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Development of region-specific inhibitors against epigenomic aberrations critical for gastrointestinal tumorigenesis

Research Project

Project/Area Number 18K19572
Research Category

Grant-in-Aid for Challenging Research (Exploratory)

Allocation TypeMulti-year Fund
Review Section Medium-sized Section 55:Surgery of the organs maintaining homeostasis and related fields
Research InstitutionChiba University

Principal Investigator

Kaneda Atsushi  千葉大学, 大学院医学研究院, 教授 (10313024)

Project Period (FY) 2018-06-29 – 2020-03-31
Project Status Completed (Fiscal Year 2019)
Budget Amount *help
¥6,240,000 (Direct Cost: ¥4,800,000、Indirect Cost: ¥1,440,000)
Fiscal Year 2019: ¥2,860,000 (Direct Cost: ¥2,200,000、Indirect Cost: ¥660,000)
Fiscal Year 2018: ¥3,380,000 (Direct Cost: ¥2,600,000、Indirect Cost: ¥780,000)
Keywords癌 / エピジェネティクス / 阻害剤 / PIポリアミド / エピゲノム / がん / 化合物合成 / ピロールイミダゾールポリアミド
Outline of Final Research Achievements

Taking advantage by utilizing small molecules that bind to DNA by sequence-specific manner, we develop middle molecule compounds that can rewrite the accumulated epigenomic aberrations or prevent their accumulations in targeted genomic regions. Pyrrole-imidazole (PI) polyamides are cell-permeable and intravenously injectable molecules with low toxicity that can bind to the minor groove of DNA by sequence-specific manner. Epigeneitic inhibitors are conjugated to PI polyamides, and delivered to the targeted genomic regions by sequence-specific manner when given to cultured cancer cells. We established PI polyamides conjugated with epigenetic inhibitors that altered epigenome at selected regions. We also identified critical aberrant epigenomic alterations that were seen in cancer e.g. gastric and prostate cancer and could be candidate regions targeted by these conjugates.

Academic Significance and Societal Importance of the Research Achievements

エピゲノムとは細胞のゲノムの修飾物のことで、どの遺伝子を使いどの遺伝子を使わないか、つまりは細胞の運命や振舞いを決定する働きを持ち、その異常は癌の重要な原因の1つとなる。しかし現状のエピゲノム阻害剤は、癌の原因となっている異常修飾領域だけでなく、正常な細胞に存在する重要な修飾も含めてゲノム全体で作用してしまうことで副作用が問題となる。本研究は、特定の塩基配列を含む選択的なゲノム領域のみエピゲノム阻害剤が作用することを可能にする化合物開発に挑戦し、技術的に成功するとともに、次の発展を目指し胃癌・前立腺癌などで重要なエピゲノム異常を標的とする化合物開発へと進行している。

Report

(3 results)
  • 2019 Annual Research Report   Final Research Report ( PDF )
  • 2018 Research-status Report
  • Research Products

    (20 results)

All 2019 2018 Other

All Int'l Joint Research (1 results) Journal Article (2 results) (of which Peer Reviewed: 2 results,  Open Access: 2 results) Presentation (14 results) (of which Int'l Joint Research: 4 results,  Invited: 2 results) Remarks (2 results) Funded Workshop (1 results)

  • [Int'l Joint Research] Leipzig University(ドイツ)

    • Related Report
      2019 Annual Research Report
  • [Journal Article] Synthsis of LSD1 Inhibitor-Pyrrole-Imidazole Polyamide Conjugates for Region-Specific Alterations of Histone Modification2019

    • Author(s)
      Qin R, Takayanagi S, Kondo Y, Li J, Shiga N, Nakajima M, Shinohara K, Yoda N, Suzuki T, Kaneda A, and Nemoto T
    • Journal Title

      Heterocycles

      Volume: - Issue: 2 Pages: 891-905

    • DOI

      10.3987/com-18-s(f)57

    • Related Report
      2019 Annual Research Report 2018 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Region-specific alteration of histone modification by LSD1 inhibitor conjugated with pyrrole-imidazole polyamide2018

    • Author(s)
      Alagarswamy K, Shinohara K, Takayanagi S, Fukuyo M, Okabe A, Rahmutulla B, Yoda N, Qin R, Shiga N, Sugiura M, Sato H, Kita K, Suzuki T, Nemoto T, Kaneda A
    • Journal Title

      Oncotarget

      Volume: 9 Issue: 50 Pages: 29316-29335

    • DOI

      10.18632/oncotarget.25451

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Open Access
  • [Presentation] がんエピゲノム異常に焦点を当てた塩基配列選択的DNA結合小分子の開発.2019

    • Author(s)
      篠原憲一、依田夏美、Qin R、福世真樹、岡部篤史、中島誠也、鈴木孝禎、Rahmutulla B、根本哲弘、金田篤志.
    • Organizer
      第13回日本エピジェネティクス研究会年会.
    • Related Report
      2019 Annual Research Report
  • [Presentation] Region-selective alteration of histone modification using novel conjugates between Py-Im-polyamides and inhibitor of epigenome-related enzymes.2019

    • Author(s)
      Martin Lackner, Ken-ichi Shinohara, Atsushi Okabe, Masaki Fukuyo, Rui Qin, Masaya Nakajima, Bahityar Rahmutulla, Eriko Ikeda, Nemoto Tetsuhiro, Atsushi Kaneda.
    • Organizer
      第13回日本エピジェネティクス研究会年会
    • Related Report
      2019 Annual Research Report
  • [Presentation] How do MS-275-PIP Conjugates Affect the Epigenome?2019

