The integrated multi-omics analysis of nontuberculous mycobacteria using neural network algorithms to construct a predictive model of the pathological features
Project/Area Number |
18KT0019
|
Research Category |
Grant-in-Aid for Scientific Research (B)
|
Allocation Type | Multi-year Fund |
Section | 特設分野 |
Research Field |
Complex Systems Disease Theory
|
Research Institution | Niigata University |
Principal Investigator |
|
Co-Investigator(Kenkyū-buntansha) |
阿部 貴志 新潟大学, 自然科学系, 教授 (30390628)
|
Project Period (FY) |
2018-07-18 – 2022-03-31
|
Project Status |
Completed (Fiscal Year 2021)
|
Budget Amount *help |
¥18,460,000 (Direct Cost: ¥14,200,000、Indirect Cost: ¥4,260,000)
Fiscal Year 2020: ¥6,240,000 (Direct Cost: ¥4,800,000、Indirect Cost: ¥1,440,000)
Fiscal Year 2019: ¥6,370,000 (Direct Cost: ¥4,900,000、Indirect Cost: ¥1,470,000)
Fiscal Year 2018: ¥5,850,000 (Direct Cost: ¥4,500,000、Indirect Cost: ¥1,350,000)
|
Keywords | 非結核性抗酸菌 / サイトカイン / 機械学習 / オミックス解析 / 一括学習型自己組織化マップ / 深層学習 |
Outline of Final Research Achievements |
Nontuberculous mycobacteria (NTM) are widely distributed in the environment, and the environmental exposures cause chronic pulmonary infection due to NTM. A clinical problem for the NTM pulmonary disease is that classification of pathological states is uncertain. To address the issue, in this study, we analyzed the clinical courses of patients with NTM pulmonary disease together with the pathogenic mycobacteria, and have developed a mathematical model for predicting the type of pathological states on the basis of the pathogenic mycobacteria. This research accomplishment is anticipated to help us understand clinical classification and its characteristics of the NTM pulmonary disease.
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Academic Significance and Societal Importance of the Research Achievements |
浴室や土壌に広く生息している非結核性抗酸菌 (NTM)を吸入することによって、慢性呼吸器感染症であるNTM症を発症する。近年中高年女性を中心に、NTM症患者の増加が指摘されている。その病態は不明な点が多く、診療上の課題となっている。本研究では、NTM症の起因菌からその病態を予想できる数理モデルを開発した。本研究成果によって、NTM症の診療をより円滑に行えるようになることが期待される。
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Report
(5 results)
Research Products
(99 results)
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[Journal Article] Prognostic significance of procalcitonin in small cell lung cancer.2022
Author(s)
Ichikawa K, Watanabe S, Miura S, Ohtsubo A, Shoji S, Nozaki K, Tanaka T, Saida Y, Kondo R, Hokari S, Aoki N, Ohshima Y, Koya T, Kikuchi T.
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Volume: 11
Issue: 1
Pages: 43-52
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[Journal Article] STAT3 inhibition suppresses adaptive survival of ALK-rearranged lung cancer cells through transcriptional modulation of apoptosis.2022
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Issue: 1
Pages: 11-11
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[Journal Article] Effect of Dupilumab on Depression in Asthma with Eosinophilic Chronic Rhinosinusitis in the Japanese Population.2022
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Journal Title
Int Arch Allergy Immunol.
Volume: 183
Issue: 3
Pages: 289-297
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[Journal Article] Chronic Hypercapnic Respiratory Failure in an Adult Patient with Silver-Russell Syndrome2021
Author(s)
Hakamata M, Hokari S, Ohshima Y, Kagami M, Saito S, Motoike IN, Abe T, Aoki N, Hayashi M, Watanabe S, Koya T, Kikuchi T.
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Journal Title
Internal Medicine
Volume: 60
Issue: 12
Pages: 1921-1926
DOI
NAID
ISSN
0918-2918, 1349-7235
Year and Date
2021-06-15
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Author(s)
Ueno H, Hayashi M, Nagumo S, Ichikawa K, Aoki N, Ohshima Y, Watanabe S, Koya T, Abテゥ T, Ohashi R, Ajioka Y, Kikuchi T.
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Journal Title
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Volume: 60
Issue: 7
Pages: 1077-1082
DOI
NAID
ISSN
0918-2918, 1349-7235
Year and Date
2021-04-01
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Author(s)
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Infect Control Hosp Epidemiol.
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[Journal Article] Subsequent systemic therapy for non-small cell lung cancer patients with immune checkpoint inhibitor-related interstitial lung disease.2021
Author(s)
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Transl Lung Cancer Res.
