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Diversity of the bacteria with symbiotic relationships to marine microeukaryotes

Research Project

Project/Area Number 18KK0203
Research Category

Fund for the Promotion of Joint International Research (Fostering Joint International Research (B))

Allocation TypeMulti-year Fund
Review Section Medium-sized Section 45:Biology at organismal to population levels and anthropology, and related fields
Research InstitutionUniversity of Tsukuba

Principal Investigator

INAGAKI Yuji  筑波大学, 計算科学研究センター, 教授 (50387958)

Co-Investigator(Kenkyū-buntansha) 石谷 佳之  国立研究開発法人海洋研究開発機構, 超先鋭研究開発部門(超先鋭研究プログラム), 特任研究員 (60772043)
中山 卓郎  筑波大学, 計算科学研究センター, 助教 (70583508)
矢吹 彬憲  国立研究開発法人海洋研究開発機構, 地球環境部門(海洋生物環境影響研究センター), グループリーダー (20711104)
Project Period (FY) 2018-10-09 – 2024-03-31
Project Status Completed (Fiscal Year 2023)
Budget Amount *help
¥17,810,000 (Direct Cost: ¥13,700,000、Indirect Cost: ¥4,110,000)
Fiscal Year 2022: ¥2,340,000 (Direct Cost: ¥1,800,000、Indirect Cost: ¥540,000)
Fiscal Year 2021: ¥5,070,000 (Direct Cost: ¥3,900,000、Indirect Cost: ¥1,170,000)
Fiscal Year 2020: ¥5,460,000 (Direct Cost: ¥4,200,000、Indirect Cost: ¥1,260,000)
Fiscal Year 2019: ¥3,770,000 (Direct Cost: ¥2,900,000、Indirect Cost: ¥870,000)
Fiscal Year 2018: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Keywords原生生物-細菌共生系 / 細胞内共生 / 生物多様性 / 海洋生態系 / 生態地理 / 原生生物‐細菌共生系
Outline of Final Research Achievements

When assessing bacterial diversity in the ocean using metabarcoding (MB) data, many MB sequences do not show any sequence similarities from previously known species that have been studied by the standard method incorporating laboratory culture. Since the ocean is home to a wide variety of bacteria, MB sequences are thought to encompass the bacteria new to science because they have never been cultured or difficult to culture in the laboratory. However, due to potential difficulties in experiments, even the bacterial diversity in the ocean predicted by MB methods does not adequately cover the true diversity of those with symbiotic relationships with eukaryotes. In this study, we aimed to sequence the genomes of bacteria with symbiotic relationships with a wide range of marine microeukaryotes. In particular, we succeeded in sequencing the genomes of the cyanobacteria symbiotically associated with dinoflagellates.

Academic Significance and Societal Importance of the Research Achievements

ディノフィシス目渦鞭毛藻の一種であるCitharistes regiusと共生するシアノバクテリアの全ゲノム配列決定に成功した。この共生性シアノバクテリア(CregCyn)は海洋性ピコシアノバクテリア系統に属し、Citharistesに近縁な別の渦鞭毛藻Ornithocercus magnificusの共生性シアノバクテリア(OmCyn)と近縁であったが、それぞれ独立に共生関係を確立したと考えられる。本研究は、渦鞭毛藻とシアノバクテリアの共生の複雑な歴史と、海洋ピコシアノバクテリアのゲノム多様性の理解に貢献する。

Report

(7 results)
  • 2023 Annual Research Report   Final Research Report ( PDF )
  • 2022 Research-status Report
  • 2021 Research-status Report
  • 2020 Research-status Report
  • 2019 Research-status Report
  • 2018 Research-status Report
  • Research Products

    (83 results)

All 2024 2023 2022 2021 2020 2019 Other

All Int'l Joint Research (1 results) Journal Article (23 results) (of which Int'l Joint Research: 5 results,  Peer Reviewed: 19 results,  Open Access: 21 results) Presentation (59 results) (of which Int'l Joint Research: 22 results,  Invited: 10 results)

  • [Int'l Joint Research] ロスコフ海洋研究所(フランス)

    • Related Report
      2019 Research-status Report
  • [Journal Article] Convergent reductive evolution of cyanobacteria in symbiosis with Dinophysiales dinoflagellates2024

    • Author(s)
      Nakayama Takuro、Nomura Mami、Yabuki Akinori、Shiba Kogiku、Inaba Kazuo、Inagaki Yuji
    • Journal Title

      bioRxiv

      Volume: 10.1101/2024.01.11.574452 Pages: 574452-574452

    • DOI

      10.1101/2024.01.11.574452

    • Related Report
      2023 Annual Research Report
    • Open Access
  • [Journal Article] Encyclopedia of Family A DNA Polymerases Localized in Organelles: Evolutionary Contribution of Bacteria Including the Proto-Mitochondrion2024

