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Mechanism of High-Precision Molecular Computing and its Evaluation

Research Project

Project/Area Number 19200023
Research Category

Grant-in-Aid for Scientific Research (A)

Allocation TypeSingle-year Grants
Section一般
Research Field Bioinformatics/Life informatics
Research InstitutionTokyo Institute of Technology

Principal Investigator

MURATA Satoshi  Tokyo Institute of Technology, 大学院・総合理工学研究科, 准教授 (10334533)

Co-Investigator(Kenkyū-buntansha) FUJIMOTO Kenzo  北陸先端科学技術大学院大学, マテリアルサイエンス研究科, 教授 (90293894)
FUJII Teruo  東京大学, 生産技術研究所, 教授 (30251474)
NOJIMA Takahiko  東京大学, 生産技術研究所, 助教 (00291930)
Project Period (FY) 2007 – 2009
Project Status Completed (Fiscal Year 2009)
Budget Amount *help
¥47,450,000 (Direct Cost: ¥36,500,000、Indirect Cost: ¥10,950,000)
Fiscal Year 2009: ¥12,740,000 (Direct Cost: ¥9,800,000、Indirect Cost: ¥2,940,000)
Fiscal Year 2008: ¥18,200,000 (Direct Cost: ¥14,000,000、Indirect Cost: ¥4,200,000)
Fiscal Year 2007: ¥16,510,000 (Direct Cost: ¥12,700,000、Indirect Cost: ¥3,810,000)
KeywordsDNAコンピュータ / マイクロ・ナノデバイス / 高精度セルフアセンブリ / 自己組織化
Research Abstract

In this project, aiming at realization of high-precision molecular computing, we have investigated several aspects of molecular computing system based on algorithmic self-assembly of DNA tile. 1) A simulation model capable to explain details of self-assembly process of DNA tile has been developed. 2) We found a new phenomenon called substrate-assisted self-assembly, which enables us to make a large 2D crystal on substrate surface with less error compared with conventional assembly method in free solution. We have succeeded in algorithmic self-assembly using two types of T-motif tile and applied it to fabrication of protein array. Artificial base called C^<NVK> is developed, and its usefulness to stabilize DNA nanostructures and to extend the varieties of DNA nanostructure is verified. Stepwise DNA self-assembly by using micro-fluidic device is also developed, and feasibility of bulk evaluation of DNA tile nanostructure with fluorescent measurement has been shown by the method.

Report

(4 results)
  • 2009 Annual Research Report   Final Research Report ( PDF )
  • 2008 Annual Research Report
  • 2007 Annual Research Report
  • Research Products

    (107 results)

All 2010 2009 2008 2007 Other

All Journal Article (34 results) (of which Peer Reviewed: 30 results) Presentation (60 results) Book (6 results) Remarks (3 results) Patent(Industrial Property Rights) (4 results) (of which Overseas: 1 results)

  • [Journal Article] Fujimoto Photoreversible DNA end capping for the formation of hairpin sutuctures2010

    • Author(s)
      Y. Yoshimura, H. Okada, K.
    • Journal Title

      Organic & Biomolecular Chemistry

      Pages: 1523-526

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Photoreversible DNA end capping for the formation of hairpin sutuctures2010

    • Author(s)
      Y.Yoshimura, H.Okada, K.Fujimoto
    • Journal Title

      Organic & Biomolecular Chemistry

      Pages: 1523-1526

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Substrate-assisted assembly of interconnected single duplex DNA nanosutructures Angewandte Chemie2009

    • Author(s)
      S. Hamada, S. Murata
    • Journal Title

      Int. Ed. 48

      Pages: 6820-6823

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Precise Simulation Model for DNA Tile Self-Assembly IEEE Transactions on Nanotechnology2009

    • Author(s)
      K. Fujibayashi, S. Murata
    • Journal Title

      VOL.8,NO.3

      Pages: 361-368

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Error suppression mechanisms for DNA tile self-assembly and their simulation2009

    • Author(s)
      K. Fujibayashi, D. Zhang, E. Winfree, S. Murata
    • Journal Title

      Natural Computing Vol.8,No.3

      Pages: 589-612

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] A new approach for reversible RNA photocrosslinking reaction: application to sequence-specific RNA selection2009

    • Author(s)
      Y. Yoshimura, T. Ohtake, Okada, K. Fujimoto
    • Journal Title

      ChemBioChem

      Pages: 1473-1476

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] DNA分子を素材とするナノ構造の作成技術2009

    • Author(s)
      村田智
    • Journal Title

      化学工業 21916

      Pages: 1-5

    • Related Report
      2009 Final Research Report
  • [Journal Article] Substrate-assisted assembly of interconnected single duplex DNA nanosutructures2009

