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Dissection of immune cell differentiation by a single cel epigenome analysis

Research Project

Project/Area Number 18K19569
Research Category

Grant-in-Aid for Challenging Research (Exploratory)

Allocation TypeMulti-year Fund
Review Section Medium-sized Section 54:Internal medicine of the bio-information integration and related fields
Research InstitutionTokyo University of Science

Principal Investigator

Ikawa Tomokatsu  東京理科大学, 研究推進機構生命医科学研究所, 教授 (60450392)

Project Period (FY) 2018-06-29 – 2020-03-31
Project Status Completed (Fiscal Year 2019)
Budget Amount *help
¥6,240,000 (Direct Cost: ¥4,800,000、Indirect Cost: ¥1,440,000)
Fiscal Year 2019: ¥3,120,000 (Direct Cost: ¥2,400,000、Indirect Cost: ¥720,000)
Fiscal Year 2018: ¥3,120,000 (Direct Cost: ¥2,400,000、Indirect Cost: ¥720,000)
KeywordsB細胞分化 / 造血幹細胞 / 転写因子 / エピジェネティクス / 運命決定 / B細胞 / 分化 / 1細胞
Outline of Final Research Achievements

Immune cells including B cells are generated from hematopoietic stem cells (HSCs). HSCs gradually specify their fates to finally commit to the B cell lineage. Transcription factors and epigenetic modification cooperate in the cell fate decision. However, the molecular mechanisms are yet to be determined. We have recently established the multipotent progenitor cell line named iLS (induced Leukocyte Stem) cells. iLS cells maintain the differentiation potential for T, B and myeloid lineage cells with unlimited self-renewal capacity. We have explored the single cell transcriptome profile of B lineage commitment using the iLS cells differentiating into B cells. Synchronous and cascading expression of key transcription factors and epigenetic factors was disclosed based on the single cell RNA-seq analysis. Thus the data provide a blueprint for studying the normal and malignant B cell generation.

Academic Significance and Societal Importance of the Research Achievements

抗体産生を担うB細胞は骨髄中で造血幹細胞から作られるが、そのメカニズムは未だ不明な点が多い。特に、造血幹細胞からどのようにB細胞系列へ運命決定されるのか明らかでない。本研究により、B細胞の生成に重要な遺伝子制御機構が1細胞レベルで明らかとなった。この知見は正常な免疫細胞分化のメカニズムだけでなく、白血病を含む様々な造血器腫瘍の発症機構の解明に貢献すると考えられる。今後、分化の分子機構がさらに明らかになれば、免疫細胞療法や再生医療への応用が期待される。

Report

(3 results)
  • 2019 Annual Research Report   Final Research Report ( PDF )
  • 2018 Research-status Report
  • Research Products

    (21 results)

All 2020 2019 2018 Other

All Int'l Joint Research (1 results) Journal Article (5 results) (of which Int'l Joint Research: 3 results,  Peer Reviewed: 3 results,  Open Access: 1 results) Presentation (15 results) (of which Int'l Joint Research: 8 results,  Invited: 3 results)

  • [Int'l Joint Research] University of Oxford(英国)

    • Related Report
      2019 Annual Research Report
  • [Journal Article] Single-cell transcriptomics reveals expansion of cytotoxic CD4 T cells in supercentenarians2019

    • Author(s)
      Hashimoto K, Kouno T, Ikawa T, Hayatsu N, Miyajima Y, Yabukami H, Terooatea T, Sasaki T, Suzuki T, Valentine M, Pascarella G, Minoda A, Taniuchi I, Arai Y, Hirose N, Carninci P
    • Journal Title

      PNAS

      Volume: 116 Issue: 48 Pages: 24242-24251

    • DOI

      10.1073/pnas.1907883116

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] B細胞分化を駆動する転写プログラムとクロマチン制御2019

    • Author(s)
      薬師寺 那由多, 伊川 友活
    • Journal Title

      臨床免疫・アレルギー科

      Volume: 71 Pages: 215-222

    • Related Report
      2019 Annual Research Report 2018 Research-status Report
  • [Journal Article] Suppression effect on IFN-g of adipose tissue-derived mesenchymal stem cells isolated from b2- microglobin-deficient mice2018

    • Author(s)
      Masuda J, Takayama E, Ichinose T, Strober W, Mizuno Kamiya M, Ikawa T, Kitani A, Kawaki H, Fuss I, Kawamoto H, Seno A, Vaidyanath A, Umemura N, Mizutani A, Kasai T, Honjo Y, Satoh A, Murakami H, Katsura Y, Kondoh N and Seno M
    • Journal Title

      Experimental and Therapeutic Med

      Volume: 16 Pages: 4277-4282

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Kelch-like protein 14 promotes B-1a but suppresses B-1b cell development2018

    • Author(s)
      Li, S., Liu, J., Min, Q., Ikawa, T., Yasuda, S., Yang, Y., Wang, Y.-Q., Tsubata, T., Zhao, Y. and Wang, J.-Y.
    • Journal Title

      Int. Immunol.