    • Author(s)
      Harada Ryo、Hirakawa Yoshihisa、Yabuki Akinori、Kim Eunsoo、Yazaki Euki、Kamikawa Ryoma、Nakano Kentaro、Elias Marek、Inagaki Yuji
    • Journal Title

      Molecular Biology and Evolution

      Volume: 41 Issue: 2

    • DOI

      10.1093/molbev/msae014

    • Related Report
      2023 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Gleaning Euglenozoa-specific DNA polymerases in public single-cell transcriptome data2023

    • Author(s)
      Harada Ryo、Inagaki Yuji
    • Journal Title

      Protist

      Volume: 174 Issue: 6 Pages: 125997-125997

    • DOI

      10.1016/j.protis.2023.125997

    • Related Report
      2023 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The closest lineage of Archaeplastida is revealed by phylogenomics analyses that include Microheliella maris2022

    • Author(s)
      Yazaki Euki、Yabuki Akinori、Imaizumi Ayaka、Kume Keitaro、Hashimoto Tetsuo、Inagaki Yuji
    • Journal Title

      Open Biology

      Volume: 12 Issue: 4 Pages: 210376-210376

    • DOI

      10.1098/rsob.210376

    • Related Report
      2022 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Comparative Plastid Genomics of Green-Colored Dinoflagellates Unveils Parallel Genome Compaction and RNA Editing2022

    • Author(s)
      Matsuo Eriko、Morita Kounosuke、Nakayama Takuro、Yazaki Euki、Sarai Chihiro、Takahashi Kazuya、Iwataki Mitsunori、Inagaki Yuji
    • Journal Title

      Frontiers in Plant Science

      Volume: 13 Pages: 918543-918543

    • DOI

      10.3389/fpls.2022.918543

    • Related Report
      2022 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] A novel structural maintenance of chromosomes (SMC)-related protein family specific to Archaea2022

    • Author(s)
      Yoshinaga Mari、Nakayama Takuro、Inagaki Yuji
    • Journal Title

      Frontiers in Microbiology

      Volume: 13 Pages: 913088-913088

    • DOI

      10.3389/fmicb.2022.913088

    • Related Report
      2022 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Microheliella maris possesses the most gene-rich mitochondrial genome in Diaphoretickes2022

    • Author(s)
      Yazaki Euki、Yabuki Akinori、Nishimura Yuki、Shiratori Takashi、Hashimoto Tetsuo、Inagaki Yuji
    • Journal Title

      Frontiers in Ecology and Evolution

      Volume: 10 Pages: 1030570-1030570

    • DOI

      10.3389/fevo.2022.1030570

    • Related Report
      2022 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Ubiquity and Origins of Structural Maintenance of Chromosomes (SMC) Proteins in Eukaryotes2021

    • Author(s)
      Yoshinaga Mari、Inagaki Yuji
    • Journal Title

      Genome Biology and Evolution

      Volume: 13 Issue: 12

    • DOI

      10.1093/gbe/evab256

    • NAID

      120007188738

    • Related Report
      2021 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Signs of the plastid: Enzymes involved in plastid-localized metabolic pathways in a eugregarine species2021

    • Author(s)
      Yazaki Euki、Miyata Ryosuke、Chikami Yasuhiko、Harada Ryo、Kawakubo Takashi、Tanifuji Goro、Nakayama Takuro、Yahata Kensuke、Hashimoto Tetsuo、Inagaki Yuji
    • Journal Title

      Parasitology International

      Volume: 83 Pages: 102364-102364

    • DOI

      10.1016/j.parint.2021.102364

    • Related Report
      2021 Research-status Report
    • Peer Reviewed
  • [Journal Article] Phylogenomics invokes the clade housing Cryptista, Archaeplastida, and Microheliella maris2021

    • Author(s)
      Yazaki Euki、Yabuki Akinori、Imaizumi Ayaka、Kume Keitaro、Hashimoto Tetsuo、Inagaki Yuji
    • Journal Title

      bioRxiv

      Volume: -

    • DOI

      10.1101/2021.08.29.458128

    • Related Report
      2021 Research-status Report
    • Open Access
  • [Journal Article] Phage Origin of Mitochondrion-Localized Family A DNA Polymerases in Kinetoplastids and Diplonemids2021

    • Author(s)
      Harada Ryo、Inagaki Yuji
    • Journal Title

      Genome Biology and Evolution

      Volume: 13 Issue: 2

    • DOI

      10.1093/gbe/evab003

    • NAID

      120007132512

    • Related Report
      2020 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Mitochondrial Genomes of Hemiarma marina and Leucocryptos marina Revised the Evolution of Cytochrome c Maturation in Cryptista2020

