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Evolution of fish diversity : An approach from comprehensive and large-scale molecular phylogenetic analysis

Research Project

Project/Area Number 19207007
Research Category

Grant-in-Aid for Scientific Research (A)

Allocation TypeSingle-year Grants
Section一般
Research Field Biodiversity/Systematics
Research InstitutionThe University of Tokyo

Principal Investigator

NISHIDA Mutsumi  The University of Tokyo, 大気海洋研究所, 教授 (90136896)

Co-Investigator(Kenkyū-buntansha) MABUCHI Kohji  東京大学, 大気海洋研究所, 助教 (50401295)
MIYA Masaki  千葉県立中央博物館, 動物研究科, 上席研究員 (30250137)
Project Period (FY) 2007 – 2010
Project Status Completed (Fiscal Year 2010)
Budget Amount *help
¥50,310,000 (Direct Cost: ¥38,700,000、Indirect Cost: ¥11,610,000)
Fiscal Year 2010: ¥5,200,000 (Direct Cost: ¥4,000,000、Indirect Cost: ¥1,200,000)
Fiscal Year 2009: ¥13,390,000 (Direct Cost: ¥10,300,000、Indirect Cost: ¥3,090,000)
Fiscal Year 2008: ¥14,950,000 (Direct Cost: ¥11,500,000、Indirect Cost: ¥3,450,000)
Fiscal Year 2007: ¥16,770,000 (Direct Cost: ¥12,900,000、Indirect Cost: ¥3,870,000)
Keywords進化 / 魚類 / ミトコンドリアDNA / 多様性 / 分子系統 / ウナギ / メダカ / トゲウオ / ミトコンドリア / 骨鰾類 / 分岐年代 / 遺伝子配置変動 / シクリッド / アンコウ / ニシン
Research Abstract

To illuminate the pattern of diversification of fishes, the biggest group in the vertebrate with nearly 27,000 species, whole mitochondrial genomes of various fishes have been sequenced. Extensive and intensive molecular phylogenetic analyses of the sequence data obtained provided a number of findings affording various insights into process of diversification of fishes on the earth.

Report

(6 results)
  • 2010 Annual Research Report   Final Research Report ( PDF )
  • 2009 Annual Research Report   Self-evaluation Report ( PDF )
  • 2008 Annual Research Report
  • 2007 Annual Research Report
  • Research Products

    (241 results)

All 2011 2010 2009 2008 2007 Other

All Journal Article (119 results) (of which Peer Reviewed: 116 results) Presentation (113 results) Book (7 results) Remarks (2 results)

  • [Journal Article] Multiple invasions into freshwater by pufferfishes (Teleostei : Tetraodontidae) : a mitogenomic perspective2011

    • Author(s)
      Yamanoue Y., 他
    • Journal Title

      PLoS ONE 6

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Remarkable morphological stasis in an extant vertebrate despite tens of millions of years of divergence2011

    • Author(s)
      Lavou S., 他
    • Journal Title

      Proc.Roy.Soc.B 278

      Pages: 1003-1008

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Cryptic species of the gobioid paedomorphic genus Schindleria from Palau, western Pacific Ocean.2011

    • Author(s)
      Kon, T., T.Yoshino, M.Nishida.
    • Journal Title

      Ichthyological Research

      Volume: 58 Pages: 62-66

    • NAID

      10028174054

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Remarkable morphological stasis in an extant vertebrate despite tens of millions of years of divergence.2011

    • Author(s)
      Lavoue, S., M.Miya, M.E.Arnegard, P.B.McIntyre, V.Mamonekene, M.Nishida.
    • Journal Title

      Proceedings of the Royal Society B : Biological Sciences

      Volume: 278 Pages: 1003-1008

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Evidence from mitochondrial genomics supports the lower Mesozoic of South Asia as the time and place of basal divergence of cyprini form fishes(Actinopterygii : Ostariophysi).2011

    • Author(s)
      Saitoh, K., T.Sado, M.H.Doosey, H.L.Bart, .Jr., J.G.Inoue, M.Nishida, R.L.Mayden, M.Miya.
    • Journal Title

