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Development and Evaluation of Integron Gene Cassette Metagenome Analysis

Research Project

Project/Area Number 19201041
Research Category

Grant-in-Aid for Scientific Research (A)

Allocation TypeSingle-year Grants
Section一般
Research Field Applied genomics
Research InstitutionNational Institute of Advanced Industrial Science and Technology

Principal Investigator

MARUYAMA Akihiko  National Institute of Advanced Industrial Science and Technology, 生物プロセス研究部門, 研究グループ付 (30202336)

Co-Investigator(Kenkyū-buntansha) YASURO Kurusu  茨城大学, 農学部, 教授 (60272118)
HIDEYOSHI Yoshioka  独立行政法人産業技術総合研究所, 地圏資源環境研究部門, 研究員 (30415765)
HIROYUKI Fuse (YASUO Mitani / SATOSHI Suyama)  独立行政法人産業技術総合研究所, 生物機能工学研究部門, 主任研究員 (10358103)
布施 博之  独立行政法人産業技術総合研究所, 生物機能工学研究部門, 主任研究員 (30357925)
陶山 哲志  独立行政法人産業技術総合研究所, 生物機能工学研究部門, 研究員 (10357311)
Research Collaborator ELSAIED Hosam  独立行政法人産業技術総合研究所, 生物プロセス研究部門・1号契約, 職員
STOKES Halord  シドニー工科大学, 教授
Project Period (FY) 2007 – 2010
Project Status Completed (Fiscal Year 2010)
Budget Amount *help
¥47,060,000 (Direct Cost: ¥36,200,000、Indirect Cost: ¥10,860,000)
Fiscal Year 2010: ¥11,180,000 (Direct Cost: ¥8,600,000、Indirect Cost: ¥2,580,000)
Fiscal Year 2009: ¥11,700,000 (Direct Cost: ¥9,000,000、Indirect Cost: ¥2,700,000)
Fiscal Year 2008: ¥11,960,000 (Direct Cost: ¥9,200,000、Indirect Cost: ¥2,760,000)
Fiscal Year 2007: ¥12,220,000 (Direct Cost: ¥9,400,000、Indirect Cost: ¥2,820,000)
Keywords微生物 / 遺伝子 / メタゲノム / インテグロン / 環境適応 / 極限環境 / IODP / 海洋 / 機能 / 特殊環境 / 汚染環境 / メタンハイドレート
Research Abstract

This project aimed to study the mobile DNA element, integrons, and associated gene cassettes, for the first time, in extreme marine environments. Novel and diverse integron structures and environment- adaptive gene cassettes have been recovered. This project had three main achievements. First, it introduced new methodology for recovery of integrons from environmental metagenomes. Second, it extended our understanding to the contribution of integrons in the adaptation of bacteria to extreme marine conditions. Third, it provided us with several novel adaptive and metabolic genes that have several biotechnological applications.

Report

(6 results)
  • 2010 Annual Research Report   Final Research Report ( PDF )
  • 2009 Annual Research Report   Self-evaluation Report ( PDF )
  • 2008 Annual Research Report
  • 2007 Annual Research Report
  • Research Products

    (50 results)

All 2011 2010 2009 2008 2007 Other

All Journal Article (10 results) (of which Peer Reviewed: 10 results) Presentation (33 results) Book (4 results) Patent(Industrial Property Rights) (3 results)

  • [Journal Article] Marine integrons containing novel integrase genes, attachment sites, attI, and associated gene cassettes in polluted sediments from Suez and Tokyo Bays.2011

    • Author(s)
      Hosam Easa Elsaied, Hatch W Stokes, Keiko Kitamura, Yasuro Kurusu, Youichi Kamagata, Akihiko Maruyama.
    • Journal Title

      THE ISME Journal (Nature Publication Group) in press

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Marine integrons containing novel integrase genes, attachment sites, attI, and associated gene cassettes in polluted sediments from Suez and Tokyo Bays.2011

    • Author(s)
      Hosam Easa Elsaied, Hatch W stokes, Keiko Kitamura, Yasuro Kurusu, Youichi Kamagata, Akihiko Maruyama.
    • Journal Title

      THE ISIS JOURNAL (NATURE PUBLICATION GROUP)

      Volume: In press

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] First Investigation of the Microbiology of the Deepest Layer of Ocean Crust.2010

    • Author(s)
      Olivia U.Mason, Tatsuo Nakagawa, Martin Rosner, Joy D.Van Nostrand, Jizhong Zhou, Akihiko Maruyama, Martin R.Fisk, Stephen J.Giovannoni.
    • Journal Title