    • Author(s)
      Nishimura Yuki、Kume Keitaro、Sonehara Keito、Tanifuji Goro、Shiratori Takashi、Ishida Ken-ichiro、Hashimoto Tetsuo、Inagaki Yuji、Ohkuma Moriya
    • Journal Title

      Frontiers in Ecology and Evolution

      Volume: 8 Pages: 140-140

    • DOI

      10.3389/fevo.2020.00140

    • NAID

      120007132656

    • Related Report
      2020 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Putative genome features of relic green alga-derived nuclei in dinoflagellates and future perspectives as model organisms2020

    • Author(s)
      Nakayama Takuro、Takahashi Kazuya、Kamikawa Ryoma、Iwataki Mitsunori、Inagaki Yuji、Tanifuji Goro
    • Journal Title

      Communicative & Integrative Biology

      Volume: 13 Issue: 1 Pages: 84-88

    • DOI

      10.1080/19420889.2020.1776568

    • NAID

      120007132514

    • Related Report
      2020 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Barthelonids represent a deep-branching metamonad clade with mitochondrion-related organelles predicted to generate no ATP2020

    • Author(s)
      Yazaki Euki、Kume Keitaro、Shiratori Takashi、Eglit Yana、Tanifuji Goro、Harada Ryo、Simpson Alastair G. B.、Ishida Ken-ichiro、Hashimoto Tetsuo、Inagaki Yuji
    • Journal Title

      Proceedings of the Royal Society B: Biological Sciences

      Volume: 287 Issue: 1934 Pages: 20201538-20201538

    • DOI

      10.1098/rspb.2020.1538

    • NAID

      120007132513

    • Related Report
      2020 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Experimental Analysis of Diurnal Variations in Humic-Like Fluorescent Dissolved Organic Matter in Surface Seawater2020

    • Author(s)
      Omori Yuko, Saeki Akira, Wada Shigeki, Inagaki Yuji, Hama Takeo
    • Journal Title

      Frontiers in Marine Science

      Volume: 7 Pages: 944-944

    • DOI

      10.3389/fmars.2020.589064

    • Related Report
      2020 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Inventory and Evolution of Mitochondrion-localized Family A DNA Polymerases in Euglenozoa2020

    • Author(s)
      Ryo Harada, Yoshihisa Hirakawa, Akinori Yabuki, Yuichiro, Kashiyama, Moe Maruyama, Onuma Ryo, Petr Soukal, Shinya Miyagishima, Vladimir Hampl, Goro Tanifuji, Yuji Inagaki
    • Journal Title

      Pathogens

      Volume: 9 Issue: 4 Pages: 257-257

    • DOI

      10.3390/pathogens9040257

    • NAID

      120007127758

    • Related Report
      2019 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Dinoflagellates with relic endosymbiont nuclei as models for elucidating organellogenesis2020

    • Author(s)
      Chihiro Sarai, Goro Tanifuji, Takuro Nakayama, Ryoma Kamikawa, Kazuo Takahashi, Euki Yazaki, Eriko Matsuo, Ken-ichiro Ishida, Mitsuhisa Iwataki, Yuji Inagaki
    • Journal Title

      Proceedings of the National Academy of Sciences of the United States of America

      Volume: 117 Issue: 10 Pages: 5364-5375

    • DOI

      10.1073/pnas.1911884117

    • Related Report
      2019 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Comparative plastid genomics of Cryptomonas species reveals fine-scale genomic responses to loss of photosynthesis2020

    • Author(s)
      Goro Tanifuji, Ryoma Kamikawa, Christa E Moore, Tyler Mills, Naoko T Onodera, Yuichiro Kashiyama, John M Archibald, Yuji Inagaki, Tetsuo Hashimoto
    • Journal Title

      Genome Biology and Evolution

      Volume: 12 Issue: 2 Pages: 3926-3937

    • DOI

      10.1093/gbe/evaa001

    • NAID

      120007132768

    • Related Report
      2019 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Barthelonids represent a deep-branching Matamonad clade with mitochondrion-related organelles generating no ATP2019

    • Author(s)
      Euki Yazaki, Keitaro Kume, Takashi Shiratori, Yana Eglit, Ryo Harada, Alastair GB Simpson, Ken-ichiro Ishida, Tetsuo Hashimoto, Yuji Inagaki
    • Journal Title

      bioRxiv

      Volume: -

    • Related Report
      2019 Research-status Report
    • Open Access / Int'l Joint Research
  • [Journal Article] Large DNA virus promoted the endosymbiotic evolution to make a photosynthetic eukaryote2019

