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Identification and functional analysis of noncoding SNPs causative for genetic disorders

Research Project

Project/Area Number 18KT0024
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeMulti-year Fund
Section特設分野
Research Field Complex Systems Disease Theory
Research InstitutionKyoto University (2020)
Kyushu University (2018-2019)

Principal Investigator

OKi Shinya  京都大学, 医学研究科, 特定准教授 (90452713)

Co-Investigator(Kenkyū-buntansha) 竹本 龍也  徳島大学, 先端酵素学研究所(オープンイノベ), 教授 (30443899)
沢津橋 俊  徳島大学, 先端酵素学研究所(オープンイノベ), 特任准教授 (70535103)
Project Period (FY) 2018-07-18 – 2021-03-31
Project Status Completed (Fiscal Year 2020)
Budget Amount *help
¥18,590,000 (Direct Cost: ¥14,300,000、Indirect Cost: ¥4,290,000)
Fiscal Year 2020: ¥6,630,000 (Direct Cost: ¥5,100,000、Indirect Cost: ¥1,530,000)
Fiscal Year 2019: ¥6,240,000 (Direct Cost: ¥4,800,000、Indirect Cost: ¥1,440,000)
Fiscal Year 2018: ¥5,720,000 (Direct Cost: ¥4,400,000、Indirect Cost: ¥1,320,000)
KeywordsGWAS / SNP / ChIP-seq / 転写因子 / Noncoding SNP
Outline of Final Research Achievements

GWAS and other case-control studies have identified many disease-associated single nucleotide polymorphisms (marker SNPs). However, since about 90% of disease-associated marker SNPs are located in non-coding regions, it is very difficult to understand the causal relationship between SNPs, which genes they affect, and why they lead to diseases. In this study, we focused on SNPs in non-coding regions that are associated with diseases, and aimed to elucidate the disease process caused by them. As a result, we identified a region where multiple transcription factors involved in immunity and inflammation bind within the linkage disequilibrium region of disease-related SNPs in the non-coding region.

Academic Significance and Societal Importance of the Research Achievements

本研究はこれまで見過ごされてきたnon-coding領域のSNPに着目し、転写因子結合情報をフル活用してそのcausal SNPの同定を目指すため、統計遺伝学を駆使した従来のfine-mappingとは大きく異なるアプローチである。本研究の成果は罹患リスクを予測するためのマーカとしてそのまま用いることができるため、coding領域に偏っていた従来の予測精度を飛躍的に引き上げることが期待される。

Report

(4 results)
  • 2020 Annual Research Report   Final Research Report ( PDF )
  • 2019 Research-status Report
  • 2018 Research-status Report
  • Research Products

    (75 results)

All 2021 2020 2019 2018 Other

All Journal Article (26 results) (of which Int'l Joint Research: 8 results,  Peer Reviewed: 25 results,  Open Access: 21 results) Presentation (42 results) (of which Int'l Joint Research: 3 results,  Invited: 36 results) Book (4 results) Remarks (1 results) Patent(Industrial Property Rights) (2 results)

  • [Journal Article] Paternal age affects offspring via an epigenetic mechanism involving REST/NRSF.2021

    • Author(s)
      Yoshizaki Kaichi, Kimura Ryuichi, Kobayashi Hisato, Oki Shinya, Kikkawa Takako, Mai Lingling, Koike Kohei, Mochizumi Kentaro, Inada Hitoshi, Matsui Yasuhisa, Kono Tomohiro, Osumi Noriko
    • Journal Title

      EMBO Reports

      Volume: 22(2) Issue: 2

    • DOI

      10.15252/embr.202051524

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] A defined glycosylation regulatory network modulates total glycome dynamics during pluripotency state transition2021

    • Author(s)
      Pecori Federico、Yokota Ikuko、Hanamatsu Hisatoshi、Miura Taichi、Ogura Chika、Ota Hayato、Furukawa Jun-ichi、Oki Shinya、Yamamoto Kazuo、Yoshie Osamu、Nishihara Shoko
    • Journal Title

      Scientific Reports

      Volume: 11 Issue: 1 Pages: 1276-1276

    • DOI

      10.1038/s41598-020-79666-4

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] DDBJ Data Analysis Challenge: a machine learning competition to predict <i>Arabidopsis</i> chromatin feature annotations from DNA sequences2020