      PLOS ONE. 5

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Activities and distribution of methanogenic and methane-oxidizing microbes in marine sediments from the Cascadia Margin.2010

    • Author(s)
      Hideyoshi Yoshioka, Akihiko Maruyama, Takamichi Nakamura, Yowske Higashi, Hiroyuki Fuse, Akira Sakata, Douglas H. Bartlett.
    • Journal Title

      Geobiology. 8

      Pages: 169-243

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] First Investigation of the Microbiology of the Deepest Layer of Ocean Crust2010

    • Author(s)
      Olivia U.Mason, Tatsuo Nakagawa, Martin Rosner, Joy D.Van Nostrand, Jizhong Zhou, Akihiko Maruyama, Martin R.Fisk, Stephen J.Giovannoni
    • Journal Title

      PLOS ONE

      Volume: 5

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Activities and distribution of methanogenic and methane-oxidizing microbes in marine sediments from the Cascadia Margin2010

    • Author(s)
      Hideyoshi Yoshioka, Akihiko Maruyama, Takamichi Nakamura, Yowske Higashi, Hiroyuki Fuse, Akira Sakata, Douglas H.Bartlett
    • Journal Title

      Geobiology (In press)

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Novel and diverse integron integrase genes and integron-like gene cassettes are prevalent in deep-sea hydrothermal vents.2007

    • Author(s)
      Hosam Elsaied, H.W.Stokes, Takamichi Nakamura, Keiko Kitamura, Hiroyuki Fuse, Akihiko Maruyama.
    • Journal Title

      Environmental Microbiology. 9

      Pages: 2298-2312

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Novel and diverse integron integrase genes and integron-like gene cassettes are prevalent in deep-sea hydrothermal vents2007

    • Author(s)
      Hosam Elsaied, H. W. Stokes, Takamichi Nakamura, Keiko Kitamura, Hiroyuki Fuse, Akihiko Maruyama
    • Journal Title

      Environmental Microbiology 9

      Pages: 2298-2312

    • Related Report
      2009 Self-evaluation Report
    • Peer Reviewed
  • [Journal Article] Novel and diverse integron integrase genes and integron-like genecassettes are prevalent in deep-sea hydrothermal vents2007

    • Author(s)
      Hosam Elsaied, H.W.Stokes, Takamichi Nakamura, KeikoKitamura, Hiroyuki Fuse and Akihiko Maruyama
    • Journal Title

      Environmental Microbiology 9

      Pages: 2298-2312

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Activities and distribution of methanogenic and methane-oxidizing microbes in marine sediments from the Cascadia Margin

    • Author(s)
      Hideyoshi Yoshioka, Akihiko Maruyama, Takamichi Nakamura, Yowske Higashi, Hiroyuki Fuse, Akira Sakata, Douglas H. Bartlett
    • Journal Title

      Geobiology

    • Related Report
      2009 Self-evaluation Report
    • Peer Reviewed
  • [Presentation] 自然環境中の新規機能遺伝子探索に有効なIGCメタゲノム解析手法2011

    • Author(s)
      Elsaied Easa Hosaml、北村恵子、丸山明彦
    • Organizer
      LS-BT合同研究発表会
    • Place of Presentation
      産業技術総合研究所(つくば市)
    • Year and Date
      2011-02-01
    • Related Report
      2010 Annual Research Report
  • [Presentation] Diversity and role of Integron/gene cassetto metagenome in extreme marine einvironments2010

    • Author(s)
      Elsaied Easa Hosam、秋庭綾、北村恵子、丸山明彦
    • Organizer
      第26回日本微生物生態学会大会
    • Place of Presentation
      筑波大学(つくば市)
    • Year and Date
      2010-11-24
    • Related Report
      2010 Annual Research Report
  • [Presentation] Potential of subsurface microbes to produce natural gas2010

    • Author(s)
      坂田将、吉岡秀佳、持丸華子、眞弓大介、大庭雅寛、前田治男、丸山明彦、鎌形洋一
    • Organizer
      第26回日本微生物生態学会大会
    • Place of Presentation
      筑波大学(つくば市)
    • Year and Date
      2010-11-24
    • Related Report
      2010 Annual Research Report
  • [Presentation] BACTERIAL INTEGRON METAGENOME IN MICROBIAL COMMUNITIES INHABIT A DEEP GAS HYDRATE CORE-ANCIENT2010