    • Author(s)
      Mitsuhiro Matsuo, Atsushi Katahara, Makoto Tachikawa, Yohei Miakuchi, Hideki Noguchi, Atsushi Toyoda, Asao Fujiyama, Yutaka Suzuki, Takayuki Hata, Soichirou Satoh, Takuro Nakayama, Ryoma Kamikawa, Mami Nomura, Yuji Inagaki, Ken-ichiro Ishida, Junichi Obokata
    • Journal Title

      bioRxiv

      Volume: -

    • DOI

      10.1101/809541

    • Related Report
      2019 Research-status Report
    • Open Access
  • [Journal Article] Single-cell genomics unveiled a cryptic cyanobacterial lineage with a worldwide distribution hidden by a dinoflagellate host2019

    • Author(s)
      Takuro Nakayama, Mami Nomura, Yoshihito Takano, Goro Tanifuji, Kogiku Shiba, Kazuo Inaba, Yuji Inagaki, Masakado Kawata
    • Journal Title

      Proceedings of the National Academy of Sciences of the United States of America

      Volume: 116 Issue: 32 Pages: 15973-15978

    • DOI

      10.1073/pnas.1902538116

    • Related Report
      2019 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] In silico structural modeling and analysis of elongation factor-1alpha and elongation factor-like protein2019

    • Author(s)
      Kotaro Sakamoto, Megumi Kayanuma, Yuji Inagaki, Tetsuo Hashimoto, Yasuteru Shigeta
    • Journal Title

      ACS Omega

      Volume: 4 Issue: 4 Pages: 7308-7316

    • DOI

      10.1021/acsomega.8b03547

    • Related Report
      2019 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Horizontally-acquired genetic elements in the mitochondrial genome of a centrohelid Marophrys sp. SRT127.2019

    • Author(s)
      Yuki Nishimura, Takashi Shiratori, Ken-ichiro Ishida, Tetsuo Hashimoto, Moriya Ohkuma, Yuji Inagaki
    • Journal Title

      Scientific Reports

      Volume: 9 Issue: 1 Pages: 4850-4850

    • DOI

      10.1038/s41598-019-41238-6

    • NAID

      120007128095

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Open Access
  • [Presentation] 光合成関連遺伝子に着目した緑色渦鞭毛藻TGD株のヌクレオモルフゲノムの解析2024

    • Author(s)
      藤代彩花, 磯貝龍邑, 高橋和也, 稲垣祐司, 岩滝光儀, 中山卓郎
    • Organizer
      日本藻類学会第48回大会
    • Related Report
      2023 Annual Research Report
  • [Presentation] ディプロモナス類の寄生虫化に伴う遺伝子レパートリーの変化:近縁自由生活種とのオーソログ比較解析2024

    • Author(s)
      久米慶太郎, 若島朋幸, 厳翼, 岩本亮介, 井上貴史, 谷藤吾朗, 神川龍馬, 稲垣祐司, 橋本哲男
    • Organizer
      第93回日本寄生虫学会合同大会
    • Related Report
      2023 Annual Research Report
  • [Presentation] 細胞サイズ別環境 DNA を用いた共生性シアノバクテリアの探索2023

    • Author(s)
      宮本知世, 矢吹彬憲, 野村真未, 柴小菊, 稲葉一男, 稲垣祐司, 中山卓郎
    • Organizer
      日本共生生物学会第7回大会
    • Related Report
      2023 Annual Research Report
  • [Presentation] I″型ルビスコの発見:I/I′型ルビスコに対する祖先的タンパク質群2023

    • Author(s)
      番場浩平, 稲垣祐司
    • Organizer
      日本共生生物学会第7回大会
    • Related Report
      2023 Annual Research Report
  • [Presentation] 一次植物内部系統関係におけるタクソンサンプリングの影響:紅藻類と灰色藻類のどちらが初期分岐系統なのか?2023

    • Author(s)
      磯貝龍邑, 原田亮, 中山卓郎, 稲垣祐司
    • Organizer
      日本共生生物学会第7回大会
    • Related Report
      2023 Annual Research Report
  • [Presentation] クレン古細菌におけるPCNA複合体の進化2023

    • Author(s)
      上西慧莉紗, 原田亮, 吉永真理, 稲垣祐司
    • Organizer
      日本共生生物学会第7回大会
    • Related Report
      2023 Annual Research Report
  • [Presentation] 寄生性ユーグレナ類Euglenaformis parasiticaにおける非光合成性葉緑体の存在とその機能2023

    • Author(s)
      加藤孝一朗, 南波紀昭, 稲垣祐司, 中山剛, 中山卓郎
    • Organizer
      日本植物学会第87回大会
    • Related Report
      2023 Annual Research Report
  • [Presentation] Evolution and switching of mitochondrion-localized DNA polymerases in Euglenozoa.2023