      Zoological Journal of the Linnean Society

      Volume: 161 Pages: 633-662

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Multiple invasions into freshwater by pufferfishes(Teleostei : Tetraodontidae) : a mitogenomic perspective.2011

    • Author(s)
      Yamanoue, Y., M.Miya, H.Doi, K.Mabuchi, H.Sakai, M.Nishida.
    • Journal Title

      PLoS ONE

      Volume: 6

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Transfer RNA gene arrangement and codon usage in vertebrate mitochondrial genomes : a new insight into gene order conservation2010

    • Author(s)
      Satoh T.P., 他
    • Journal Title

      BMC Genomics 11

      Pages: 479-479

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Deep-ocean origin of the freshwater eels2010

    • Author(s)
      Inoue J.G., 他
    • Journal Title

      Biol.Lett. 6

      Pages: 363-366

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Mitochondrial phylogenomics of anchovies (family Engraulidae) and recurrent origins of pronounced miniaturization in the order Clupeiformes2010

    • Author(s)
      Lavoue S., M.Miya, M.Nishida
    • Journal Title

      Mol.Phylogen. Evol. 56

      Pages: 480-486

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Evolutionary history of anglerfishes (Teleostei : Lophiiformes) : a mitogenomic perspective2010

    • Author(s)
      Miya M., 他
    • Journal Title

      BMC Evol.Biol. 10

      Pages: 58-58

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Biogeography and evolution of the Carassius auratus-complex in East Asia.2010

    • Author(s)
      Takada, M., K.Tachihara, T.Kon, G.Yamamoto, K.Iguchi, M.Miya, M.Nishida.
    • Journal Title

      BMC Evolutionary Biology

      Volume: 10 Pages: 7-7

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Cryptic diversification of the swamp eel Monopterus albus in East and Southeast Asia, with special reference to the Ryukyuan populations.2010

    • Author(s)
      Matsumoto, S., T.Kon, M.Yamaguchi, H.Takeshima, Y.Yamazaki, T.Mukai, K.Kuriiwa, M.Kohda, M.Nishida.
    • Journal Title

      Ichthyological Research

      Volume: 57 Pages: 71-77

    • NAID

      10027373874

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Evolutionary history of anglerfishes(Teleostei : Lophiiformes) : amitogenomic perspective.2010

    • Author(s)
      Miya, M., T.W.Pietsch, James W.Orr, R.J.Arnold, T.P.Satoh, A.M.Shedlock, H.-C.Ho, M.Shimazaki, M.Yabe, M.Nishida.
    • Journal Title

      BMC Evolutionary Biology

      Volume: 10 Pages: 58-58

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Intraspecific variation in the mitochondrial genome among local populations of Medaka Oryzias latipes.2010

    • Author(s)
      Hirayama, M., T.Mukai, M.Miya, Y.Murata, Y.Sekiya, T.Yamashita, M.Nishida, S.Watabe, S.Oda, H.Mitani.
    • Journal Title

      Gene

      Volume: 457 Pages: 13-24

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Distribution of native Japanese mtDNA haplotypes of the common carp(Cyprinus carpio) in Lake Biwa.(in Japanese with English abstract)2010

    • Author(s)
      Mabuchi, K., H.Senou, H.Takeshima, K.Nakai, M.Nishida.
    • Journal Title

      Japanese Journal of Ichthyology

      Volume: 57 Pages: 1-12

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Multiplex PCR-based genotyping of mitochondrial DNA from two species of ocean sunfish from the genus Mola(Tetraodontiformes : Molidae)found inJapanese waters.(in Japanese with English abstract)2010

    • Author(s)
      Yamanoue, Y., IC Mabuchi, E.Sawai, Y.Sakai, H.Hashimoto, M.Nishida.
    • Journal Title

      Japanese Journal of Ichthyology

      Volume: 57 Pages: 27-34

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Mitochondrial phylogenomics of anchovies(family Engraulidae)and recurrent origins of pronounced miniaturization in the order Clupeiformes.2010