    • Author(s)
      S.Hamada, S.Murata
    • Journal Title

      Angewandte Chemie (Int.Ed.) 48

      Pages: 6820-6823

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] DNA分子を素材とするナノ構造の作成技術2009

    • Author(s)
      村田智
    • Journal Title

      化学工業 60-1

      Pages: 1-5

    • Related Report
      2009 Annual Research Report
  • [Journal Article] A new approach for reversible RNA photocrosslinking reaction : application to sequence-specific RNA selection2009

    • Author(s)
      Y.Yoshimura, T.Ohtake, H.Okada, K.Fujioto
    • Journal Title

      ChemBioChem

      Pages: 1473-1476

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Precise Simulation Model for DNA Tile Self-Assembly2009

    • Author(s)
      K. Fujibayashi, S. Murata
    • Journal Title

      IEEE Transactions on Nanotechnology (印刷中)

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Error suppression mechanisms for DNA tile self-assembly and their simulation2009

    • Author(s)
      K. Fujibayashi, D. Zhang, E. Winfree, S. Murata
    • Journal Title

      Natural Computing (印刷中)

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Stepwise Assembly of DNA Tile on Surfaces2008

    • Author(s)
      Kotaro Somei, Shohei Kaneda, Teruo Fujii, Satoshi Murata
    • Journal Title

      Lecture Notes on Computer Science 4848

      Pages: 182-190

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Toward Reliable Algorithmic Self-Assembly of DNA Tiles2008

    • Author(s)
      K. Fujibayashi, R. Hariadi, S. Park, E. Winfree, S. Murata
    • Journal Title

      A Fixed-Width Cellular Automaton Pattern NanoLetters 40762

      Pages: 1791-7

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] T-motif: A Novel Non-crossover Motif for DNA Nanostructures Proc. Foundation of NanoScience2008

    • Author(s)
      S. Hamada, S. Murata
    • Journal Title

      FNANO 2008

      Pages: 163-163

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Hiroshi Kimura and Teruo Fujii Polymerase chain reaction-based molecular logic gate coupled with cell-free transcription-translation as a reporter2008

    • Author(s)
      Takahiko Nojima*, Takatoki Yamamoto, Hiroshi Kimura, Teruo Fujii
    • Journal Title

      Chemical Communications

      Pages: 3771-3773

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Cell-free protein synthesis conducted by template DNA with repetitive sequence2008

    • Author(s)
      Takahiko Nojima*, Hiroshi Kimura, Teruo Fujii
    • Journal Title

      Chemistry Letters

      Pages: 648-649

    • NAID

      10021081480

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Highly selective detection of 5-methylcytosine using photochemical ligation2008

    • Author(s)
      Masayuki Ogino, Yuuta Taya, Kenzo Fujimoto
    • Journal Title

      Chemical Communications

      Pages: 5996-5998

    • Related Report
      2009 Final Research Report 2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Ultrafast Reversible Photocrosslinking Reaction: Toward in Situ DNA Manipulation2008

    • Author(s)
      Yoshinaga Yoshimura, Kenzo Fujimoto
    • Journal Title

      Organic Letters

      Pages: 3227-3231

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Toward Reliable Algorithmic Self-Assembly of DNA Tiles : A Fixed-Width Cellular Automaton Pattern2008

    • Author(s)
      K. Fujibayashi, R. Hariadi, S. Park, E. Winfree, S. Murata
    • Journal Title

      NanoLetters 8-7

      Pages: 1791-7

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] T-motif : A Novel Non-crossover Motif for DNA Nanostructures2008

    • Author(s)
      S. Hamada, S. Murata
    • Journal Title

      Proc. Foundation of NanoScience (FNANO 2008)

      Pages: 163-163

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Polymerase chain reaction-based molecular logic gate coupled with cell-free transcription-translation as a reporter2008

    • Author(s)
      Takahiko Nojima^*, Takatoki Yamamoto, Hiroshi Kimura, Teruo Fujii
    • Journal Title

      Chemical Communications

      Pages: 3771-3773

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Cell-free protein synthesis conducted by template DNA with repetitive sequence2008

    • Author(s)
      Takahiko Nojima^*, Hiroshi Kimura, Teruo Fujii
    • Journal Title

      Chemistry Letters

      Pages: 648-649

    • NAID

      10021081480

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Ultrafast Reversible Photocrosslinking Reaction : Toward in Situ DNA Manipulation2008

    • Author(s)
      Yoshinaga Yoshimura, Kenzo Fujimoto
    • Journal Title

      Organic Letters

      Pages: 3227-3231

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Stepwise Assembly of DNA Tile on Surfaces2008

    • Author(s)
      Kotaro Somei, Shohei Kaneda, Teruo Fujii and Satoshi Murata
    • Journal Title

      Lecture Notes on Computer Science LNCS4848

      Pages: 182-190

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] On-chip capillary electrophoresis fractionation of DNA construct for cell-free protein expression2007