    • Author(s)
      Ryo Harada, Yoshihisa Hirakawa, Akinori Yabuki, Ensoo Kim, Euki Yazaki, Ryoma Kamikawa, Kentaro Nakano, Marek Elias, Yuji Inagaki
    • Organizer
      3rd Annual International Congress on Euglenoids 2023
    • Related Report
      2023 Annual Research Report
    • Int'l Joint Research
  • [Presentation] A non-kareniacean dinoflagellate with a haptophyte-derived plastid indicates multiple tertiary endosymbioses2023

    • Author(s)
      Kazuya Takahashi, Takuro Nakayama, Yuji Inagaki, Elisabeth Hehenberger, Mitsunori Iwataki.
    • Organizer
      IX ECOP-ISOP joint meeting 2023
    • Related Report
      2023 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Impact of taxon sampling on the relationship among Rhodophyta, Glaucophyta, and Chloroplastida inferred from nuclear gene-based phylogenomic analyses2023

    • Author(s)
      Ryu Isogai, Ryo Harada, Takuro Nakayama, Yuji Inagaki.
    • Organizer
      IX ECOP-ISOP joint meeting 2023
    • Related Report
      2023 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Repeated haptophyte endosymbioses in the dinoflagellate family Kareniaceae2023

    • Author(s)
      Yuji Inagaki, Garry Benico, Kazuya Takahashi, Ryo Harada, Inga Martinek, Kacper Maciszewski, Takuro Nakayama, Mitsunori Iwataki, Martin Kolisko, Elisabeth Hehenberger
    • Organizer
      IX ECOP-ISOP joint meeting 2023
    • Related Report
      2023 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Has the DNA polymerase of the proto-mitochondrion been retained in Discoba, Malawimonadidae, and Ancyromonadida?: a novel mitochondrion-localized DNA polymerase with the phylogenetic affinity to the alpha-proteobacterial PolI2023

    • Author(s)
      Ryo Harada, Yuji Inagaki
    • Organizer
      IX ECOP-ISOP joint meeting 2023
    • Related Report
      2023 Annual Research Report
    • Int'l Joint Research
  • [Presentation] AtLASS: A Scheme for end-to-end prediction of splice sites using attention-based bi-LSTM2023

    • Author(s)
      原田亮, 久米慶太郎, 堀江和正, 中山卓郎, 稲垣祐司, 天笠俊之
    • Organizer
      第74回バイオ情報学(SIGBIO)研究会
    • Related Report
      2023 Annual Research Report
  • [Presentation] 最尤系統樹中の2分岐の信頼性に対する新たな評価手法2023

    • Author(s)
      番場浩平, 稲垣祐司, 原田亮, 中山卓郎, 磯貝龍邑
    • Organizer
      第74回バイオ情報学(SIGBIO)研究会
    • Related Report
      2023 Annual Research Report
  • [Presentation] 真核生物の大系統:最近の研究成果から見る多様性の広がり、まとまり、今後の展望2023

    • Author(s)
      稲垣祐司
    • Organizer
      第92回寄生虫学会大会サテライトシンポジウム 原生生物学・共生生物学談話会
    • Related Report
      2022 Research-status Report
    • Invited
  • [Presentation] 寄生性の祖先から自由生活性に転じたディプロモナス類における自由生活関連タンパク質の探索2023

    • Author(s)
      厳翼,久米慶太郎,阿部一貴,矢﨑裕規,小松崎洋志,谷藤吾朗,神川龍馬,稲垣祐司,橋本哲男.
    • Organizer
      第92回寄生虫学会大会
    • Related Report
      2022 Research-status Report
  • [Presentation] Serial secondary and serial tertiary endosymbioses in dinoflagellates2023

    • Author(s)
      Yuji Inagaki
    • Organizer
      ICG Seminar, Dalhousie University
    • Related Report
      2022 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] Recent progress in resolving the diversity and evolution of deep eukaryotic phylogeny.2023

    • Author(s)
      Yuji Inagaki
    • Organizer
      ISEP2023
    • Related Report
      2022 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] A factor that hinders the accurate phylogenetic inferences: The monophyly of Archaeplastida as a case study.2022

    • Author(s)
      Yuji Inagaki
    • Organizer
      EPCC-CCS Joint Workshop
    • Related Report
      2022 Research-status Report
    • Int'l Joint Research
  • [Presentation] Endosymbiotic origin of the DNA polymerase localized in euglenid plastids.2022

    • Author(s)
      Ryo Harada, Marek Elias, Yuji Inagaki.
    • Organizer
      2nd Annual International Congress of Euglenids
    • Related Report
      2022 Research-status Report
    • Int'l Joint Research
  • [Presentation] ユーグレナ類はピラミモナス緑藻由来の色素体局在DNAポリメラーゼをもつ2022