    • Author(s)
      Lavoue, S., M.Miya, M.Nishida.
    • Journal Title

      Molecular Phylogenetics and Evolution

      Volume: 56 Pages: 480-486

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Stable isotope and molecular analyses indicate that hybridization with non-native domesticated common carp influence habitat use of native carp.2010

    • Author(s)
      Matsuzaki, S.S., K.Mabuchi, N.Takamura, B.J.Hicks, M.Nishida, I.Washitani.
    • Journal Title

      Oikos

      Volume: 119 Pages: 964-971

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Teleost fish with specific genome duplication as unique models of vertebrate evolution.2010

    • Author(s)
      Sato, Y., M.Nishida.
    • Journal Title

      Environmental Biology of Fishes

      Volume: 88 Pages: 169-188

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Simple and easy method using multiplex PCR for distinguishing Ryukyuan domestic and introduced C auratus.(in Japanese with English abstract)2010

    • Author(s)
      Takada, M., K.Tachihara, M.Nishida.
    • Journal Title

      Fish Genetics and Breeding Science

      Volume: 39 Pages: 109-114

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Deep-ocean origin of the freshwater eels.2010

    • Author(s)
      Inoue, J.G., M.Miya, M.J.Miller, T.Sado, R.Hanel, K.Hatooka, J.Aoyama, Y.Minegishi, M.Nishida, K.Tsukamoto.
    • Journal Title

      Biology Letters

      Volume: 6 Pages: 363-366

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Genetic constitution and phylogenetic relationships among Japanese cruciancarps(Carassius).2010

    • Author(s)
      Yamamoto, G., M.Takada, K.Iguchi, M.Nishida.
    • Journal Title

      Ichthyological Research

      Volume: 57 Pages: 215-222

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Intron-loss evolution of hatching enzyme genes in Teleostei.2010

    • Author(s)
      Kawaguchi, M., J.Hiroi, M.Miya, M.Nishida, I.Iuchi, S.Yasumasu.
    • Journal Title

      BMC Evolutionary Biology

      Volume: 10 Pages: 260-260

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Transfer RNA gene arrangement and codon usage in vertebrate mitochondrial genomes : a new insight into gene order conservation.2010

    • Author(s)
      Satoh, T.P., Y.Sato, N.Masuyama, M.Miya, M.Nishida.
    • Journal Title

      BMC Genomics

      Volume: 11 Pages: 479-479

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Distribution and habitats of Carassius auratus in the Ryukyu Archipelago : comparison between indigenous and introduced populations.(in Japanese with English abstract)2010

    • Author(s)
      Takada, M., K.Tachihara, M.Nishida.
    • Journal Title

      Japanese Journal of Ichthyology

      Volume: 57 Pages: 113-123

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Conservation of the egg envelope digestion mechanism of hatching enzymein euteleostean fishes.2010

    • Author(s)
      Kawaguchi, M., S.Yasumasu, A.Shimizu, K.Sano, I.luchi, M.Nishida.
    • Journal Title

      FEBS Journal

      Volume: 277 Pages: 4973-4987

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Higher and lower-level relationships of the deep-sea fish order Alepocephaliformes (Teleostei : Otocephala) inferred from whole mitogenome sequences2009

    • Author(s)
      Poulsen J.Y., 他
    • Journal Title

      Biol.J.Linn.Soc. 98

      Pages: 923-936

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Divergence time of the two regional medaka populations in Japan as a new time scale for comparative genomics of vertebrates2009

    • Author(s)
      Setiamarga D.H.E., 他
    • Journal Title

      Biol.Lett. 5

      Pages: 812-816

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] The historical biogeography of the freshwater knifefishes using mitogenomic approaches : A Mesozoic origin of the Asian notopterids (Actinopterygii : Osteoglossomorpha)2009

    • Author(s)
      Inoue J.G., Y.Kumazawa, M.Miya, M.Nishida
    • Journal Title

      Mol.Phylogen.Evol. 51

      Pages: 486-499

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Reconstructing the phylogenetic relationships of the earth's most diverse clade of freshwater fishes-Order Cypriniformes (Actinopterygii : Ostariophysi) : A case ctudy using multiple nuclear loci and the mitochondrial genome2009