    • Author(s)
      Takahiko Nojima, Shohei Kaneda, Teruo Fujii
    • Journal Title

      Chemistry Letters 13455

      Pages: 1346-1347

    • NAID

      10019792299

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] DNAタイルのプログラム自己集積2007

    • Author(s)
      村田智
    • Journal Title

      日本結晶成長学会誌 12451

      Pages: 51-55

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Application of on-chip capillary electrophoresis to cell-free preparation of recombinant DNA2007

    • Author(s)
      Takahiko Nojima, Shohei Kaneda, Teruo Fujii
    • Journal Title

      Nucleic Acids Chemistry Symposium Series 51

      Pages: 87-88

    • Related Report
      2009 Final Research Report
  • [Journal Article] Takehiro Ami and Kenzo Fujimoto Parallel Processable Light-driven DNA Logic Gate Nucleic Acids Symp2007

    • Author(s)
      Shinzi Ogasawara
    • Journal Title

      Series 51

      Pages: 235-236

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Toward Reliable Algorithmic Self-Assembly of DNA Tiles: A Fixed-Width Cellular Automaton Pattern2007

    • Author(s)
      Kenichi Fujibayashi, Rizal Hariadi, Sung Ha Park, Erik Winfree, Satoshi Murata
    • Journal Title

      NanoLetters ASAP Article

      Pages: 1-6

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] DNAタイルのプログラム自己集積2007

    • Author(s)
      村田 智
    • Journal Title

      日本結晶成長学会誌 34-2

      Pages: 51-55

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] On-chip capillary electrophoresis fractionation of DNA construct for cell-free protein expression2007

    • Author(s)
      Takahiko Nojima, Shohei Kaneda and Teruo Fujii
    • Journal Title

      Chemistry Letters 36-11

      Pages: 1346-1347

    • NAID

      10019792299

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Application of on-chip capillary electrophoresis to cell-free preparation of recombinant DNA2007

    • Author(s)
      Takahiko Nojima, Shohei Kaneda and Teruo Fujii
    • Journal Title

      Nucleic Acids Chemistry Symposium Series 51

      Pages: 87-88

    • Related Report
      2007 Annual Research Report
  • [Journal Article] Parallel Processable Light-driven DNA Logic Gate2007

    • Author(s)
      Shinzi Ogasawara, Takehiro Ami and Kenzo Fujimoto
    • Journal Title

      Nucleic Acids Symp. Series 51

      Pages: 235-236

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Presentation] DNAマイクロカプセルの開発2010

    • Author(s)
      堀内浩太, 瀧ノ上正浩, 竹内昌治, 村田智
    • Organizer
      第22回自律分散システムシンポジウム
    • Place of Presentation
      名古屋大学
    • Year and Date
      2010-01-30
    • Related Report
      2009 Annual Research Report 2009 Final Research Report
  • [Presentation] DNAマイクロカプセルの開発2009

    • Author(s)
      堀内浩太, 瀧ノ上正浩, 竹内昌治, 村田智
    • Organizer
      計測自動制御学会システム・情報部門学術講演会SSI2009
    • Place of Presentation
      東京工業大学
    • Year and Date
      2009-11-26
    • Related Report
      2009 Final Research Report
  • [Presentation] dnaナノ構造の基板上成長2009

    • Author(s)
      西本智史, 村田智
    • Organizer
      計測自動制御学会システム・情報部門学術講演会(SSI2009)
    • Place of Presentation
      東京工業大学
    • Year and Date
      2009-11-26
    • Related Report
      2009 Final Research Report
  • [Presentation] DNAを用いたフォトニック結晶の階層的結晶成長制御2009

    • Author(s)
      木村良範, 金田祥平, 藤井輝夫, 村田智
    • Organizer
      計測自動制御学会システム・情報部門学術講演会(SSI2009)
    • Place of Presentation
      東京工業大学
    • Year and Date
      2009-11-26
    • Related Report
      2009 Annual Research Report 2009 Final Research Report
  • [Presentation] バイオナノエンジニアリングへの招待2009

    • Author(s)
      村田智
    • Organizer
      計測自動制御学会システム・情報部門学術講演会(SSI2009)
    • Place of Presentation
      東京工業大学
    • Year and Date
      2009-11-26
    • Related Report
      2009 Annual Research Report 2009 Final Research Report
  • [Presentation] 自己集合モチーフによるdnaナノ構造の作製技術~DNAタイルとその周辺~2009

    • Author(s)
      浜田省吾, 村田智
    • Organizer
      計測自動制御学会システム・情報部門学術講演会(SSI2009)
    • Place of Presentation
      東京工業大学
    • Year and Date
      2009-11-26
    • Related Report
      2009 Final Research Report
  • [Presentation] DNAマイクロカプセルの開発2009