    • Author(s)
      Eli Kaminuma, Yukino Baba, Masahiro Mochizuki, Hirotaka Matsumoto, Haruka Ozaki, Toshitsugu Okayama, Takuya Kato, Shinya Oki, Takatomo Fujisawa, Yasukazu Nakamura, Masanori Arita, Osamu Ogasawara, Hisashi Kashima, Toshihisa Takagi
    • Journal Title

      Genes & Genetic Systems

      Volume: 95 Issue: 1 Pages: 43-50

    • DOI

      10.1266/ggs.19-00034

    • NAID

      130007834264

    • ISSN
      1341-7568, 1880-5779
    • Year and Date
      2020-02-01
    • Related Report
      2019 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] FTO Demethylates Cyclin D1 mRNA and Controls Cell-Cycle Progression2020

    • Author(s)
      Hirayama Mayumi、Wei Fan-Yan、Chujo Takeshi、Oki Shinya、Yakita Maya、Kobayashi Daiki、Araki Norie、Takahashi Nozomu、Yoshida Ryoji、Nakayama Hideki、Tomizawa Kazuhito
    • Journal Title

      Cell Reports

      Volume: 31 Issue: 1 Pages: 107464-107464

    • DOI

      10.1016/j.celrep.2020.03.028

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Genetic loss of importin α4 causes abnormal sperm morphology and impacts on male fertility in mouse2020

    • Author(s)
      Miyamoto Yoichi、Sasaki Mitsuho、Miyata Haruhiko、Monobe Yoko、Nagai Masahiro、Otani Mayumi、Whiley Penny A. F.、Morohoshi Akane、Oki Shinya、Matsuda Junichiro、Akagi Ken‐ichi、Adachi Jun、Okabe Masaru、Ikawa Masahito、Yoneda Yoshihiro、Loveland Kate L.、Oka Masahiro
    • Journal Title

      The FASEB Journal

      Volume: 34 Issue: 12 Pages: 16224-16242

    • DOI

      10.1096/fj.202000768rr

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Point mutagenesis in mouse reveals contrasting pathogenetic effects between MEN2B‐ and Hirschsprung disease‐associated missense mutations of the RET gene2020

    • Author(s)
      Nakatani Taichi、Iwasaki Mitsuhiro、Yamamichi Atsuhiro、Yoshioka Yuta、Uesaka Toshihiro、Bitoh Yuko、Maeda Kosaku、Fukumoto Takumi、Takemoto Tatsuya、Enomoto Hideki
    • Journal Title

      Development, Growth & Differentiation

      Volume: 62 Issue: 4 Pages: 214-222

    • DOI

      10.1111/dgd.12664

    • NAID

      120006863591

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] High resolution spatial transcriptome analysis by photo-isolation chemistry2020

    • Author(s)
      Honda Mizuki、Oki Shinya、Harada Akihito、Maehara Kazumitsu、Tanaka Kaori、Meno Chikara、Ohkawa Yasuyuki
    • Journal Title

      bioRxiv

      Volume: -

    • DOI

      10.1101/2020.03.20.000984

    • Related Report
      2019 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Sox2 gene regulation via the D1 enhancer in embryonic neural tube and neural crest by the combined action of SOX2 and ZIC22020

    • Author(s)
      Iida Hideaki、Furukawa Yoko、Teramoto Machiko、Suzuki Hitomi、Takemoto Tatsuya、Uchikawa Masanori、Kondoh Hisato
    • Journal Title

      Genes to Cells

      Volume: In press Issue: 4 Pages: 242-256

    • DOI

      10.1111/gtc.12753

    • Related Report
      2019 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] The absence of SOX2 in the anterior foregut alters the esophagus into trachea and bronchi in both epithelial and mesenchymal components2020

    • Author(s)
      Teramoto Machiko、Sugawara Ryo、Minegishi Katsura、Uchikawa Masanori、Takemoto Tatsuya、Kuroiwa Atsushi、Ishii Yasuo、Kondoh Hisato
    • Journal Title

      Biology Open

      Volume: 9 Pages: 048728-048728

    • DOI

      10.1242/bio.048728

    • NAID

      120006859990

    • Related Report
      2019 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] How do we sense phosphate to regulate serum phosphate level?2020

    • Author(s)
      Seiji Fukumoto, Yuichi Takashi, Maria Tsoumpra, Shun Sawatsubashi, Toshio Matsumoto
    • Journal Title