    • Author(s)
      Mayden R.L., 他
    • Journal Title

      Mol.Phylogen.Evol. 51

      Pages: 500-514

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Explosive speciation of Takifugu : another use of fugu as a model system for evolutionary biology2009

    • Author(s)
      Yamanoue Y., 他
    • Journal Title

      Mol.Biol.Evol. 26

      Pages: 623-629

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Unique patterns of pelvic fin evolution : a case study of balistoid fishes (Pisces : Tetraodontiformes) based on whole mitochondrial genome sequences2009

    • Author(s)
      Yamanoue Y., 他
    • Journal Title

      Mol.Phylogen.Evol. 50

      Pages: 179-189

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Stickleback phylogenies resolved : Evidence from mitochondrial genomes and 11 nuclear genes2009

    • Author(s)
      Kawahara R., 他
    • Journal Title

      Mol.Phylogen.Evol. 50

      Pages: 401-404

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Deep-sea mystery solved : astonishing larval transformations and extreme sexual dimorphism unite three fish families2009

    • Author(s)
      Johnson G.D., 他
    • Journal Title

      Biol.Lett. 5

      Pages: 235-239

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] The historical biogeography of the freshwater knifefishes using mitogenomic approaches : A Mesozoic origin of the Asian notopterids (Actinopterygii : Osteoglossomorpha)2009

    • Author(s)
      Inoue, Jun G., Yoshinori Kumazawa, Masaki Miya, Mutsumi Nishida
    • Journal Title

      Molecular Phylogenetics and Evolution 51

      Pages: 486-499

    • Related Report
      2009 Self-evaluation Report
    • Peer Reviewed
  • [Journal Article] Screening the V2R-type putative odorant receptor gene repertoire in bitterling Tanakia lanceolata.2009

    • Author(s)
      Hashiguchi, Yasuyuki, Mutsumi Nishida.
    • Journal Title

      Gene

      Volume: 441 Pages: 74-79

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Population structure of two closely related pelagic cichlids in Lake Victoria, Haplochromis pyrrhocephalus and H.laparogramma.2009

    • Author(s)
      Maeda, K., M.Takeda, K.Kamiya, M.Aibara, S.I.Mzighani, M.Nishida, S.Mizoiri, T.Sato, Y.Terai, N.Okada, H.Tachida.
    • Journal Title

      Gene

      Volume: 441 Pages: 67-73

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Electric charge divergence in proteins : insights into the evolution of their three-dimensional properties.2009

    • Author(s)
      Sato, Y., M.Nishida.
    • Journal Title

      Gene

      Volume: 441 Pages: 3-11

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Reconstructing the phylogenetic relationships of the earth's most diverse clade of freshwater fishes-Order Cypriniformes (Actinopterygii : Ostariophysi) : A case ctudy using multiple nuclear loci and the mitochondrial genome.2009

    • Author(s)
      Mayden, R.L., W.J.Chen, H.L.Bart, M.H.Doosey, A.M.Simons, K.L.Tang, R.M.Wood, M.K.Agnew, L.Yang, M.Vincent Hirt, M.D.Clements, K.Saitoh, T.Sado, M.Miya, M.Nishida.
    • Journal Title

      Molecular Phylogenetics and Evolution

      Volume: 51 Pages: 500-514

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The historical biogeography of the freshwater knifefishes using mitogenomic approaches : A Mesozoic origin of the Asian notopterids (Actinopterygii : Osteoglossomorpha).2009

    • Author(s)
      Inoue, J.G., Y.Kumazawa, M.Miya, M.Nishida.
    • Journal Title

      Molecular Phylogenetics and Evolution

      Volume: 51 Pages: 486-499

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Molecular approaches to the study of biological invasions : applicability to ecosystem management.2009

    • Author(s)
      Nisikawa, U., R.Yonekura, K.Iwasaki, M.Nishida, K.Kawamura, H.Kawai.
    • Journal Title

      Japanese Journal of Ecology

      Volume: 59 Pages: 161-166

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Genetic population structure of a reef goby, Bathygobius cocosensis, in the northwestern Pacific.2009