    • Author(s)
      堀内浩太、瀧ノ上正浩、竹内昌治、村田智
    • Organizer
      計測自動制御学会システム・情報部門学術講演会(SSI2009)
    • Place of Presentation
      東京工業大学
    • Year and Date
      2009-11-26
    • Related Report
      2009 Annual Research Report
  • [Presentation] DNAナノ構造の基板上成長2009

    • Author(s)
      西本智史、村田智
    • Organizer
      計測自動制御学会システム・情報部門学術講演会(SSI2009)
    • Place of Presentation
      東京工業大学
    • Year and Date
      2009-11-26
    • Related Report
      2009 Annual Research Report
  • [Presentation] 自己集合モチーフによるDNAナノ構造の作製技術~DNAタイルとその周辺~2009

    • Author(s)
      浜田省吾、村田智
    • Organizer
      計測自動制御学会システム・情報部門学術講演会(SSI2009)
    • Place of Presentation
      東京工業大学
    • Year and Date
      2009-11-26
    • Related Report
      2009 Annual Research Report
  • [Presentation] dnaナノ平面構造の任意位置への成長2009

    • Author(s)
      西本智史, 村田智
    • Organizer
      結晶成長学会
    • Place of Presentation
      名古屋大学
    • Year and Date
      2009-11-12
    • Related Report
      2009 Final Research Report
  • [Presentation] DNAナノ平面構造の任意位置への成長2009

    • Author(s)
      西本智史、村田智
    • Organizer
      結晶成長学会
    • Place of Presentation
      名古屋大学
    • Year and Date
      2009-11-12
    • Related Report
      2009 Annual Research Report
  • [Presentation] アルギン酸ゲルビーズを用いたDNAマイクロカプセルの構築2009

    • Author(s)
      堀内浩太, 瀧ノ上正浩, 竹内昌治, 村田智
    • Organizer
      細胞を創る研究会
    • Place of Presentation
      東京大学
    • Year and Date
      2009-10-02
    • Related Report
      2009 Annual Research Report 2009 Final Research Report
  • [Presentation] Fujimoto Development of a rapid and reversible photocrosslinking of RNA2009

    • Author(s)
      Y. Yoshimura, T. Ohtake, H. Okada, K.
    • Organizer
      The Sixth International Syposium on Nucleic Acids Chemistry
    • Place of Presentation
      TakayamaPuclic Cultural Hall
    • Year and Date
      2009-09-28
    • Related Report
      2009 Final Research Report
  • [Presentation] Developmemt of a rapid and reversible photocrosslinking of RNA2009

    • Author(s)
      Y.Yoshimura, T.Ohtake, H.Okada, K.Fujimoto
    • Organizer
      The Sixth International Syposium on Nucleic Acids Chemistry
    • Place of Presentation
      Takayama Puclic Cultural Hall
    • Year and Date
      2009-09-28
    • Related Report
      2009 Annual Research Report
  • [Presentation] 光応答能を有する核酸誘導体によるプログラマブルなナノシステムの創製2009

    • Author(s)
      藤本健造, 岡田孟, 大竹智子, 竹村有美子, 小笠原慎治
    • Organizer
      高分子討論会2009
    • Place of Presentation
      熊本大学
    • Year and Date
      2009-09-17
    • Related Report
      2009 Final Research Report
  • [Presentation] 光応答能を有する核酸誘導体によるプログラマブルなナノシステムの創製(招待講演)2009

    • Author(s)
      藤本健造、岡田孟、大竹智子、竹村有美子、小笠原慎治
    • Organizer
      高分子討論会2009
    • Place of Presentation
      熊本大学
    • Year and Date
      2009-09-17
    • Related Report
      2009 Annual Research Report
  • [Presentation] New Motifs for DNA Nanostructures2009

    • Author(s)
      S. Murata, S. Nishimoto, S. Hamada
    • Organizer
      International Conference on Materaials for Advanced Technoligies 2009 (ICMAT2009) Symposium M: DNA Nanoscience and Biophyisics
    • Place of Presentation
      Suntec Singapore Int'l Convention and Exhibition Centre
    • Year and Date
      2009-06-29
    • Related Report
      2009 Final Research Report
  • [Presentation] New Motifs for DNA Nanostructures (Invited talk)2009

    • Author(s)
      S.Murata, S.Nishimoto, S.Hamada
    • Organizer
      International Conference on Materaials for Advanced Technoligies 2009 (ICMAT2009) Symposium M : DNA Nanoscience and Biophyisics
    • Place of Presentation
      Suntec Singapore Int'l Convention and Exhibition Centre
    • Year and Date
      2009-06-29
    • Related Report
      2009 Annual Research Report
  • [Presentation] 光を用いたDNA. RNA操作法の開発と応用2009