      Journal of Bone and Mineral Metabolism

      Volume: 38 Issue: 1 Pages: 1-6

    • DOI

      10.1007/s00774-019-01066-0

    • Related Report
      2019 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Dystrobrevin alpha gene is a direct target of the vitamin D receptor in muscle2020

    • Author(s)
      Tsoumpra Maria K、Sawatsubashi Shun、Imamura Michihiro、Fukumoto Seiji、Takeda Shin’ichi、Matsumoto Toshio、Aoki Yoshitsugu
    • Journal Title

      Journal of Molecular Endocrinology

      Volume: 64 Issue: 3 Pages: 195-208

    • DOI

      10.1530/jme-19-0229

    • Related Report
      2019 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Paternal age affects offspring’s behavior possibly via an epigenetic mechanism recruiting a transcriptional repressor REST2019

    • Author(s)
      Yoshizaki, K., Koike, T., Kimura, R., Kikkawa, T., Oki, S., Koike, K., Mochizuki, K., Inada, H., Kobayashi, H., Matsui, Y., Kono, T., Osumi, N.
    • Journal Title

      bioRxiv

      Volume: -

    • DOI

      10.1101/550095

    • Related Report
      2019 Research-status Report
    • Open Access
  • [Journal Article] Cis-control of Six1 expression in neural crest cells during craniofacial development2019

    • Author(s)
      Wu Zhaoming, Rao Yanxia, Zhang Sushan, Kim Eun-Jung, Oki Shinya, Harada Hidemitsu, Cheung Martin, Jung Han-Sung
    • Journal Title

      Developmental Dynamics

      Volume: 248 Issue: 12 Pages: 1264-1272

    • DOI

      10.1002/dvdy.109

    • Related Report
      2019 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Restriction of PD-1 function by cis-PD-L1/CD80 interactions is required for optimal T cell responses2019

    • Author(s)
      Sugiura Daisuke、Maruhashi Takumi、Okazaki Il-mi、Shimizu Kenji、Maeda Takeo K.、Takemoto Tatsuya、Okazaki Taku
    • Journal Title

      Science

      Volume: 364 Issue: 6440 Pages: 558-566

    • DOI

      10.1126/science.aav7062

    • Related Report
      2019 Research-status Report
    • Peer Reviewed
  • [Journal Article] Hoxa13 regulates expression of common Hox target genes involved in cartilage development to coordinate the expansion of the autopodal anlage2019

    • Author(s)
      Yamamoto Shiori、Uchida Yuji、Ohtani Tomomi、Nozaki Erina、Yin Chunyang、Gotoh Yoshihiro、Yakushiji‐Kaminatsui Nayuta、Higashiyama Tetsuya、Suzuki Takamasa、Takemoto Tatsuya、Shiraishi Yo‐ichi、Kuroiwa Atsushi
    • Journal Title

      Development, Growth & Differentiation

      Volume: 61 Issue: 3 Pages: 228-251

    • DOI

      10.1111/dgd.12601

    • NAID

      120006941124

    • Related Report
      2019 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Zygote Electroporation for CRISPR/Cas9 Delivery to Generate Genetically Modified Mice2019

    • Author(s)
      Takemoto Tatsuya
    • Journal Title

      Methods in Molecular Biology

      Volume: 2050 Pages: 121-126

    • DOI

      10.1007/978-1-4939-9740-4_13

    • ISBN
      9781493997398, 9781493997404
    • Related Report
      2019 Research-status Report
    • Peer Reviewed
  • [Journal Article] Activation of unliganded FGF receptor by extracellular phosphate potentiates proteolytic protection of FGF23 by its O-glycosylation2019

    • Author(s)
      Takashi Y, Kosako H, Sawatsubashi S, Kinoshita Y, Ito N, Tsoumpra MK, Nangaku M, Abe M, Matsuhisa M, Kato S, Matsumoto T, Fukumoto S
    • Journal Title

      Proc Natl Acad Sci U S A

      Volume: 116 Issue: 23 Pages: 11418-11427

    • DOI

      10.1073/pnas.1815166116

    • NAID

      120006715989

    • Related Report
      2019 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Update of the FANTOM web resource: expansion to provide additional transcriptome atlases2019