    • Author(s)
      Mukai, T., S.Nakamura, M.Nishida.
    • Journal Title

      Ichthyological Research

      Volume: 56 Pages: 380-387

    • NAID

      10025862409

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Isolation and characterization of 13 microsatellite loci in the nine-spined stickleback (Pungitius pungitius) and cross-species amplification in 5 stickleback species (family Gasterosteidae).2009

    • Author(s)
      Meguro, Y., H.Takahashi, H.Takeshima, M.Nishida, A.Goto.
    • Journal Title

      Conservation Genetics Resources

      Volume: 1 Pages: 31-34

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Temporal pattern of loss/persistence of duplicate genes involved in signal transduction and metabolic pathways after teleost-specific genome duplication.2009

    • Author(s)
      Sato, Y., Y.Hashiguchi, M.Nishida.
    • Journal Title

      BMC Evolutionary Biology

      Volume: 9 Pages: 127-127

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Isolation and characterization of 12 microsatellite loci for cross-species amplification in the cyprinid gudgeons Squalidus chankaensis and S.japonicus.2009

    • Author(s)
      Kakioka, R., K.Watanabe, H.Takeshima, M.Nishida.
    • Journal Title

      Molecular Ecology Resources

      Volume: 9 Pages: 1141-1144

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Mitogenomic evaluation of the unique facial nerve pattern as a phylogenetic marker within the percifom fishes (Teleostei : Percomorpha).2009

    • Author(s)
      Yagishita, N., M.Miya, Y.Yamanoue, S.M.Shirai, K.Nakayama, N.Suzuki, T.P.Satoh, K.Mabuchi, M.Nishida, T.Nakabo.
    • Journal Title

      Molecular Phylogenetics and Evolution

      Volume: 53 Pages: 258-266

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Ayu (Plecoglossus altivelis) at a contact zone between amphidromous and landlocked forms : genetic analyses of populations in the Yodo River system.2009

    • Author(s)
      Takeshima, H., K.Iguchi, M.Nishida.
    • Journal Title

      Zoological Science

      Volume: 26 Pages: 536-542

    • NAID

      40016772428

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Zooplankton diversity analysis through single-gene sequencing of a community sample.2009

    • Author(s)
      Machida, R.J., Y.Hashiguchi, M.Nishida, S.Nishida.
    • Journal Title

      BMC Genomics

      Volume: 10 Pages: 438-438

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Whole genome duplication and the evolution of fishes.(in Japanese with English abstract)2009

    • Author(s)
      Sato, Y., M.Nishida.
    • Journal Title

      Japanese Journal of Ichthyology

      Volume: 56 Pages: 89-109

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Divergence time of the two regional medaka populations in Japan as a new time scale for comparative genomics of vertebrates.2009

    • Author(s)
      Setiamarga, D.H.E., M.Miya, Y.Yamanoue, Y.Azuma, J.G.Inoue, N.B.Ishiguro, K.Mabuchi, M.Nishida.
    • Journal Title

      Biology Letters

      Volume: 5 Pages: 812-816

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Higher and lower-level relationships of the deep-sea fish order Alepocephaliformes (Teleostei : Otocephala) inferred from whole mitogenome sequences.2009

    • Author(s)
      Poulsen, J.Y., P.R.Moller, S.Lavoue, M.Miya, S.W.Knudsen, M.Nishida.
    • Journal Title

      Biological Journal of Linnean Society

      Volume: 98 Pages: 923-936

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Behavioral and morphological differences between feral and domesticated strains of common carp.2009

    • Author(s)
      Matsuzaki, S.S., K.Mabuchi, N.Takamura, M.Nishida, I.Washitani.
    • Journal Title

      Journal of Fish Biology

      Volume: 75 Pages: 1206-1220

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Evolution of multiple phosphodiesterase isoforms in stickleback invoIved in cAMP signal transduction pathway.2009

    • Author(s)
      Sato, Y. , Y. Hashiguchi, and M. Nishida.
    • Journal Title

      BMC Systems Biology 3

      Pages: 23-23

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Different hatching strategisc in embryos of two species, pacific herring Clupea pallasii and Japanese anchovy Engraulis japonicus, that belong tu the same order Clupeiformes, and their environmental adaptation.2009