    • Author(s)
      原田亮, Marek Elias, 稲垣祐司
    • Organizer
      第81回日本寄生虫学会東日本支部大会・日本共生生物学会第6回大会
    • Related Report
      2022 Research-status Report
  • [Presentation] 新奇ミトコンドリア局在DNAポリメラーゼが示唆するマラウィモナス類、アンキロモナス類、ディスコバ類の近縁性と真核生物のルート2022

    • Author(s)
      原田亮,Marek Elias,中野健太郎,白鳥隆志,矢吹彬憲,Ensoo Kim,石田健一郎,稲垣祐司.
    • Organizer
      第81回日本寄生虫学会東日本支部大会・日本共生生物学会第6回大会
    • Related Report
      2022 Research-status Report
  • [Presentation] Nucleomorph genomes of green-colored dinoflagellates.2022

    • Author(s)
      Yuji Inagaki, Takuro Nakayama, Takashi Kawakubo, Eriko Matsuo, Kazauya Takahashi, Mitsumori Iwataki.
    • Organizer
      21st Symposium of the International Society of Endocytobiology
    • Related Report
      2022 Research-status Report
    • Int'l Joint Research
  • [Presentation] アピコンプレクサとその近縁系統におけるミトコンドリア局在DNAポリメラーゼの多様性と起源の解明2022

    • Author(s)
      原田亮, 稲垣祐司
    • Organizer
      第91回日本寄生虫学会
    • Related Report
      2022 Research-status Report
  • [Presentation] 緑色渦鞭毛藻Lepidodinium chlorophorumにおけるヌクレオモルフゲノムの存在検証2022

    • Author(s)
      中山卓郎, 稲垣祐司
    • Organizer
      日本藻類学会第46回大会
    • Related Report
      2021 Research-status Report
  • [Presentation] 緑色渦鞭毛藻3種のペディノ藻由来色素体ゲノム間での共通性と特異性2021

    • Author(s)
      松尾恵梨子, 森田幸之介, 中山卓郎, 皿井千裕, 高橋和也, 岩滝光儀, 稲垣祐司
    • Organizer
      日本共生学会第5回大会
    • Related Report
      2021 Research-status Report
  • [Presentation] Microheriella maris units Archaeplastida and Cryptista in phylogenomics2021

    • Author(s)
      Euki Yazaki, Akinori Yabuki, Ayaka Imaizumi, Keitaro Kume, Tetsuo Hashimoto, Yuji Inagaki
    • Organizer
      Asican Congress of Protistology IV
    • Related Report
      2021 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] Single-cell transcriptome data from diverse euglenids revised the evolution of mitochondrion-localized DNA polymerase in Euglenozoa2021

    • Author(s)
      Ryo Harada, Yuji Inagaki
    • Organizer
      International Congress on Euglenids 2021
    • Related Report
      2021 Research-status Report
    • Int'l Joint Research
  • [Presentation] 古細菌SMC関連タンパク質ClsNとSphは同一の新規SMCタンパクサブファミリーから派生した2021

    • Author(s)
      吉永真理, 稲垣祐司
    • Organizer
      日本微生物生態学会第34回大会
    • Related Report
      2021 Research-status Report
  • [Presentation] Draft nucleomorph genome of a green-colored dinoflagellate2021

    • Author(s)
      Yuji Inagaki
    • Organizer
      ISEP Online Seminar Series on Protist Genomics, Diversity, and Evolution
    • Related Report
      2021 Research-status Report
    • Int'l Joint Research
  • [Presentation] 新奇ミトコンドリア局在DNAポリメラーゼは新たな真核生物高次系統群を示唆するか?2020

    • Author(s)
      原田亮,中野賢太郎,矢吹彬憲,白鳥峻志,Ensoo Kim,稲垣祐司
    • Organizer
      第17回原生生物・寄生虫・進化セミナー
    • Related Report
      2020 Research-status Report
  • [Presentation] Time-course analysis of gene expression of a benthic protist during exposure to titanium dioxide nanoscale particles2020

    • Author(s)
      石谷佳之,氏家由利香,Caterina Ciacci,Frontalini Fabrizio,稲垣祐司
    • Organizer
      JpGU-AGU Joint Meeting 2020: Virtual
    • Related Report
      2020 Research-status Report
    • Int'l Joint Research
  • [Presentation] 外洋性ディノフィシス目渦鞭毛藻2種に見られる共生シアノバクテリアのゲノム解析2020