    • Author(s)
      Martin Lackner, Ken-ichi Shinohara, Atsushi Okabe, Masaki Fukuyo, Rui Qin, Masaya Nakajima, Bahityar Rahmutulla, Nemoto Tetsuhiro, Atsushi Kaneda.
    • Organizer
      6th International Cancer Epigenomics Symposium
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 新規化学合成化合物によるp53依存的抗がん作用.2019

    • Author(s)
      池田英里子、喜多和子、井上貴登、松田和暁、宮﨑柊子、竹野有加里 、新宅敬彦 、依田夏美、丸山陽佳、福世真樹 、篠原憲一、松坂恵介、根本哲宏、金田篤志.
    • Organizer
      第42回日本分子生物学会
    • Related Report
      2019 Annual Research Report
  • [Presentation] Identification of critical AR-V7 downstream targets and aberrant super-enhancer regulation in castration resistant prostate cancer.2019

    • Author(s)
      Atsushi Kaneda, Masahiro Sugiura, Hiroaki Sato, Manato Kanesata, Atsushi Okabe, Masaki Fukuyo, Tomohiko Ichikawa.
    • Organizer
      Tohoku Forum for Creativity Thematic Program 2019 “Cancer Etiology”
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Differences between castration sensitive and resistant prostate cancer in response to hypoxia2019

    • Author(s)
      金坂学斗、佐藤広明、杉浦正洋、岡部篤史、福世真樹、坂本信一、小宮顕、市川智彦、金田篤志
    • Organizer
      第78回日本癌学会学術総会
    • Related Report
      2019 Annual Research Report
  • [Presentation] Aberrant AR-independent super-enhancer activation in castration resistant prostate cancer.2019

    • Author(s)
      Sato A, Sugiura M, Okabe A, Fukuyo M, Kanesaka M, Sakamoto S, Komiya A, Ichikawa T, Kaneda A
    • Organizer
      第78回日本癌学会学術総会
    • Related Report
      2019 Annual Research Report
  • [Presentation] 前立腺癌の去勢治療抵抗性獲得におけるエピジェネティック機構.2019

    • Author(s)
      金田篤志、杉浦正洋、佐藤広明、岡部篤史、福世真樹、金坂学斗、市川智彦
    • Organizer
      第5回がんゲノム・エピゲノム研究会
    • Related Report
      2019 Annual Research Report
  • [Presentation] PIP-LSD1選択的阻害剤ハイブリッド分子の合成と機能評価.2019

    • Author(s)
      Rui Qin,高柳志穂理,滋賀直樹,Kokiladevi Alagarswamy,篠原憲一,鈴木孝禎,金田篤志,根本哲宏.
    • Organizer
      日本薬学会 第139年会
    • Related Report
      2018 Research-status Report
  • [Presentation] LSD1 Inhibitor Conjugated with PI Polyamide Enhances Region Specific Activation of Genomic Regions.2018

    • Author(s)
      Kokiladevi Alagarswamy, Ken-ichi Shinohara, Shihori Takayanagi, Masaki Fukuyo, Atsushi Okabe, Bahityar Rahmutulla, Natsumi Yoda, Rui Qin, Naoki Shiga, Kazuko Kita, Takayoshi Suzuki, Tetsuhiro Nemoto, Atsushi Kaneda.
    • Organizer
      Vanderbilt-Ingram Cancer Center Annual Scientific Retreat
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research
  • [Presentation] 癌エピゲノム異常の制御を目指した塩基配列選択的DNA結合小分子の開発.2018

    • Author(s)
      篠原憲一, 依田夏美, 覃 睿, 福世真樹, 岡部篤史, Alagarswamy Kokiladevi, 仲野駿一, 鈴木孝禎, 根本哲宏, 金田篤志.
    • Organizer
      第27回日本癌病態治療研究会
    • Related Report
      2018 Research-status Report
  • [Presentation] DNA結合小分子とLSD1阻害剤の融合化合物による新規エピゲノム標的薬剤の開発.2018

    • Author(s)
      依田夏美, 篠原憲一, 岡部篤史, 根本哲宏, 福世真樹, 喜多和子, 金田篤志.
    • Organizer
      平成 30年度関東研究医養成コンソーシアム
    • Related Report
      2018 Research-status Report
  • [Presentation] DNA結合小分子を応用した領域選択的エピゲノム制御概念の開発.2018

    • Author(s)
      篠原憲一, 依田夏美, 福世真樹, 岡部篤史, Kokiladevi Alagarswamy, Bahityar Rahmutulla, 覃 睿, 中島誠也, 喜多和子, 鈴木孝禎, 根本哲宏, 金田篤志.
    • Organizer
      第41回分子生物学会年会
    • Related Report
      2018 Research-status Report
  • [Presentation] Increased expression of tumor related genes by histone modification alteration at enhancer regions in GC cells with Epstein-Barr virus infection.2018

    • Author(s)
      Wenzhe Li, Atsushi Okabe, Keisuke Matsusaka, Rahmutulla Bahityar, Masaki Fukuyo, Atsushi Kaneda.
    • Organizer
      The 41st Annual Meeting of the Molecular Biology Society of Japan
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research
  • [Remarks] 分子腫瘍学HP - 千葉大学大学院医学研究院

    • URL

      https://www.m.chiba-u.ac.jp/class/moloncol/

    • Related Report
      2019 Annual Research Report
  • [Remarks] 千葉大学大学院医学研究院分子腫瘍学HP

    • URL

      http://www.m.chiba-u.ac.jp/class/moloncol/

    • Related Report
      2018 Research-status Report
  • [Funded Workshop] 6th International Cancer Epigenomics Symposium2019

    • Related Report
      2019 Annual Research Report

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Published: 2018-07-25   Modified: 2021-02-19  

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