    • Author(s)
      Lizio Marina、Abugessaisa Imad、Noguchi Shuhei、Kondo Atsushi、Hasegawa Akira、Hon Chung Chau、de Hoon Michiel、Severin Jessica、Oki Shinya、Hayashizaki Yoshihide、Carninci Piero、Kasukawa Takeya、Kawaji Hideya
    • Journal Title

      Nucleic Acids Research

      Volume: 47 Issue: D1 Pages: D752-D758

    • DOI

      10.1093/nar/gky1099

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] The Function of the Vitamin D Receptor and a Possible Role of Enhancer RNA in Epigenomic Regulation of Target Genes: Implications for Bone Metabolism2019

    • Author(s)
      Sawatsubashi Shun、Nishimura Koichi、Mori Jinichi、Kouzmenko Alexander、Kato Shigeaki
    • Journal Title

      Journal of Bone Metabolism

      Volume: 26 Issue: 1 Pages: 3-12

    • DOI

      10.11005/jbm.2019.26.1.3

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Protocol for CRISPR/Cas9-based knock-in using the VIKING method2019

    • Author(s)
      Joko Yudai、Sugano Shigeo S.、Fukumoto Seiji、Matsumoto Toshio、Sawatsubashi Shun
    • Journal Title

      Protocol Exchange

      Volume: 01-24

    • DOI

      10.1038/protex.2019.010

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] ChIP-Atlas: a data-mining suite powered by full integration of public ChIP-seq data.2018

    • Author(s)
      Shinya Oki, Tazro Ohta, Go Shioi, Hideki Hatanaka, Osamu Ogasawara, Yoshihiro Okuda, Hideya Kawaji, Ryo Nakaki, Jun Sese, Chikara Meno
    • Journal Title

      EMBO reports

      Volume: 19 Issue: 12

    • DOI

      10.15252/embr.201846255

    • NAID

      120006649027

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Repression of somatic genes by selective recruitment of HDAC3 by BLIMP1 is essential for mouse primordial germ cell fate determination2018

    • Author(s)
      Mochizuki Kentaro, Hayashi Yohei, Sekinaka Tamotsu, Otsuka Kei, Ito-Matsuoka Yumi, Kobayashi Misato, Oki Shinya, Takehara Asuka, Kono Tomohiro, Osumi Noriko, Matsui Yasuhisa
    • Journal Title

      Cell Reports

      Volume: 24 Issue: 10 Pages: 2682-2693

    • DOI

      10.1016/j.celrep.2018.07.108

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] LSD1 mediates metabolic reprogramming by glucocorticoids during myogenic differentiation2018

    • Author(s)
      K. Anan, S. Hino, N. Shimizu, A. Sakamoto, K. Nagaoka, R. Takase, K. Kohrogi, H. Araki, Y. Hino, S. Usuki, S. Oki, H. Tanaka, K. Nakamura, F. Endo, and M. Nakao
    • Journal Title

      Nucleic Acids Res.

      Volume: 18 Issue: 11 Pages: 5441-5454

    • DOI

      10.1093/nar/gky234

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Generation of PDX-1 mutant porcine blastocysts by introducing CRISPR/Cas9-system into porcine zygotes via electroporation2018

    • Author(s)
      Tanihara Fuminori、Hirata Maki、Nguyen Nhien T.、Le Quynh A.、Hirano Takayuki、Takemoto Tatsuya、Nakai Michiko、Fuchimoto Dai-ichiro、Otoi Takeshige
    • Journal Title

      Animal Science Journal

      Volume: 90 Issue: 1 Pages: 55-61

    • DOI

      10.1111/asj.13129

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Generation of a TP53-modified porcine cancer model by CRISPR/Cas9-mediated gene modification in porcine zygotes via electroporation2018

    • Author(s)
      Tanihara Fuminori、Hirata Maki、Nguyen Nhien Thi、Le Quynh Anh、Hirano Takayuki、Takemoto Tatsuya、Nakai Michiko、Fuchimoto Dai-ichiro、Otoi Takeshige
    • Journal Title

      PLOS ONE

      Volume: 13 Issue: 10 Pages: e0206360-e0206360

    • DOI

      10.1371/journal.pone.0206360

    • NAID

      120006548638

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Effects of voltage strength during electroporation on the development and quality of in vitro-produced porcine embryos.2018

    • Author(s)
      Nishio K, Tanihara F, Nguyen TV, Kunihara T, Nii M, Hirata M, Takemoto T, Otoi T.
    • Journal Title

      Reprod Domest Anim.