    • Author(s)
      中山卓郎,野村真未,高野義人,柴小菊,稲葉一男,谷藤吾朗,稲垣祐司,河田雅圭
    • Organizer
      日本植物学会第84回大会
    • Related Report
      2020 Research-status Report
  • [Presentation] キネトプラスチダ類及びディプロネマ類に特異的なミトコンドリア局在DNAポリメラーゼはファージ起源である2020

    • Author(s)
      原田亮,稲垣祐司
    • Organizer
      日本共生生物学会第4回大会
    • Related Report
      2020 Research-status Report
  • [Presentation] 真核生物におけるSMCタンパク質ファミリーの多様化と二次的欠失2020

    • Author(s)
      吉永真理,稲垣祐司
    • Organizer
      日本共生生物学会第4回大会
    • Related Report
      2020 Research-status Report
  • [Presentation] エンドヘレア太陽虫Microheliella marisの系統的位置とミトコンドリアゲノム.2020

    • Author(s)
      矢吹彬憲, 矢﨑裕規, 今泉彩香, 白鳥峻志, 久米慶太郎, 橋本哲男, 稲垣祐司
    • Organizer
      日本藻類学会第44回大会
    • Related Report
      2019 Research-status Report
  • [Presentation] 緑色渦鞭毛藻 Oxytoxum sp. SG-436株 の共生藻痕跡核のゲノム解析.2020

    • Author(s)
      川久保卓志, 松尾恵梨子, 高橋和也, 谷藤吾朗, 岩滝光儀, 稲垣祐司
    • Organizer
      日本藻類学会第44回大会
    • Related Report
      2019 Research-status Report
  • [Presentation] ディスコバ生物群,マラウィモナス類,アンキロモナス類が保持する新奇ミトコンドリア局在DNAポリメラーゼ.2020

    • Author(s)
      原田亮, 中野賢太郎, 矢吹彬憲, 白鳥峻志, Ensoo Kim, 稲垣祐司
    • Organizer
      日本藻類学会第44回大会
    • Related Report
      2019 Research-status Report
  • [Presentation] 有孔虫の大規模分岐年代推定.2020

    • Author(s)
      石谷佳之, 矢﨑裕規, 氏家由利香, 稲垣祐司
    • Organizer
      日本古生物学会2020年大会
    • Related Report
      2019 Research-status Report
  • [Presentation] Phylogenomic analyses unveiled multiple endosymbioses of pedinophycean green algae in distantly related dinoflagellates.2019

    • Author(s)
      Yuji Inagaki
    • Organizer
      2019 CCS-EPCC Workshop
    • Related Report
      2019 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] フィロジェノミック解析により推測されたMicroheliella marisの系統的位置.2019

    • Author(s)
      矢﨑裕規, 今泉彩香, 久米慶太郎, 白鳥峻志, 橋本哲男, 矢吹彬憲, 石田健一郎, 稲垣祐司
    • Organizer
      第3回日本共生学会大会
    • Related Report
      2019 Research-status Report
  • [Presentation] 有孔虫Ammonia beccariiのミトコンドリアに局在するDNA分子群.2019

    • Author(s)
      石谷佳之, 久米慶太郎, 稲垣祐司.
    • Organizer
      第3回日本共生学会大会
    • Related Report
      2019 Research-status Report
  • [Presentation] 真核生物におけるSMCタンパクファミリーの多様化と二次的喪失.2019

    • Author(s)
      吉永真理, 稲垣祐司
    • Organizer
      第52回日本原生生物学会大会
    • Related Report
      2019 Research-status Report
  • [Presentation] ユーグレノゾアにおけるミトコンドリア局在DNAポリメラーゼの進化.2019

    • Author(s)
      原田亮, 平川泰久, 矢吹彬憲, 柏山祐一郎, 丸山萌, 大沼亮, Vlademir Hampl, 谷藤吾朗, 稲垣祐司
    • Organizer
      第52回日本原生生物学会大会
    • Related Report
      2019 Research-status Report
  • [Presentation] ゼロから始める大規模分子系統解析.2019

    • Author(s)
      矢﨑裕規, 稲垣祐司
    • Organizer
      第52回日本原生生物学会大会
    • Related Report
      2019 Research-status Report
    • Invited
  • [Presentation] 翻訳終結因子Cドメインにみられる部分的欠失の進化とタンパク質機能・構造に与える影響.2019

    • Author(s)
      上原忠晃, 栢沼愛, 重田育照, 稲垣祐司
    • Organizer
      第52回日本原生生物学会大会
    • Related Report
      2019 Research-status Report
  • [Presentation] Dinoflagellates as the model for the evolution of eukaryotic cells and genomes.2019

    • Author(s)
      Yuji Inagaki
    • Organizer
      National Taiwan University-University of Tsukuba Bilateral Symposium on Life Science
    • Related Report
      2019 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] ATG12-ATG5における非共有結合非依存化の普遍性について.2019

