Yasunari Satoh, Jun-ichi Asakawa, Mayumi Nishimura, Tony Kuo, Norio Shinkai, Harry M. Cullings, Yohei Minakuchi, Jun Sese, Atsushi Toyoda, Yoshiya Shimada, Nori Nakamura, Arikuni Uchimura
    • Journal Title

      Scientific Reports

      Volume: 10 Issue: 1 Pages: 37-37

    • DOI

      10.1038/s41598-019-56881-2

    • Related Report
      2019 Research-status Report
    • Peer Reviewed / Open Access
  • [Presentation] De novo生殖系列変異の特徴と後世代影響2020

    • Author(s)
      内村有邦、佐藤康成、樋口真弓、水口洋平、豊田敦、八木健
    • Organizer
      日本遺伝学会第92回大会
    • Related Report
      2020 Annual Research Report
  • [Presentation] De novo germline mutations and their phenotypic effects on future generations2019

    • Author(s)
      Arikuni Uchimura, Yasunari Satoh
    • Organizer
      第6回アジア環境変異原学会/日本環境変異原学会第48回大会 合同大会
    • Related Report
      2019 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] A new approach for de novo germline mutations using a mutation accumulation mouse model2019

    • Author(s)
      Arikuni Uchimura, Mayumi Higuchi, Yasunari Satoh, Yohei Minakuchi, Takahiro Tsuji, Masaaki Imanaka, Akiko Miura, Atsushi Toyoda, Takeshi Yagi
    • Organizer
      日本放射線影響学会第62回大会
    • Related Report
      2019 Research-status Report
    • Invited
  • [Presentation] Mutation spectrum in the genome of offspring derived from irradiated mouse spermatogonia and mature oocytes2019

    • Author(s)
      Yasunari Satoh, Mayumi Nishimura, Tony Kuo, Norio Shinkai, Harry M. Cullings, Yohei Minakuchi, Jun Sese, Atsushi Toyoda, Yoshiya Shimada, Nori Nakamura, Arikuni Uchimura
    • Organizer
      日本放射線影響学会第62回大会
    • Related Report
      2019 Research-status Report
  • [Presentation] De novo germline mutations and the phenotypic effects of mutation accumulation in laboratory mice2019

    • Author(s)
      Arikuni Uchimura, Yasunari Satoh, Mayumi Higuchi, Yohei Minakuchi, Jo Nishino, Atsushi Toyoda, Takeshi Yagi
    • Organizer
      The 16th International Congress of Radiation Research 2019
    • Related Report
      2019 Research-status Report
    • Int'l Joint Research
  • [Presentation] Induced mutations in offspring derived from irradiated mouse spermatogonia and mature oocytes2019

    • Author(s)
      Yasunari Satoh, Jun-ichi Asakawa, Mayumi Nishimura, Harry M. Cullings, Yoshiya Shimada, Nori Nakamura, Arikuni Uchimura
    • Organizer
      The 16th International Congress of Radiation Research 2019
    • Related Report
      2019 Research-status Report
    • Int'l Joint Research
  • [Presentation] マウスの生殖系列で発生する挿入欠失変異の発生頻度とその特徴2018

    • Author(s)
      内村有邦、樋口真弓、水口洋平、佐藤康成、辻隆弘、中本芳子、今中正明、三浦昭子、豊田敦、八木健
    • Organizer
      日本放射線影響学会第61回大会
    • Related Report
      2018 Research-status Report
  • [Presentation] マウス生殖系列で発生するde novo変異から見る哺乳類ゲノムの進化2018

    • Author(s)
      内村有邦、樋口真弓、水口洋平、松本拡高、若山清香、若山照彦、佐藤康成、福村龍太郎、辻隆弘、今中正明、中本芳子、三浦昭子、権藤洋一、豊田敦、八木健
    • Organizer
      第41回日本分子生物学会年会
    • Related Report
      2018 Research-status Report
    • Invited

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Published: 2018-07-25   Modified: 2022-01-27  

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