    • Author(s)
      Hosam Easa Elsaied, Yosuke Higashi, Hideyoshi Yoshioka, Keiko Kitamura, Akihiko Maruyama
    • Organizer
      The 13th International Symposium on Microbial Ecology
    • Place of Presentation
      ワールドコンベンションセンター(米国シアトル市)
    • Year and Date
      2010-08-23
    • Related Report
      2010 Annual Research Report
  • [Presentation] 深海における細菌由来異常塩基の生成と抑制に関する研究2010

    • Author(s)
      林宏恵, 久留主泰朗
    • Organizer
      Blue Earth 2010
    • Place of Presentation
      東京
    • Year and Date
      2010-03-01
    • Related Report
      2009 Self-evaluation Report
  • [Presentation] Diversity and role of Integron/gene cassette metagenome in extreme marine einvironments.2010

    • Author(s)
      Elsaied Easa Hosam、秋庭綾、北村恵子、丸山明彦
    • Organizer
      第26回日本微生物生態学会大会
    • Place of Presentation
      つくば市
    • Related Report
      2010 Final Research Report
  • [Presentation] Bacterial Integron Metagenome in Microbial Communities Inhabit a Deep Gas Hydrate Core-Ancient.2010

    • Author(s)
      Hosam Easa Elsaied, Yosuke Higashi, Hideyoshi Yoshioka, Keiko Kitamura, Akihiko Maruyama
    • Organizer
      The 13th International Symposium on Microbial Ecology
    • Place of Presentation
      米国シアトル市
    • Related Report
      2010 Final Research Report
  • [Presentation] 深海における細菌由来異常塩基の生成と抑制に関する研究2010

    • Author(s)
      林宏恵、久留主泰朗
    • Organizer
      Blue Earth 2010
    • Place of Presentation
      東京海洋大学、東京都
    • Related Report
      2009 Annual Research Report
  • [Presentation] カスカディア縁辺域におけるガスハイドレートの分布と地下微生物活動の関係2009

    • Author(s)
      吉岡秀佳、中村孝道、東陽介、丸山明彦、坂田将
    • Organizer
      日本地球化学会大会
    • Place of Presentation
      広島大学、広島県
    • Year and Date
      2009-09-15
    • Related Report
      2009 Annual Research Report
  • [Presentation] インテグロン・ジーンカセットシステムに着目した海洋環境微生物ゲノム解析2009

    • Author(s)
      Hosam Elsaied, Keiko Kitamura, Akihiko Maruyama
    • Organizer
      マリンバイオテクノロジー学会大会
    • Place of Presentation
      早稲田大学
    • Year and Date
      2009-05-31
    • Related Report
      2009 Annual Research Report
  • [Presentation] Potential methane production in sediments from the Cascadia Margin, IODP Expedition 3112009

    • Author(s)
      Hideyoshi Yoshioka, Yowske Higashi, Takamichi Nakamura, Akihiko Maruyama, Shou Sakata
    • Organizer
      GSJ Symposium
    • Place of Presentation
      Tokyo
    • Year and Date
      2009-02-26
    • Related Report
      2008 Annual Research Report
  • [Presentation] Sphingomonas属細菌群を宿主とする高発現ベクターの構築2009

    • Author(s)
      福田敦史、林宏恵、久留主泰朗
    • Organizer
      第32回日本分子生物学会
    • Place of Presentation
      神奈川
    • Related Report
      2010 Final Research Report
  • [Presentation] Composition of bacterial integron metagenome in marine sediment contaminated with industrial wastes.2009

    • Author(s)
      Hosam Elsaied, 北村恵子, 丸山明彦
    • Organizer
      Composition of bacterial integron metagenome in marine sediment contaminated with industrial wastes.
    • Place of Presentation
      Hiroshima.
    • Related Report
      2010 Final Research Report
  • [Presentation] インテグロン・ジーンカセットシステムに着目した海洋環境微生物ゲノム解析2009

    • Author(s)
      丸山明彦、ホサム・エルセイド
    • Organizer
      マリンバイオテクノロジー学会
    • Place of Presentation
      東京
    • Related Report
      2010 Final Research Report 2009 Self-evaluation Report
  • [Presentation] Composition of bacterial integron metagenome in marine sediment contaminated with industrial wastes2009

    • Author(s)
      Hosam Elsaied, Keiko Kitamura, Akihiko Maruyama
    • Organizer
      Japanese Society of Microbial Ecology
    • Place of Presentation
      Hiroshima
    • Related Report
      2009 Self-evaluation Report
  • [Presentation] Characterization of Novel Plasmids from Sphingomonad2009

    • Author(s)
      Kurusu Y, Ochou M, Saito M.
    • Organizer
      ASM General 109^<th> Meeting
    • Place of Presentation
      Philadelphia, USA.
    • Related Report
      2009 Self-evaluation Report
  • [Presentation] Sphingomonas 属細菌群を宿主とする高発現ベクターの構築2009