    • Author(s)
      矢﨑裕規, 坂本寛和, 上原忠晃, 稲垣祐司, 山本林, 水島昇
    • Organizer
      第92回日本生化学会大会
    • Related Report
      2019 Research-status Report
  • [Presentation] Re-exploration of the protein performing plant-type C-to-U RNA editing in diverse eukaryotes.2019

    • Author(s)
      Yuki Nishimura, Nagisa Sato, Yoshiyuki Ishitani, Takashi Shiratori, Ken-ichiro Ishida, Tetsuo Hashimoto, Yuji Inagaki, Moriya Ohkuma
    • Organizer
      14th International Colloquium on Endocytobioogy and Symbiosis
    • Related Report
      2019 Research-status Report
    • Int'l Joint Research
  • [Presentation] 新奇真核微生物の探索と細胞内共生に伴う宿主ゲノムの進化:真核生物初期進化の理解に向けて.2019

    • Author(s)
      稲垣祐司
    • Organizer
      KCCセミナー
    • Related Report
      2019 Research-status Report
    • Invited
  • [Presentation] Distribution of plant-type mitochondrial C-to-U RNA editing in diverse eukaryotes.2019

    • Author(s)
      西村祐貴, 佐藤渚, 白鳥峻志, 石田健一郎, 橋本哲男, 稲垣祐司, 大熊盛也
    • Organizer
      日本進化学会第21回大会
    • Related Report
      2019 Research-status Report
  • [Presentation] A novel type of mitochondrion-localized DNA polymerase unites 'orphan eukaryotes' into a new 'super-group'.2019

    • Author(s)
      Ryo Harada, Kentaro Nakano, Akinori Yabuki, Yuji Inagaki
    • Organizer
      日本進化学会第21回大会
    • Related Report
      2019 Research-status Report
  • [Presentation] Single-cell genomics unveiled a cryptic cyanobacterial lineage with a worldwide distribution hidden by a dinoflagellate host.2019

    • Author(s)
      Takuro Nakayama, Mami Nomura, Yoshihito Takano, Kogiku Shiba, Kazuo Inaba, Goro Tanifuji, Yuji Inagaki, Masakado Kawata
    • Organizer
      CWRU-TOHOKU Joint Work Shop
    • Related Report
      2019 Research-status Report
    • Int'l Joint Research
  • [Presentation] Evolutionarily distinct gene-sets for autophagosome formation in dinoflagellate harboring diatom endosymbionts.2019

    • Author(s)
      Euki Yazaki, Tadaaki Uehara, Hirokazu Sakamoto, Tetsuo Hashimoto, Noboru Mizushima, Yuji Inagaki
    • Organizer
      VIII European Congress of Protistology
    • Related Report
      2019 Research-status Report
    • Int'l Joint Research
  • [Presentation] Phylogenomic analysis assessing the position of "orphans" including Microheliella maris.2019

    • Author(s)
      Euki Yazaki, Ayaka Imaizumi, Keitaro Kume, Takashi Shiratori, Tetsuo Hashimoto, Akinori Yabuki, Ken-ichiro Ishida, Yuji Inagaki.
    • Organizer
      VIII European Congress of Protistology
    • Related Report
      2019 Research-status Report
    • Int'l Joint Research
  • [Presentation] Genome analysis of a symbiotic nitrogen-fixing cyanobacterium in a pelagic dinoflagellate, Histioneis depressa.2019

    • Author(s)
      Takuro Nakayama, Mami Nomura, Yoshihito Takano, Kogiku Shiba, Kazuo Inaba, Goro Tanifuji, Yuji Inagaki, Masakado Kawata
    • Organizer
      VIII European Congress of Protistology
    • Related Report
      2019 Research-status Report
    • Int'l Joint Research
  • [Presentation] 有中心粒太陽虫類におけるミトコンドリアゲノムの比較解析.2019

    • Author(s)
      西村祐貴, 佐藤渚, 白鳥峻志, 石田健一郎, 橋本哲男, 稲垣祐司, 大熊盛也
    • Organizer
      日本微生物資源学会第26回大会
    • Related Report
      2019 Research-status Report
  • [Presentation] ゲノム・トランスクリプトームデータを用いて推測される真核生物の初期分岐2019

    • Author(s)
      稲垣祐司
    • Organizer
      第1回ゲノム・分子進化・構造の会
    • Related Report
      2018 Research-status Report
    • Invited
  • [Presentation] Heterotrophic side of the tree of the eukaryotic life2019

    • Author(s)
      Yuji Inagaki
    • Organizer
      Seminor in Station Biologique de Roscoff
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research / Invited

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Published: 2018-10-12   Modified: 2025-01-30  

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