    • Author(s)
      藤本健造
    • Organizer
      第2回ナノバイオ若手ネットワーキングシンポジウム
    • Place of Presentation
      関西セミナーハウス
    • Year and Date
      2009-06-23
    • Related Report
      2009 Final Research Report
  • [Presentation] 光を用いたDNA.RNA操作法の開発と応用(招待講演)2009

    • Author(s)
      藤本健造
    • Organizer
      第2回ナノバイオ若手ネットワーキングシンポジウム
    • Place of Presentation
      関西セミナーハウス
    • Year and Date
      2009-06-23
    • Related Report
      2009 Annual Research Report
  • [Presentation] Photochemical ligation of DNA probe prepared in click chemistry2009

    • Author(s)
      T. Ami, Y. Yoshimura, T. Matsuzaki, K. Fujimoto
    • Organizer
      The 26th International Conference of Photopolymer Science and Technology
    • Place of Presentation
      Chiba Univ.
    • Year and Date
      2009-06-01
    • Related Report
      2009 Final Research Report
  • [Presentation] Photochemical ligation of DNA probe prepared in click chemistry2009

    • Author(s)
      T.Ami, Y.Yoshimura, T.Matsuzaki, K.Fujimoto
    • Organizer
      The 26^<th> International Conference of Photopolymer Sicence and Thechnology
    • Place of Presentation
      Chiba Univ.
    • Year and Date
      2009-06-01
    • Related Report
      2009 Annual Research Report
  • [Presentation] 分子ロボティクスのためのDNA膜システムの構築2009

    • Author(s)
      堀内浩太, 村田智
    • Organizer
      第19回化学とマイクロ・ナノシステム研究会
    • Place of Presentation
      広島大学
    • Year and Date
      2009-05-28
    • Related Report
      2009 Final Research Report
  • [Presentation] 分子ロボティクスのためのDNA膜システムの構築2009

    • Author(s)
      堀内浩太、村田智
    • Organizer
      第19回化学とスイクロナノシステム研究会
    • Place of Presentation
      広島大学
    • Year and Date
      2009-05-28
    • Related Report
      2009 Annual Research Report
  • [Presentation] 基板成長に適したDNA平面構造の設計2009

    • Author(s)
      林中輝雄, 浜田省吾, 村田智
    • Organizer
      第21回自律分散システムシンポジウム
    • Place of Presentation
      とりぎん文化会館(鳥取)
    • Year and Date
      2009-01-22
    • Related Report
      2009 Final Research Report 2008 Annual Research Report
  • [Presentation] DNA分子のプログラマブルな結晶化2008

    • Author(s)
      村田智
    • Organizer
      学習院大学計算機センター特別プロジェクト「結晶成長の数理」第3回研究会
    • Place of Presentation
      学習院大学
    • Year and Date
      2008-12-26
    • Related Report
      2009 Final Research Report
  • [Presentation] DNA分子のプログラマブルな結晶化(招待講演)2008

    • Author(s)
      村田 智
    • Organizer
      学習院大学計算機センター特別プロジェクト「結晶成長の数理」第3回研究会
    • Place of Presentation
      学習院大学
    • Year and Date
      2008-12-26
    • Related Report
      2008 Annual Research Report
  • [Presentation] DNAナノ構造のアルゴリズミック結晶成長2008

    • Author(s)
      村田智
    • Organizer
      結晶成長国内会議NCCG-38
    • Place of Presentation
      仙台戦災復興記念館
    • Year and Date
      2008-11-04
    • Related Report
      2009 Final Research Report
  • [Presentation] DNAナノ構造のアルゴリズミック結晶成長(招待講演)2008

    • Author(s)
      村田 智
    • Organizer
      結晶成長国内会議NCCG-38
    • Place of Presentation
      仙台戦災復興記念館
    • Year and Date
      2008-11-04
    • Related Report
      2008 Annual Research Report
  • [Presentation] Self-Assembly of DNA Nanostructures2008

    • Author(s)
      S. Murata
    • Organizer
      SAINT Seminar
    • Place of Presentation
      SKKU(ソウル)
    • Year and Date
      2008-10-09
    • Related Report
      2009 Final Research Report
  • [Presentation] Self-Assembly of DNA Nanostructures (招待講演)2008

    • Author(s)
      S. Murata
    • Organizer
      SAINT Seminar
    • Place of Presentation
      SKKU (ソウル)
    • Year and Date
      2008-10-09
    • Related Report
      2008 Annual Research Report
  • [Presentation] Computing with DNA tiling2008

    • Author(s)
      S. Murata
    • Organizer
      International Workshop on Natural Computing (IWNC 2008)
    • Place of Presentation
      横浜国立大学
    • Year and Date
      2008-09-23
    • Related Report
      2009 Final Research Report
  • [Presentation] Computing with DNA tiling (プレナリートーク)2008