      Volume: 53 Issue: 2 Pages: 313-318

    • DOI

      10.1111/rda.13106

    • NAID

      120007099364

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Open Access
  • [Presentation] 空間的な遺伝子発現制御のしくみを探る2021

    • Author(s)
      沖 真弥
    • Organizer
      第85回日本循環器学会学術集会
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] Data-driven and technical approaches to understand spatial gene regulation2020

    • Author(s)
      沖 真弥
    • Organizer
      第43回日本分子生物学会年会
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] ChIP-Atlas: 公共 ChIP-seq データを利活用できる2020

    • Author(s)
      沖 真弥
    • Organizer
      第43回日本分子生物学会年会
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] ChIP-seqビッグデータを統合解析し、薬剤の作用機序解明に迫る2020

    • Author(s)
      沖 真弥
    • Organizer
      京都大学「医学領域」産学連携推進機構/一般社団法人芝蘭会 産学情報交流会
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] ChIP-Atlas の使い方と使われ方2020

    • Author(s)
      沖 真弥
    • Organizer
      第9回生命医薬情報学連合大会 (IIBMP2020)
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] 空間的な遺伝子発現制御のしくみを探る2020

    • Author(s)
      沖 真弥
    • Organizer
      第9回生命医薬情報学連合大会 (IIBMP2020)
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] 遺伝子発現の時空間的な制御のしくみ2020

    • Author(s)
      沖 真弥
    • Organizer
      KBC第4回勉強会
    • Related Report
      2019 Research-status Report
    • Invited
  • [Presentation] Data-driven and technical approaches to understand spatial gene regulation2020

    • Author(s)
      沖 真弥
    • Organizer
      WPI-IIIS Seminar
    • Related Report
      2019 Research-status Report
    • Invited
  • [Presentation] Data-driven and technical approaches to understand spatial gene regulation2020

    • Author(s)
      沖 真弥
    • Organizer
      BDR seminar in Kobe
    • Related Report
      2019 Research-status Report
    • Invited
  • [Presentation] 公共ChIP-seqデータをフル活用し、遺伝性疾患の解明や創薬に挑む2019

    • Author(s)
      沖 真弥
    • Organizer
      次世代脳プロジェクト冬のシンポジウム2019
    • Related Report
      2019 Research-status Report
  • [Presentation] ChIP-Atlas: 公共 ChIP-seq データを利活用できる2019

    • Author(s)
      沖 真弥
    • Organizer
      第42回日本分子生物学会年会
    • Related Report
      2019 Research-status Report
    • Invited
  • [Presentation] 位置情報と遺伝子発現とその仕組み2019

    • Author(s)
      沖 真弥
    • Organizer
      新学術領域「個性創発脳」若手の会・技術支援講習会
    • Related Report
      2019 Research-status Report
    • Invited
  • [Presentation] ChIP-Altasにおけるサンプルメタデータのキュレーションと、その爆速化2019

    • Author(s)
      沖 真弥
    • Organizer
      Annotathon 2019
    • Related Report
      2019 Research-status Report
    • Invited
  • [Presentation] ChIP-Atlas: a data-mining suite powered by full integration of public ChIP-seq data2019

    • Author(s)
      Shinya Oki
    • Organizer
      Lecture in College of Dentistry, Yonsei University
    • Related Report
      2019 Research-status Report 2018 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] 特定領域の発現情報を光照射で取り出す技術2019

    • Author(s)
      沖 真弥
    • Organizer
      JST新技術説明会
    • Related Report
      2019 Research-status Report
    • Invited
  • [Presentation] ChIP-Atlasをつないで使う2019

    • Author(s)
      沖 真弥
    • Organizer
      トーゴーの日シンポジウム2019
    • Related Report
      2019 Research-status Report
    • Invited
  • [Presentation] High resolution spatial transcriptomics method by photo-isolation chemistry2019

    • Author(s)
      Shinya Oki, Mizuki Honda, Akihito Harada, Kazumitsu Maehara, Kaori Tanaka, and Yasuyuki Ohkawa
    • Organizer
      EMBO/EMBL Symposium: Multiomics to Mechanisms - Challenges in Data Integration
    • Related Report
      2019 Research-status Report
    • Int'l Joint Research
  • [Presentation] ChIP-Atlas: 既報ChIP-seqデータの統合データベース2019