Volume: 10
Issue: 7
Pages: 3132-3143
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[Journal Article] Efficacy of the new β-D-glucan measurement kit for diagnosing invasive fungal infections, as compared with that of four conventional kits.2021
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Bamba Y, Nagano K, Moro H, Ogata H, Hakamata M, Shibata S, Koizumi T, Aoki N, Ohshima Y, Watanabe S, Nakamura T, Kobayashi S, Hoshiyama Y, Koya T, Takada T, Kikuchi T.
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PLoS One.
Volume: 16
Issue: 8
Pages: e0255172-e0255172
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[Journal Article] Optogenetic activation of DRN 5-HT neurons induced active wakefulness, not quiet wakefulness.2021
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Brain Res Bull.
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[Journal Article] The Prognostic Significance of the Continuous Administration of Anti-PD-1 Antibody via Continuation or Rechallenge After the Occurrence of Immune-Related Adverse Events.2021
Author(s)
Fujisaki T, Watanabe S, Ota T, Kushiro K, Sato Y, Takahashi M, Ohtsubo A, Shoji S, Nozaki K, Ichikawa K, Hokari S, Kondo R, Miyabayashi T, Abe T, Miura S, Tanaka H, Okajima M, Terada M, Matsumoto N, Ishida T, Iwashima A, Sato K, Yoshizawa H, Aoki N, Hayashi M, Ohshima Y, Koya T, Kikuchi T.
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Front Oncol.
Volume: 11
Pages: 704475-704475
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[Journal Article] PD-1 blockade therapy augments the antitumor effects of lymphodepletion and adoptive T cell transfer.2021
Author(s)
Takahashi M, Watanabe S, Suzuki R, Arita M, Sato K, Sato M, Sekiya Y, Abe Y, Fujisaki T, Ohtsubo A, Shoji S, Nozaki K, Ichikawa K, Kondo R, Saida Y, Hokari S, Aoki N, Hayashi M, Ohshima Y, Koya T, Kikuchi T.
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Journal Title
Cancer Immunol Immunother.
Volume: -
Issue: 6
Pages: 1357-1369
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[Journal Article] A Phase II Study of Osimertinib Combined With Platinum Plus Pemetrexed in Patients With EGFR-Mutated Advanced Non-Small-cell Lung Cancer: The OPAL Study (NEJ032C/LOGIK1801)2021
Author(s)
Asahina H, Tanaka K, Morita S, Maemondo M, Seike M, Okamoto I, Oizumi S, Kagamu H, Takahashi K, Kikuchi T, Isobe T, Sugio K, Kobayashi K.
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Journal Title
Clin Lung Cancer
Volume: 22
Issue: 2
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[Journal Article] Clinical manifestations of adult patients requiring influenza-associated hospitalization: A prospective multicenter cohort study in Japan via internet surveillance2021
Author(s)
Ishida T, Seki M, Oishi K, Tateda K, Fujita J, Kadota JI, Kawana A, Izumikawa K, Kikuchi T, Ohmagari N, Yamada M, Maruyama T, Takazono T, Miki M, Miyazaki Y, Yamazaki Y, Kakeya H, Ogawa K, Nagai H, Watanabe A.
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Journal Title
J Infect Chemother
Volume: 27
Issue: 3
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[Journal Article] Combination therapy of cisplatin with cilastatin enables an increased dose of cisplatin, enhancing its antitumor effect by suppression of nephrotoxicity2021
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Arita M, Watanabe S, Aoki N, Kuwahara S, Suzuki R, Goto S, Abe Y, Takahashi M, Sato M, Hokari S, Ohtsubo A, Shoji S, Nozaki K, Ichikawa K, Kondo R, Hayashi M, Ohshima Y, Kabasawa H, Hosojima M, Koya T, Saito A, Kikuchi T.
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[Journal Article] A prospective phase II study of multimodal prophylactic treatment for afatinib-induced adverse events in advanced non-small cell lung cancer (Niigata Lung Cancer Treatment Group 1401)2021
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Okajima M, Miura S, Watanabe S, Tanaka H, Ito K, Ishida T, Makino M, Iwashima A, Matsumoto N, Sato K, Ichikawa K, Abe T, Yoshizawa H, Kikuchi T.
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Issue: 1
Pages: 252-260
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[Journal Article] ONO-7475, a Novel AXL Inhibitor, Suppresses the Adaptive Resistance to Initial EGFR-TKI Treatment in EGFR-Mutated Non?Small Cell Lung Cancer2020
Author(s)
Okura N, Nishioka N, Yamada T, Taniguchi H, Tanimura K, Katayama Y, Yoshimura A, Watanabe S, Kikuchi T, Shiotsu S, Kitazaki T, Nishiyama A, Iwasaku M, Kaneko Y, Uchino J, Uehara H, Horinaka M, Sakai T, Tanaka K, Kozaki R, Yano S, Takayama K.