    • Author(s)
      S. Murata
    • Organizer
      International Workshop on Natural Computing (IWNC 2008)
    • Place of Presentation
      横浜国立大学
    • Year and Date
      2008-09-23
    • Related Report
      2008 Annual Research Report
  • [Presentation] DNAタイルとその周辺2008

    • Author(s)
      村田智
    • Organizer
      第3回バイオ関連化学合同シンポジウム生体機能関連シンポジウム若手フォーラム
    • Place of Presentation
      東工大すずかけ台
    • Year and Date
      2008-09-17
    • Related Report
      2009 Final Research Report
  • [Presentation] DNAタイルとその周辺(招待講演)2008

    • Author(s)
      村田 智
    • Organizer
      第3回バイオ関連化学合同シンポジウム生体機能関連シンポジウム 若手フォーラム
    • Place of Presentation
      東工大すずかけ台
    • Year and Date
      2008-09-17
    • Related Report
      2008 Annual Research Report
  • [Presentation] DNAタイルの自己組織化2008

    • Author(s)
      村田智
    • Organizer
      日本結晶生長学会, 第33回結晶成長討論会
    • Place of Presentation
      秋保温泉(仙台)
    • Year and Date
      2008-09-11
    • Related Report
      2009 Final Research Report
  • [Presentation] DNAタイルの自己組織化(招待講演)2008

    • Author(s)
      村田智
    • Organizer
      日本結晶生長学会, 第33回結晶成長討論会
    • Place of Presentation
      秋保温泉(仙台)
    • Year and Date
      2008-09-11
    • Related Report
      2008 Annual Research Report
  • [Presentation] Development of template-directed reversible DNA photocrosslinking2008

    • Author(s)
      Yoshinaga Yoshimura, Genki Ozaki, Kenzo Fujimoto
    • Organizer
      Joint Symposium of 18th International Roundtable on Nucleosides, Nucleotides, and Nucleic Acids and 35th International Symposium on Nucleic Acid Chemistry
    • Place of Presentation
      Kyoto University
    • Year and Date
      2008-09-10
    • Related Report
      2009 Final Research Report 2008 Annual Research Report
  • [Presentation] Self-Assembly of DNA tiles-Measurement, Simulation and Error Suppression2008

    • Author(s)
      S. Murata
    • Organizer
      Bionano Symposium
    • Place of Presentation
      工大すずかけ台
    • Year and Date
      2008-05-07
    • Related Report
      2009 Final Research Report
  • [Presentation] Self-Assembly of DNA tiles -Measurement, Simulation and Error Suppression (招待講演)2008

    • Author(s)
      S. Murata
    • Organizer
      Bionano Symposium
    • Place of Presentation
      東工大すずかけ台
    • Year and Date
      2008-05-07
    • Related Report
      2008 Annual Research Report
  • [Presentation] Fluorescent green logic2008

    • Author(s)
      野島高彦, 山本貴富喜, 木村啓志, 藤井輝夫
    • Organizer
      第11回生命化学研究会
    • Place of Presentation
      水上館(群馬県みなかみ町)
    • Related Report
      2009 Final Research Report 2008 Annual Research Report
  • [Presentation] 核酸を用いた新規構造体モチーフの設計2008

    • Author(s)
      浜田省吾, 村田智
    • Organizer
      第20回自律分散システムシンポジウム
    • Place of Presentation
      長野, 上諏訪温泉
    • Related Report
      2009 Final Research Report
  • [Presentation] オンデマンド型微量液滴ハンドリングデバイスによるPNAプローブ法を用いたDNA一塩基置換検出の高速化2008

    • Author(s)
      金田祥平, 野島高彦, 山本貴富喜, 藤井輝夫
    • Organizer
      第25回「センサ・マイクロマシンと応用システム」シンポジウム
    • Place of Presentation
      沖縄県宜野湾市沖縄コンベンションセンター(沖縄県野湾市)
    • Related Report
      2009 Final Research Report
  • [Presentation] Teruo Fujii A droplet on demand microfluidic device for detecting DNA single base substitution using PNA probe2008

    • Author(s)
      Shohei Kaneda, Takahiko Nojima, Takatoki Yakamoto
    • Organizer
      The 12th International Conference on Miniaturized Systems for Chemistry and Life Sciences (microTAS2008)
    • Place of Presentation
      San diego, California, USA
    • Related Report
      2009 Final Research Report
  • [Presentation] PCRに基づく生化学ロジックゲート2008

    • Author(s)
      野島高彦, 山本貴富喜, 木村啓志, 藤井輝夫
    • Organizer
      第3回バイオ関連化学合同シンポジウム
    • Place of Presentation
      東京工業大学すずかけ台キャンパス(神奈川県横浜市)
    • Related Report
      2009 Final Research Report 2008 Annual Research Report
  • [Presentation] DNA増幅と遺伝子発現にもとづくロジックゲート構築のこころみ2008

