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Designing lipid membrane nanodomains using DNA origami

Research Project

Project/Area Number 18K19831
Research Category

Grant-in-Aid for Challenging Research (Exploratory)

Allocation TypeMulti-year Fund
Review Section Medium-sized Section 62:Applied informatics and related fields
Research InstitutionTohoku University

Principal Investigator

Suzuki Yuki  東北大学, 学際科学フロンティア研究所, 助教 (50636066)

Project Period (FY) 2018-06-29 – 2021-03-31
Project Status Completed (Fiscal Year 2020)
Budget Amount *help
¥6,370,000 (Direct Cost: ¥4,900,000、Indirect Cost: ¥1,470,000)
Fiscal Year 2020: ¥2,210,000 (Direct Cost: ¥1,700,000、Indirect Cost: ¥510,000)
Fiscal Year 2019: ¥2,210,000 (Direct Cost: ¥1,700,000、Indirect Cost: ¥510,000)
Fiscal Year 2018: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
KeywordsDNAナノテクノロジー / DNAオリガミ / 脂質膜 / 原子間力顕微鏡 / 自己集合化 / 自己組織化 / 膜ドメイン / 分子デザイン / 相分離
Outline of Final Research Achievements

The fluidity of the plasma membrane not only allows the diffusion of proteins and other biomolecules within the membrane but also affects the function of these molecules through the formation of membrane nanodomains. Techniques for artificially producing lipid membrane nanodomains would enable us to reconstitute biological phenomena take place on the cellular membranes. In this study, we aimed to develop a technique to design artificial membrane nanodomains using DNA origami nanothechnology. DNA origami nanostructures were self-assembled into two-dimensional lattices on a mica-supported lipid bilayer membranes, which resulted in the compartmentalization of the bilayer surface into nanoscale domains with predesigned shapes which designated by the shapes of DNA origami building blocks.

Academic Significance and Societal Importance of the Research Achievements

人工的に再構成した脂質二重膜は生体膜反応に関わる脂質やタンパク質の挙動を解析するためのモデルシステムとなるだけでなく,生体適合界面としても利用されており,その表面のプロセシング及び機能付加は新規バイオデバイス・バイオマテリアルの創成につながると期待される.DNAによって仕切られた脂質膜のナノドメインは,膜タンパク質をはじめとしたさまざまな分子をデザインした周期で配列化するために利用できるほか,それらの分子の空間的配置や局所的な密度を精密制御するための基盤技術としても応用が期待できる.

Report

(4 results)
  • 2020 Annual Research Report   Final Research Report ( PDF )
  • 2019 Research-status Report
  • 2018 Research-status Report
  • Research Products

    (18 results)

All 2021 2020 2019 2018 Other

All Int'l Joint Research (1 results) Journal Article (7 results) (of which Int'l Joint Research: 2 results,  Peer Reviewed: 7 results,  Open Access: 1 results) Presentation (10 results) (of which Int'l Joint Research: 4 results,  Invited: 4 results)

  • [Int'l Joint Research] Kent State University(米国)

    • Related Report
      2020 Annual Research Report
  • [Journal Article] Chemo-mechanical Modulation of Cell Motions Using DNA Nanosprings2021

    • Author(s)
      Deepak Karna, Morgan Stilgenbauer, Sagun Jonchhe, Kazuya Ankai, Ibuki Kawamata, Yunxi Cui, Yaorong Zheng, Yuki Suzuki, Hanbin Mao
    • Journal Title

      Bioconjugate Chemistry

      Volume: 32 Issue: 2 Pages: 311-317

    • DOI

      10.1021/acs.bioconjchem.0c00674

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Large deformation of a DNA origami nanoarm through the cumulative actuation of tension-adjustable modules2020

    • Author(s)
      Yuki Suzuki, Ibuki Kawamata, Kohei Mizunom Satoshi Murata
    • Journal Title

      Angewandte Chemie International Edition

      Volume: 59 Issue: 15 Pages: 6230-6234

    • DOI

      10.1002/anie.201916233

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Session 1SCA?Utilizing soft compartments/interfaces for the creation of artificial biosystems2020

    • Author(s)
      Sato Yusuke、Morita Masamune、Suzuki Yuki
    • Journal Title

      Biophysical Reviews

      Volume: 12 Issue: 2 Pages: 257-259

    • DOI

      10.1007/s12551-020-00647-y

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] DNA Origami Nanoplate‐Based Emulsion with Nanopore Function2019

    • Author(s)
      Ishikawa Daisuke、Suzuki Yuki、Kurokawa Chikako、Ohara Masayuki、Tsuchiya Misato、Morita Masamune、Yanagisawa Miho、Endo Masayuki、Kawano Ryuji、Takinoue Masahiro
    • Journal Title