    • Author(s)
      Kawaguchi, M. , H. Fujita, N. Yoshizaki, J. Hiroi, H. Okouchi, Y. Nagakura, T. Noda, S. Watanabe, S. Katayama, S. Iwamuro, M. Nishida, I. Iuchi, and S. Yasumasu.
    • Journal Title

      Journal of Experimental Zoology, Part B: Molecular and Developmental Evolution 312B

      Pages: 95-107

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Explosive speciation of Takifugu: another use of fugu as a model system for evolutionary biology.2009

    • Author(s)
      Yamanoue, Y. , M. Miya, K. Matsuura, S. Miyazawa, N. Tsukamoto, H. Doi, H. Takahashi, K. Mabuchi, M. Nishida, and H. Sakai.
    • Journal Title

      Molecular Biology and Evolution 26

      Pages: 623-629

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Unique patterns of pelvic fin evolution: a case study of balistoid fishes (Pisces: Tetraodontiformes) based on whole mitochondrial genome sequences.2009

    • Author(s)
      Yamanoue, Y. , M. Miya, K. Matsuura, H. Sakai, M. Katoh, and M. Nishida.
    • Journal Title

      Molecular Phylogenetics and Evolution 50

      Pages: 179-189

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Stickleback phylogenies resoIved: Evidence from mitochondrial genomes and 11 nuclear genes.2009

    • Author(s)
      Kawahara, R. , M. Miya, K. Mabuchi, T. J. Near, and M. Nishida.
    • Journal Title

      Molecular Phylogenetics and Evolution 50

      Pages: 401-404

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Deep-Sea mystery solved: astonishing larval transformations and extreme sexual dimorphism unite three fish families.2009

    • Author(s)
      Jolmson, G. D. , J. R. Paxton, T. T. Sutton, T. P. Satoh, T. Sado, M. Nishida, and M. Miya.
    • Journal Title

      Biology Letters 5

      Pages: 235-239

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Interrelationships of Atherinomorpha (medakas, flyingfishes, killifishes, silversides, and their relatives) : The first evidence based on whole mitogenome sequences2008

    • Author(s)
      Setiamarga D., H.E., 他
    • Journal Title

      Mol.Phylogen.Evol. 49

      Pages: 598-605

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Mitogenomic evaluation of the historical biogeography of cichlids toward reliable dating of teleostean divergences2008

    • Author(s)
      Azuma Y., 他
    • Journal Title

      BMC Evol.Biol. 8

      Pages: 215-215

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] A new perspective on phylogeny and evolution of tetraodontiform fishes (Pisces : Acanthopterygii) based on whole mitochondrial genome sequences : Basal ecological diversification?2008

    • Author(s)
      Yamanoue Y., 他
    • Journal Title

      BMC Evol.Biol. 8

      Pages: 212-212

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Monophyly, phylogenetic position and inter-familial relationships of the Alepocephaliformes (Teleostei) based on whole mitogenome sequences2008

    • Author(s)
      Lavoue S., 他
    • Journal Title

      Mol.Phylogen.Evol. 47

      Pages: 1111-1121

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Interrelationships of the 11 gasterosteiform families (sticklebacks, pipefishes, and their relatives) : a new pespective based on whole mitogenome sequences from 75 higher teleosts2008

    • Author(s)
      Kawahara R., 他
    • Journal Title

      Mol.Phylogen.Evol. 46

      Pages: 224-236

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Interrelationships of Atherinomorpha (medakas, flyingfishes, killifishes, silversides, and their relatives) : The first evidence based on whole mitogenome sequences2008

    • Author(s)
      Setiamarga, Davin, H. E., Masaki Miya, Yusuke Yamanoue, Kohji Mabuchi, Takashi P. Satoh, Jun G Inoue, Mutsumi Nishida
    • Journal Title

      Molecular Phylogenetics and Evolution 49

      Pages: 598-605

    • Related Report
      2009 Self-evaluation Report
    • Peer Reviewed
  • [Journal Article] Mitogenomic evaluation of the historical biogeography of cichlids toward reliable dating of teleostean divergences2008