    • Author(s)
      金田祥平, 野島高彦, 山本貴富喜, 藤井輝夫
    • Organizer
      第17回化学とマイクロ・ナノシステム研究会(17th CHEMINAS)
    • Place of Presentation
      九州大学馬出キャンパス(福岡県福岡市)
    • Related Report
      2009 Final Research Report
  • [Presentation] A droplet on demand microfluidic device for detecting UNA single base substitution using PNA probe2008

    • Author(s)
      Shohei Kaneda, Takahiko Nojima, Takatoki Yakamoto, Teruo Fujii
    • Organizer
      The 12th International Conference on Miniaturized Systems for Chemistry and Life Sciences (microTAS2008)
    • Place of Presentation
      San diego, California, USA
    • Related Report
      2008 Annual Research Report
  • [Presentation] オンデマンド型微量液滴ハンドリングデバイスによるPNAプローブ法を用いたDNA一塩基置換検出の高速化2008

    • Author(s)
      金田祥平, 野島高彦, 山本貴富喜, 藤井輝夫
    • Organizer
      第25回「センサ・マイクロマシンと応用システム」シンポジウ
    • Place of Presentation
      沖縄県宜野湾市沖縄コンベンションセンター(沖縄県野湾市)
    • Related Report
      2008 Annual Research Report
  • [Presentation] DNA増幅と遺伝子発現にもとづくロジックゲート構築のこころみ2008

    • Author(s)
      金田祥平, 野島高彦, 山本貴富喜, 藤井輝夫
    • Organizer
      第17回化学とマイクロ ・ナノシステム研究会(17th CHEMINAS)
    • Place of Presentation
      九州大学馬出キャンパス(福岡県福岡市)
    • Related Report
      2008 Annual Research Report
  • [Presentation] 核酸を用いた新規構造体モチーフの設計2008

    • Author(s)
      浜田省吾, 村田智
    • Organizer
      第20回自律分散システムシンポジウム
    • Place of Presentation
      長野,上諏訪温泉
    • Related Report
      2007 Annual Research Report
  • [Presentation] 光クロスリンク反応による高感度遺伝子多型解析2007

    • Author(s)
      網健裕, 吉村嘉永, 荻野雅之, 藤本健造
    • Organizer
      第30回日本分子生物学会年会・第80回日本生化学会大会合同大会
    • Place of Presentation
      パシフィコ横浜
    • Year and Date
      2007-12-11
    • Related Report
      2009 Final Research Report 2007 Annual Research Report
  • [Presentation] 核酸を用いた新規構造体モチーフ2007

    • Author(s)
      浜田省吾, 村田智
    • Organizer
      「細胞を創る」研究会
    • Place of Presentation
      日本科学未来館
    • Year and Date
      2007-11-26
    • Related Report
      2009 Final Research Report
  • [Presentation] 核酸を用いた新規構造体モチーフ2007

    • Author(s)
      浜田省吾, 村田智
    • Organizer
      「細胞を創る」研究会0.0
    • Place of Presentation
      日本科学未来館
    • Year and Date
      2007-11-26
    • Related Report
      2007 Annual Research Report
  • [Presentation] オンチップ・キャピラリー電気泳動を用いて行う無細胞遺伝子工学実験2007

    • Author(s)
      野島高彦, 金田祥平, 藤井輝夫
    • Organizer
      第5回国際核酸化学シンポジウム(第34回核酸化学シンポジウム)
    • Place of Presentation
      東京大学, 安田講堂(東京都文京区)
    • Related Report
      2009 Final Research Report
  • [Presentation] DNA分離回収用オンチップ・キャピラリー電気泳動を用いる無細胞遺伝子工学実験2007

    • Author(s)
      野島高彦, 金田祥平, 藤井輝夫
    • Organizer
      日本分析化学会第56年会
    • Place of Presentation
      徳島大学工学部(徳島県徳島市)
    • Related Report
      2009 Final Research Report
  • [Presentation] Thermodynamic simulations of DNA tile self-assembly2007

    • Author(s)
      Kenichi Fujibayashi, Satoshi Murata
    • Organizer
      2nd Intl. Conf. on Nano-Networks
    • Place of Presentation
      Catania, Italy
    • Related Report
      2009 Final Research Report 2007 Annual Research Report
  • [Presentation] A New Motif for DNA-based Nanostructures2007

    • Author(s)
      Shogo Hamada, Satoshi Murata
    • Organizer
      Caltech Self-Replicating Chemical Systems Workshop
    • Place of Presentation
      Pasadena, USA
    • Related Report
      2009 Final Research Report 2007 Annual Research Report
  • [Presentation] DNA分離マイクロ流体デバイスを用いて達成する無細胞遺伝子操作2007