    • Author(s)
      福田敦史, 林宏恵, 久留主泰朗
    • Organizer
      第32回日本分子生物学会
    • Place of Presentation
      神奈川
    • Related Report
      2009 Self-evaluation Report
  • [Presentation] Composition of bacterial integron metagenome in marine sediment contaminated with industrial wastes.2009

    • Author(s)
      Hosam Elsaied, Keiko Kitamura, Akihiko Maruyama
    • Organizer
      Japanese Society of Microbial Ecology
    • Place of Presentation
      Hiroshima University
    • Related Report
      2009 Annual Research Report
  • [Presentation] Characterization of Novel Plasmids from Sphingomonad2009

    • Author(s)
      Kurusu Y, Ochou M, Saito M
    • Organizer
      ASM General 109^<th> Meeting
    • Place of Presentation
      Philadelphia, USA
    • Related Report
      2009 Annual Research Report
  • [Presentation] Sphingomonas属細菌群を宿主とする高発現ベクターの構築2009

    • Author(s)
      福田敦史、林宏恵、久留主泰朗
    • Organizer
      第32回日本分子生物学会
    • Place of Presentation
      パシフィコ横浜、神奈川県
    • Related Report
      2009 Annual Research Report
  • [Presentation] Sphingomonas属細菌由来プラスミドの宿主内分配機構の解析2009

    • Author(s)
      大森孟道、雄長誠、林宏恵、久留主泰朗
    • Organizer
      第32回日本分子生物学会
    • Place of Presentation
      パシフィコ横浜、神奈川県
    • Related Report
      2009 Annual Research Report
  • [Presentation] Integron mobile metagenome in bacterial communities from aquatic oil polluted environment : A source to uncover new functional genes of important scientific and commercial value2008

    • Author(s)
      Hosam Elsaied, Keiko Kitamura, Akihiko Maruyama
    • Organizer
      Marine Biotechnology Symposium
    • Place of Presentation
      Kyoto
    • Year and Date
      2008-05-25
    • Related Report
      2008 Annual Research Report
  • [Presentation] Integron metagenome comparison between petroleum oil contaminated and oil-free marine sediments : New study and methodology to expand knowledge about integron diversity in marine environment.2008

    • Author(s)
      Hosam Elsaied, Keiko Kitamura, Akihiko Maruyama
    • Organizer
      International Symposium on Microbial Ecology.
    • Place of Presentation
      Cains, Australia.
    • Related Report
      2010 Final Research Report
  • [Presentation] Integron mobile metagenome in bacterial communities from aquatic oil polluted environment : A source to uncover new functional genes of important scientific and commercial value.2008

    • Author(s)
      Hosam Elsaied, Keiko Kitamura, Akihiko Maruyama
    • Organizer
      Marine Biotechnology Symposium.
    • Place of Presentation
      京都
    • Related Report
      2010 Final Research Report
  • [Presentation] Integron metagenome comparison between petroleum oil contaminated and oil-free marine sediments : New study and methodology to expand knowledge about integron diversity in marine environment2008

    • Author(s)
      Hosam Elsaied, Keiko Kitamura, Akihiko Maruyama
    • Organizer
      International Symposium on Microbial Ecology
    • Place of Presentation
      Cains, Australia
    • Related Report
      2009 Self-evaluation Report 2008 Annual Research Report
  • [Presentation] 海底熱水系試料での微生物機能遺伝子探索2007

    • Author(s)
      丸山 明彦、Elsaied Easa Hosam
    • Organizer
      東京大学海洋研究所共同利用シンポジウム「海底拡大系の総合研究」
    • Place of Presentation
      東京都
    • Year and Date
      2007-10-30
    • Related Report
      2007 Annual Research Report
  • [Presentation] 海底熱水系試料での微生物機能遺伝子探索2007

    • Author(s)
      丸山明彦, ホサム・イーサ・エルセイド
    • Organizer
      東京大学海洋研究所共同利用シンポジウム「海底拡大系の総合研究」
    • Place of Presentation
      東京
    • Year and Date
      2007-10-01
    • Related Report
      2009 Self-evaluation Report
  • [Presentation] 海洋環境微生物からの効率的な機能遺伝子の採取2007

    • Author(s)
      Elsaied Easa Hosam、中村 孝道、北村 恵子、布施 博之、丸山 明彦
    • Organizer
      マリンバイオテクノロジー学会
    • Place of Presentation
      山形市
    • Year and Date
      2007-05-27
    • Related Report
      2007 Annual Research Report
  • [Presentation] カスカディア縁辺域における微生物・遺伝子の特徴とメタン生成について2007