    • Author(s)
      沖 真弥
    • Organizer
      統合データベース講習会:AJACS番町3
    • Related Report
      2019 Research-status Report
    • Invited
  • [Presentation] ChIP-Atlas: 既報ChIP-seqデータの統合データベース2019

    • Author(s)
      沖 真弥
    • Organizer
      日本プロテオーム学会2019年大会
    • Related Report
      2019 Research-status Report
    • Invited
  • [Presentation] 公共ChIP-seqデータの利活用術2019

    • Author(s)
      沖 真弥
    • Organizer
      国立精神・神経医療研究センター セミナー
    • Related Report
      2019 Research-status Report
    • Invited
  • [Presentation] 公共ChIP-seqデータの統合解析2019

    • Author(s)
      沖 真弥
    • Organizer
      京都大学 セミナー
    • Related Report
      2019 Research-status Report
    • Invited
  • [Presentation] ChIP-Atlas の使い方とその応用2019

    • Author(s)
      沖 真弥
    • Organizer
      資生堂 セミナー
    • Related Report
      2019 Research-status Report
    • Invited
  • [Presentation] 薬効の作用点となる転写因子の特定と創薬への応用2019

    • Author(s)
      沖 真弥
    • Organizer
      日本たばこ医薬総合研究所 セミナー
    • Related Report
      2019 Research-status Report
    • Invited
  • [Presentation] ゲノム編集を利用したくる病点変異導入ビタミンD受容体の機能解析2019

    • Author(s)
      沢津橋俊、横山敦、上甲裕大、松本俊夫、福本誠二
    • Organizer
      第92回日本生化学会大会
    • Related Report
      2019 Research-status Report
  • [Presentation] 栄養情報が調節するグルココルチコイド受容体の転写制御機構の解明2019

    • Author(s)
      沢津橋俊、松本俊夫、福本誠二
    • Organizer
      第37回内分泌代謝学サマーセミナー
    • Related Report
      2019 Research-status Report
  • [Presentation] 公共ChIP-seqデータをフル活用し、遺伝性疾患の解明や創薬に挑む2019

    • Author(s)
      沖 真弥
    • Organizer
      質量分析インフォマティクス研究会
    • Related Report
      2018 Research-status Report
    • Invited
  • [Presentation] 公共ChIP-seqデータの利活用術2019

    • Author(s)
      沖 真弥
    • Organizer
      新潟大学 セミナー
    • Related Report
      2018 Research-status Report
    • Invited
  • [Presentation] 公共ChIP-seqデータの利活用術2019

    • Author(s)
      沖 真弥
    • Organizer
      産総研 セミナー
    • Related Report
      2018 Research-status Report
    • Invited
  • [Presentation] 公共ChIP-seqデータの利活用術2019

    • Author(s)
      沖 真弥
    • Organizer
      全薬工業 セミナー
    • Related Report
      2018 Research-status Report
    • Invited
  • [Presentation] 公共ChIP-seqデータの利活用術2019

    • Author(s)
      沖 真弥
    • Organizer
      創価大学 セミナー
    • Related Report
      2018 Research-status Report
    • Invited
  • [Presentation] 公共ChIP-seqデータの利活用術2019

    • Author(s)
      沖 真弥
    • Organizer
      東京理科大学 セミナー
    • Related Report
      2018 Research-status Report
    • Invited
  • [Presentation] 公共ChIP-seqデータをフル活用し遺伝性疾患の解明に挑む2019

    • Author(s)
      沖 真弥
    • Organizer
      北里大学 セミナー
    • Related Report
      2018 Research-status Report
    • Invited
  • [Presentation] 公共ChIP-seqデータをフル活用し、遺伝性疾患の解明に挑む2018

    • Author(s)
      沖 真弥
    • Organizer
      JSBi 九州部会
    • Related Report
      2018 Research-status Report
    • Invited
  • [Presentation] ChIP-Atlas: 既報のChIP-seqデータをフル活用できる2018

    • Author(s)
      沖 真弥
    • Organizer
      統合データベース講習会:AJACS町田
    • Related Report
      2018 Research-status Report
    • Invited
  • [Presentation] 医工学研究ビッグデータのデーターベース構築と活用2018