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Clinical Cancer Research
Volume: 26
Issue: 9
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[Journal Article] Distribution of Legionella species and serogroups in patients with culture-confirmed Legionella pneumonia2020
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Journal Title
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Issue: 5
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[Journal Article] Higher genome mutation rates of Beijing lineage of Mycobacterium tuberculosis during human infection2020
Author(s)
Hakamata M, Takihara H, Iwamoto T, Tamaru A, Hashimoto A, Tanaka T, Kaboso SA, Gebretsadik G, Ilinov A, Yokoyama A, Ozeki Y, Nishiyama A, Tateishi Y, Moro H, Kikuchi T, Okuda S, Matsumoto S.
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[Journal Article] Frequent Germline and Somatic Single Nucleotide Variants in the Promoter Region of the Ribosomal RNA Gene in Japanese Lung Adenocarcinoma Patients2020
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Ohashi R, Umezu H, Sato A, Abテゥ T, Kondo S, Daigo K, Sato S, Hara N, Miyashita A, Ikeuchi T, Motoyama T, Kishi M, Nagaoka T, Horiuchi K, Shiga A, Okuda S, Sekiya T, Ohtsubo A, Ichikawa K, Kagamu H, Kikuchi T, Watanabe S, Tanuma JI, Schraml P, Hamakubo T, Tsuchida M, Ajioka Y.
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[Journal Article] A Cluster Analysis of Bronchial Asthma Patients with Depressive Symptoms2018
Author(s)
Seino Y, Hasegawa T, Koya T, Sakagami T, Mashima I, Shimizu N, Muramatsu Y, Muramatsu K, Suzuki E, Kikuchi T.
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Journal Title
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Volume: 57
Issue: 14
Pages: 1967-1975
DOI
NAID
ISSN
0918-2918, 1349-7235
Year and Date
2018-07-15
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[Journal Article] Taniguchi H, Yamada T, Wang R, Tanimura K, Adachi Y, Nishiyama A, Tanimoto A, Takeuchi S, Araujo LH, Boroni M, Yoshimura A, Shiotsu S, Matsumoto I, Watanabe S, Kikuchi T, Miura S, Tanaka H, Kitazaki T, Yamaguchi H, Mukae H, Uchino J, Uehara H, Takayama K, Yano S.2018
Author(s)
Taniguchi H, Yamada T, Wang R, Tanimura K, Adachi Y, Nishiyama A, Tanimoto A, Takeuchi S, Araujo LH, Boroni M, Yoshimura A, Shiotsu S, Matsumoto I, Watanabe S, Kikuchi T, Miura S, Tanaka H, Kitazaki T, Yamaguchi H, Mukae H, Uchino J, Uehara H, Takayama K, Yano S.
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Journal Title
Nat Commun.
Volume: 10
Issue: 1
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[Journal Article] In vitro activity of various antibiotics against clinical strains of Legionella species isolated in Japan.2018
Author(s)
Miyashita N, Kobayashi I, Higa F, Aoki Y, Kikuchi T, Seki M, Tateda K, Maki N, Uchino K, Ogasawara K, Kurachi S, Ishikawa T, Ishimura Y, Kanesaka I, Kiyota H, Watanabe A.
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Journal Title
J Infect Chemother.
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Issue: 5
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[Journal Article] Diagnostic predictors of Legionella pneumonia in Japan2018
Author(s)
Miyashita Naoyuki、Horita Nobuyuki、Higa Futoshi、Aoki Yosuke、Kikuchi Toshiaki、Seki Masafumi、Tateda Kazuhiro、Maki Nobuko、Uchino Kazuhiro、Ogasawara Kazuhiko、Kiyota Hiroshi、Watanabe Akira
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Journal Title
Journal of Infection and Chemotherapy
Volume: 24
Issue: 3
Pages: 159-163
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[Presentation] The Relationship Between Social Capital and Asthma Control.2019
Author(s)
A. Saito, T. Hasegawa, T. Koya, S. Nagumo, Y.Nishiyama, K. Yoshizawa, H. Ueno, Y. Kimura, M. Hayashi, Y. Shobugawa, R. Saito, T. Kikuchi.
Organizer
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[Presentation] Prognostic significance of radiologic features of pneumonitis induced by anti-PD-1 therapy.2019
Author(s)
S. Watanabe, T. Ota, M. Hayashi, H. Ishikawa, T. Miyabayashi, M. Terada, K. Sato, T. Ishida, H. Tanaka, A. Iwashima, S. Shoji, K. Nozaki, K. Ichikawa, R. Kondo, H. Yoshizawa, T. Kikuchi
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[Presentation] A phase II study evaluating continuation of EGFR-TKIs beyond progressive disease followed by the addition of CDDP+PEM+Bev2018
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The 19th World Conference on Lung Cancer
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[Book] 内科学第12版2022
Author(s)
菊地利明
Total Pages
2486
Publisher
朝倉書店
ISBN
9784254322804
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