      Volume: 30 Issue: 7 Pages: 311-318

    • DOI

      10.1093/intimm/dxy033

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] 多能性前駆細胞からB細胞への分化における段階的転写制御2018

    • Author(s)
      宮井 智浩, 伊川 友活
    • Journal Title

      臨床免疫・アレルギー科

      Volume: 70 Pages: 503-513

    • NAID

      40021724858

    • Related Report
      2018 Research-status Report
  • [Presentation] ポリコームタンパクPCGF1は造血系細胞分化においてDNA複製と運命制御を結びつける働きをしている2020

    • Author(s)
      伊川 友活
    • Organizer
      さきがけ第4回終了領域研究会
    • Related Report
      2019 Annual Research Report
  • [Presentation] Non-canonical PRC1.1 is required for specification of hematopoietic progenitor cells toward B lymphoid lineage2019

    • Author(s)
      Takano J, Ito S, Nakajima-Takagi Y, Iwama A, Ikawa T and Koseki H
    • Organizer
      第13回日本エピジェネティクス研究会年会
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 異性型ポリコームタンパクPCGF1はPRC2の機能を安定化させることによりB 細胞系列への運命決定を促進している2019

    • Author(s)
      伊川 友活, 高野 淳一郎, 古関 明彦
    • Organizer
      第29回Kyoto T cell Conference
    • Related Report
      2019 Annual Research Report
  • [Presentation] Essential roles of variant PCGF1-PRC1 n regulating hematopoietic cell fates2019

    • Author(s)
      Ikawa T and Takano J
    • Organizer
      FASEB The Molecular Mechanisms of Immune Cell Development and Function Conference
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 無限に増幅する血液前駆細胞を用いた抗腫瘍薬の開発2019

    • Author(s)
      伊川 友活
    • Organizer
      BioJapan2019
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] Variant PCGF1-PRC1 regulates hematopoietic cell fates through nucleosome composition2019

    • Author(s)
      Takano J, Ito S, Nakajima-Takagi Y, Iwama A, Koseki H, and Ikawa T
    • Organizer
      第81回日本血液学会
    • Related Report
      2019 Annual Research Report
  • [Presentation] Epigenetic control in early lymphocyte development2019

    • Author(s)
      Ikawa T
    • Organizer
      The 30th Anniversary International Symposium of Research Institute for Biomedical Sciences
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Essential roles of PCGF1 in controlling hematopoietic cell fates2019

    • Author(s)
      Ikawa T , Takano J, and Koseki H
    • Organizer
      第48回日本免疫学会
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Non-canonical PRC1.1 is required for Specification of hematopoietic progenitor cells toward B lymphoid lineage2018

    • Author(s)
      Takano J, Nakajima-Takagi Y, Koseki H, Iwama A and Ikawa T
    • Organizer
      第47回日本免疫学会
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research
  • [Presentation] 異性型ポリコームタンパクPCGF1は造血幹細胞からB細胞系列への運命決定に重要である2018

    • Author(s)
      伊川 友活
    • Organizer
      さきがけ第3回終了領域研究会
    • Related Report
      2018 Research-status Report
  • [Presentation] Non-canonical PRC1.1 is required for Specification of hematopoietic progenitor cells toward B lymphoid lineage2018

    • Author(s)
      Takano J, Nakajima-Takagi Y, Koseki H, Iwama A and Ikawa T
    • Organizer
      第80回日本血液学会
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research
  • [Presentation] Automated Live Imaging and Single-cell Picking System for RNA-seq2018

    • Author(s)
      小川 泰策, 伊川 友活, 城口 克之
    • Organizer
      第56回日本生物物理学会年会
    • Related Report
      2018 Research-status Report
  • [Presentation] Transcriptional programs that guide B cell development2018

    • Author(s)
      Ikawa T
    • Organizer
      The 2nd international innovation dialogue on genome engineering animal models and biomedical research symposium
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] A critical role of Non-canonical PRC1.1 for lineage determination of hematopoietic progenitor cells2018

    • Author(s)
      Takano J, Nakajima-Takagi Y, Koseki H, Iwama A and Ikawa T
    • Organizer
      第9回日本血液学会国際シンポジウム
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research
  • [Presentation] 異性型ポリコームタンパクPCGF1は造血幹細胞からB 細胞系列への運命決定に重要である2018

    • Author(s)
      伊川 友活, 高野 淳一郎, 古関 明彦
    • Organizer
      第28回Kyoto T cell Conference
    • Related Report
      2018 Research-status Report

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Published: 2018-07-25   Modified: 2021-02-19  

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