    • Author(s)
      沖 真弥
    • Organizer
      東京大学 工学系研究科 医工学概論
    • Related Report
      2018 Research-status Report
    • Invited
  • [Presentation] 公共ChIP-seqデータと疾患関連SNPの統合解析2018

    • Author(s)
      沖 真弥
    • Organizer
      第41回日本分子生物学会年会
    • Related Report
      2018 Research-status Report
    • Invited
  • [Presentation] 公共ChIP-seqデータをフル活用し、遺伝性疾患の解明に挑む2018

    • Author(s)
      沖 真弥
    • Organizer
      第16回JCGGシンポジウム
    • Related Report
      2018 Research-status Report
    • Invited
  • [Presentation] ChIP-Atlas: a data-mining suite powered by full integration of public ChIP-seq data2018

    • Author(s)
      Shinya Oki
    • Organizer
      Research collaborating meeting on "Molecular mechanism of tooth development and regeneration"
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] ChIP-seqとプロテオーム:公共データをつないで使う2018

    • Author(s)
      沖 真弥、石濱泰
    • Organizer
      トーゴーの日シンポジウム2018
    • Related Report
      2018 Research-status Report
    • Invited
  • [Presentation] 公共 ChIP-seq データをフル活用し、遺伝性疾患の解明に挑む2018

    • Author(s)
      沖 真弥
    • Organizer
      九州工業大学 セミナー
    • Related Report
      2018 Research-status Report
    • Invited
  • [Presentation] 表皮・毛包の恒常性におけるビタミンD受容体の機能解析2018

    • Author(s)
      沢津橋俊、上甲裕大、松本俊夫、福本誠二
    • Organizer
      第36回内分泌代謝学サマーセミナー
    • Related Report
      2018 Research-status Report
  • [Presentation] VIKING法によるノックアウト/ノックイン細胞を用いた比較プロテオーム解析によるビタミンD受容体複合体の探索2018

    • Author(s)
      沢津橋俊、横山敦、上甲裕大、菅野茂夫、松本俊夫、福本誠二
    • Organizer
      第41回日本分子生物学会年会
    • Related Report
      2018 Research-status Report
  • [Book] 局所的かつ高深度の空間トランスクリプトーム技術ーPhoto-Isolation Chemistry2020

    • Author(s)
      沖 真弥, 本田瑞季
    • Total Pages
      4
    • Publisher
      未土社
    • Related Report
      2020 Annual Research Report
  • [Book] THE LUNG perspectives 272019

    • Author(s)
      沖 真弥, 大田達郎
    • Total Pages
      7
    • Publisher
      メディカルレビュー社
    • Related Report
      2019 Research-status Report
  • [Book] 実験医学 372019

    • Author(s)
      沖真弥, 大田達郎
    • Total Pages
      4
    • Publisher
      羊土社
    • Related Report
      2019 Research-status Report
  • [Book] 実験医学 372019

    • Author(s)
      沢津橋俊, 上甲裕大, 菅野茂夫
    • Total Pages
      7
    • Publisher
      羊土社
    • Related Report
      2019 Research-status Report
  • [Remarks] 遺伝子のスイッチ役を「見える化」-バイオビッグデータを有効活用-(九州大学プレスリリース)

    • URL

      http://www.kyushu-u.ac.jp/f/34496/18_11_09.pdf

    • Related Report
      2018 Research-status Report
  • [Patent(Industrial Property Rights)] 核酸断片及びその使用2021

    • Inventor(s)
      大川恭行, 沖 真弥, 原田哲仁
    • Industrial Property Rights Holder
      大川恭行, 沖 真弥, 原田哲仁
    • Industrial Property Rights Type
      特許
    • Industrial Property Number
      2021-025468
    • Filing Date
      2021
    • Related Report
      2020 Annual Research Report
  • [Patent(Industrial Property Rights)] オリゴヌクレオチド、オミクス解析方法及びオミクス解析用キット2019

    • Inventor(s)
      沖真弥, 大川恭行
    • Industrial Property Rights Holder
      沖真弥, 大川恭行
    • Industrial Property Rights Type
      特許
    • Industrial Property Number
      2019-094216
    • Filing Date
      2019
    • Related Report
      2019 Research-status Report

URL: 

Published: 2018-07-20   Modified: 2024-12-25  

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