      Angewandte Chemie International Edition

      Volume: 58 Issue: 43 Pages: 15299-15303

    • DOI

      10.1002/anie.201908392

    • Related Report
      2019 Research-status Report
    • Peer Reviewed
  • [Journal Article] Self-assembly of Two-dimensional DNA Origami Lattices on Lipid Bilayer Membranes2019

    • Author(s)
      鈴木勇輝,遠藤政幸,杉山弘
    • Journal Title

      Seibutsu Butsuri

      Volume: 59 Issue: 2 Pages: 103-105

    • DOI

      10.2142/biophys.59.103

    • NAID

      130007620404

    • ISSN
      0582-4052, 1347-4219
    • Related Report
      2019 Research-status Report 2018 Research-status Report
    • Peer Reviewed
  • [Journal Article] Environment-dependent self-assembly of DNA origami lattices on phase-separated lipid membranes2018

    • Author(s)
      Yusuke Sato, Masayuki Endo, Masamune Morita, Masahiro Takinoue, Hiroshi Sugiyama, Satoshi Murata, Shin-ichiro M. Nomura, Yuki Suzuki
    • Journal Title

      Advanced Materials Interfaces

      Volume: 5 Issue: 14 Pages: 1800437-1800437

    • DOI

      10.1002/admi.201800437

    • Related Report
      2018 Research-status Report
    • Peer Reviewed
  • [Journal Article] Complexing DNA origami frameworks through sequential self-assembly based on directed docking2018

    • Author(s)
      Y. Suzuki, H. Sugiyama, M. Endo
    • Journal Title

      Angewandte Chemie, International Edition

      Volume: 57 Issue: 24 Pages: 7061-7065

    • DOI

      10.1002/anie.201801983

    • Related Report
      2018 Research-status Report
    • Peer Reviewed
  • [Presentation] Construction of DNA nanostructures exhibiting modulated structural transformation2020

    • Author(s)
      Yuki Suzuki
    • Organizer
      日本生物物理学会第58回年会
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] DNAで創るさまざまな構造と機能2020

    • Author(s)
      鈴木 勇輝
    • Organizer
      東京大学化学生命工学専攻 2020年度 談話会
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] DNA origami lattices self-assembled on lipid bilayer membranes2019

    • Author(s)
      Yuki Suzuki
    • Organizer
      第57回日本生物物理学会年会
    • Related Report
      2019 Research-status Report
  • [Presentation] Reversible deformation of a linear DNA origami structure through the cumulative actuation of tension-adjustable modules2019

    • Author(s)
      Yuki Suzuki, Ibuki Kawamata, Kohei Mizuno, Satoshi Murata
    • Organizer
      Nucleic Acid Nanotechnology: from algorithmic design to biochemical applications (NANTECH 2019)
    • Related Report
      2019 Research-status Report
    • Int'l Joint Research
  • [Presentation] Large deformation of a linear DNA origami beam via cumulative actuation of tension-adjustable modules2019

    • Author(s)
      Yuki Suzuki, Ibuki Kawamata, Kohei Mizuno, Satoshi Murata
    • Organizer
      16th Annual Conference on Foundations of Nanoscience: Self-Assembled Architectures and Devices (FNANO19)
    • Related Report
      2019 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] Cumulative deformation of a linear DNA origami nanoarm comprising tension-adjustable modules2019

    • Author(s)
      Yuki Suzuki, Ibuki Kawamata, Kohei Mizuno, Satoshi Murata
    • Organizer
      Commemorative International Symposium of the Japan Society of Nucleic Acids Chemistry (CISNAC2019)
    • Related Report
      2019 Research-status Report
    • Int'l Joint Research
  • [Presentation] Cumulative deformation of a linear DNA origami beam consisting of tension-adjustable modules2019

    • Author(s)
      Yuki Suzuki, Kohei Mizuno, Ibuki Kawamata, Satoshi Murata
    • Organizer
      第2回分子ロボティクス年次大会
    • Related Report
      2018 Research-status Report
  • [Presentation] Cumulative deformation of a linear DNA origami structure consisting of tension-adjustable modules2019

    • Author(s)
      Yuki Suzuki, Kohei Mizuno, Ibuki Kawamata, Satoshi Murata
    • Organizer
      日本化学会第99回春季年会
    • Related Report
      2018 Research-status Report
  • [Presentation] Cumulative deformation of a linear DNA origami structure consisting of tension-adjustable modules2018

    • Author(s)
      Yuki Suzuki, Kohei Mizuno, Ibuki Kawamata, Satoshi Murata
    • Organizer
      The 45th International Symposium on Nucleic Acids Chemistry (ISNAC2018)
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research
  • [Presentation] DNAの自己集合で創る多様な構造と機能2018

    • Author(s)
      鈴木勇輝
    • Organizer
      細胞でつながる研究会-Bio. Phys. Chem. 三重点の探索-
    • Related Report
      2018 Research-status Report
    • Invited

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Published: 2018-07-25   Modified: 2022-01-27  

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