    • Author(s)
      野島高彦, 金田祥平, 藤井輝夫
    • Organizer
      第15回化学とマイクロ・ナノシステム研究会(15th CHEMINAS)
    • Place of Presentation
      東北大学青葉山キャンパス(宮城県仙台市)
    • Related Report
      2009 Final Research Report 2007 Annual Research Report
  • [Presentation] DNA分離回収用オンチップ・キャピラリー電気泳動を用いる無細胞遺伝子工学実験2007

    • Author(s)
      野島 高彦, 金田 祥平, 藤井 輝夫
    • Organizer
      本分析化学会第56年会
    • Place of Presentation
      徳島大学工学部(徳島県徳島市)
    • Related Report
      2007 Annual Research Report
  • [Presentation] オンチップ・キャピラリー電気泳動を用いて行う無細胞遺伝子工学実験2007

    • Author(s)
      野島 高彦, 金田 祥平, 藤井 輝夫
    • Organizer
      第5回国際核酸化学シンポジウム(第34回核酸化学シンポジウム)
    • Place of Presentation
      東京大学安田講堂(東京都文京区)
    • Related Report
      2007 Annual Research Report
  • [Book] DNAフラクタル構造体の創製, トポロジーデザイニング-新しい幾何学からはじめる物質・材料設計-2009

    • Author(s)
      村田 智
    • Total Pages
      433
    • Publisher
      エヌティーエス
    • Related Report
      2008 Annual Research Report
  • [Book] DNAタイルのセルフアセンブリ2008

    • Author(s)
      村田智
    • Publisher
      シーエムシー出版
    • Related Report
      2009 Final Research Report
  • [Book] NAタイル・DNAオリガミ,自己組織化ハンドブック2008

    • Author(s)
      村田智
    • Publisher
      エヌティーエス
    • Related Report
      2009 Final Research Report
  • [Book] DNAタイルのセルフアセンブリ, 山下一郎, 芝清隆監修, バイオナノプロセス-溶液中でナノ構造を作るウェット・ナノテクノロジーの薦め2008

    • Author(s)
      村田 智
    • Publisher
      シーエムシー出版
    • Related Report
      2008 Annual Research Report
  • [Book] DNAタイル・DNAオリガミ, 自己組織化ハンドブック2008

    • Author(s)
      村田 智
    • Publisher
      エヌティーエス
    • Related Report
      2008 Annual Research Report
  • [Book] DNAフラクタル構造体の創製,トポロジーデザイニング-新しい幾何学からはじめる物質・材料設計-

    • Author(s)
      村田智
    • Publisher
      エヌティーエス(印刷中)
    • Related Report
      2009 Final Research Report
  • [Remarks] ホームページ

    • URL

      http://www.mrt.dis.titech.ac.jp/

    • Related Report
      2009 Final Research Report
  • [Remarks] 研究室のHPにおける研究紹介

    • URL

      http://www.mrt.dis.titech.ac.jp/research/#ribbon

    • Related Report
      2007 Annual Research Report
  • [Remarks] 東工大HPにおける紹介(最新の研究成果)

    • URL

      http://www.titech.ac.jp/tokyo-tech-in-the-news/j/archives/2008/03/1204588800.html

    • Related Report
      2007 Annual Research Report
  • [Patent(Industrial Property Rights)] 核酸構造体及びその核酸構造体を用いた核酸構造物,並びにその核酸構造物の製造方法2009

    • Inventor(s)
      浜田省吾, 村田智, 林中輝雄
    • Industrial Property Rights Holder
      国立大学法人東京工業大学
    • Filing Date
      2009-01-20
    • Related Report
      2009 Final Research Report
  • [Patent(Industrial Property Rights)] 核酸構造体及びその核酸構造体を用いた核酸構造物, 並びにその核酸構造物の製造方法2009

    • Inventor(s)
      浜田省吾, 村田 智, 林中輝雄
    • Industrial Property Rights Holder
      国立大学法人東京工業大学
    • Filing Date
      2009-01-20
    • Related Report
      2008 Annual Research Report
    • Overseas
  • [Patent(Industrial Property Rights)] 核酸構造体及びその核酸構造体を用いた拡散構造物2008

    • Inventor(s)
      浜田省吾, 村田智
    • Industrial Property Rights Holder
      国立大学法人東京工業大学
    • Industrial Property Number
      2008-012050
    • Filing Date
      2008-01-22
    • Related Report
      2007 Annual Research Report
  • [Patent(Industrial Property Rights)] 核酸構造体及びその核酸構造体を用いた核酸構造物

    • Inventor(s)
      浜田省吾, 村田智
    • Industrial Property Rights Holder
      国立大学法人東京工業大学
    • Industrial Property Number
      2008-012050
    • Related Report
      2009 Final Research Report

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Published: 2007-04-01   Modified: 2016-04-21  

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