    • Author(s)
      吉岡 秀佳、東 陽介、中村 孝道、丸山 明彦
    • Organizer
      第3回IODP成果報告会
    • Place of Presentation
      東京都
    • Year and Date
      2007-05-25
    • Related Report
      2007 Annual Research Report
  • [Presentation] Cascadiaメタンハイドレート海域試料の微生物・遺伝子解析(IODP#311)2007

    • Author(s)
      中村 孝道、東 陽介、吉岡 秀佳、布施 博之、帆秋 利洋、Elsaied Easa Hosam、丸山 明彦
    • Organizer
      日本地球惑星科学連合学会
    • Place of Presentation
      千葉県幕張市
    • Year and Date
      2007-05-24
    • Related Report
      2007 Annual Research Report
  • [Presentation] 海底熱水系試料での微生物機能遺伝子探索。東京大学海洋研究所共同利用シンポジウム2007

    • Author(s)
      丸山明彦、ホサム・イーサ・エルセイド
    • Organizer
      海底拡大系の総合研究
    • Place of Presentation
      東京
    • Related Report
      2010 Final Research Report
  • [Presentation] カスカディア縁辺域における微生物・遺伝子の特徴とメタン生成について2007

    • Author(s)
      吉岡秀佳、東陽介、中村孝道、丸山明彦
    • Organizer
      第3回IODP成果報告会
    • Place of Presentation
      東京
    • Related Report
      2010 Final Research Report 2009 Self-evaluation Report
  • [Presentation] 海洋環境微生物からの効率的な機能遺伝子の採取2007

    • Author(s)
      Elsaied Easa Hosam、中村孝道、北村恵子、布施博之、丸山明彦
    • Organizer
      マリンバイオテクノロジー学会
    • Place of Presentation
      山形
    • Related Report
      2010 Final Research Report
  • [Book] Diversity and role of bacterial integron/gene cassette metagenome in extreme marine environments.In : Handbook of Molecular Microbial Ecology II : Metagenomics in Different Habitats2011

    • Author(s)
      Hosam Elsaied, Akihiko Maruyama
    • Publisher
      John Wiley & Sons, Inc.(In press)
    • Related Report
      2010 Annual Research Report
  • [Book] Diversity and role of bacterial integron/gene cassette metagenome in extreme marine environments. In : Handbook of Molecular Microbial Ecology II : Metagenomics in Different Habitats2010

    • Author(s)
      Hosam Elsaied, Akihiko Maruyama
    • Publisher
      John Wiley & Sons, Inc.(Inpress)
    • Related Report
      2009 Annual Research Report
  • [Book] Diversity and role of bacterial integron/gene cassette metagenome in extreme marine environments.(In : Handbook of Molecular Microbial Ecology II : Metagenomics in Different Habitats.)

    • Author(s)
      Hosam Elsaied, Akihiko Maruyama
    • Publisher
      John Wiley & Sons, Inc. (in press)
    • Related Report
      2010 Final Research Report
  • [Book] Diversity and role of bacterial integron/gene cassette metagenome in extreme marine environments. Handbook of Molecular Microbial Ecology II : Metagenomics in Different Habitats

    • Author(s)
      Hosam Elsaied, Akihiko Maruyama
    • Publisher
      John Wiley & Sons, Inc.
    • Related Report
      2009 Self-evaluation Report
  • [Patent(Industrial Property Rights)] 機能遺伝子探索用PCRプライマー2007

    • Inventor(s)
      丸山明彦、ホサム・エルセイド
    • Industrial Property Rights Holder
      独立行政法人産業技術総合研究所理事長
    • Industrial Property Number
      2007-120210
    • Filing Date
      2007-04-27
    • Related Report
      2010 Final Research Report
  • [Patent(Industrial Property Rights)] 機能遺伝子探索用PCRプライマー2007

    • Inventor(s)
      丸山明彦, ホサム・エルセイド
    • Industrial Property Rights Holder
      独立行政法人産業技術総合研究所理事長
    • Filing Date
      2007-04-27
    • Related Report
      2009 Self-evaluation Report
  • [Patent(Industrial Property Rights)] 機能遺伝子探索用PCRプライマー2007

    • Inventor(s)
      丸山 明彦, ら
    • Industrial Property Rights Holder
      産業技術総合研究所理事長
    • Industrial Property Number
      2007-120210
    • Filing Date
      2007-04-27
    • Related Report
      2007 Annual Research Report

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Published: 2007-04-01   Modified: 2016-04-21  

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