    • Author(s)
      Azuma, Yoichiro, Yoshinori Kumazawa, Masaki Miya, Kohji Mabuchi, Mutsumi Nishida
    • Journal Title

      BMC Evolutionary Biology 8

      Pages: 215-215

    • Related Report
      2009 Self-evaluation Report
    • Peer Reviewed
  • [Journal Article] Hatching enzyme of the ovoviviparous black rockfish Sebasts shflegelii-enovironmental adaptation of the hatching enzyme and evolutionary aspects of formation of the pseudogene.2008

    • Author(s)
      Kawaguchi, M. , M. Nakagawa, T. Noda, N. Yoshizaki, J. Hiroi, M. Nishida, I. Iuchi, and S. Yasumasu
    • Journal Title

      FEBS Journal 275

      Pages: 2884-2898

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Evolutionary patterns and selective pressures of odorant/pheromone receptor gene families in teleost fishes.2008

    • Author(s)
      Hashiguchi, Yasuyuk, Yoshimi Furuta, and Mutsumi Nishida.
    • Journal Title

      PloS ONE 3

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Interrelationships of Atherinomorpha (medakas, flyingfishes, killifishes, Silversides, and their relatives) : The first evidence based on whole mitogenome sequences.2008

    • Author(s)
      Setiamarga, I)avin, H. E. , Masaki Miya, Yusuke Yamanoue, Kohji Mabuchi, Takashi P. Satoh, Jun G Inoue, Mutsumi Nishida.
    • Journal Title

      Molecular Phylogenetics and Evolution 49

      Pages: 598-605

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Isolation and characterization of 15microsatellite loci for the Japanese gudgeon Sarcocheilichthys variegatus.2008

    • Author(s)
      Fujita, S. , T. Komiya, H. Takeshima, K. Watanabe, and M. Nishida.
    • Journal Title

      Molecular Ecology Resources 8

      Pages: 1335-1337

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Mitogenomic evaluation of the historical biogeography of cichlids toward reliable dating of teleostean divergences.2008

    • Author(s)
      Azuma, Y. , Y. Kumazawa, M. Miya, K. Mabuchi, and M. Nishida.
    • Journal Title

      BMC Evolutionary Biology 8

      Pages: 215-215

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A new perspective on phylogeny and evolution of tetraodontiform fishes (Pisces: Acanthopterygii) based on whole mitochondrial genome sequences: Basal ecological diversification?2008

    • Author(s)
      Yamanoue, Y. , M. Miya, K. Matsuura, M. Katoh, H. Sakai, and M. Nishida.
    • Journal Title

      BMC Evolutionary Biology 8

      Pages: 212-212

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The phylogenetic position of an undescribed paedomorphic clupeiform: Mitogenomic evidence.2008

    • Author(s)
      Lavoue, S. , M. Miya, A. Kawaguchi, T. Yoshino and M. Nishida.
    • Journal Title

      Ichthyolqgical Research 55

      Pages: 328-334

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Heterotypy in N-terminal region of Growth/Differentiation Factor5 (GDF5) mature protein during evolution of teleosts.2008

    • Author(s)
      Fujimura, K. , Y. Terai, N. Ishiguro, M. Miya, M. Nishida, and N. Okada.
    • Journal Title

      Molecular Biology and Evolution 25

      Pages: 797-800

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Monophyly, phylogenetic position and inter-familial relationships of the Alepocephaliformes (Teleostei) based on whole mitogenome sequences.2008

    • Author(s)
      Lavoue, S. , M. Miya, J. Y. Poulsen, P. R. Moller, and M. Nishida.
    • Journal Title

      Molecular Phylogenetics and Evolution 47

      Pages: 1111-1121

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Interrelationships of the 11 gasterosteiform families (sticklebacks, pipefishes, and their relatives) : a new pespective based on whole mitogerlme sequences from 75 higher teleosts.2008

    • Author(s)
      Kawahara, R. , M. Miya, K. Mabuchi, S. Lavoue, J. G. Inoue, T. P. Satoh, A. Kawaguchi, and M. Nishida.
    • Journal Title

      Molecular Phylogenetics and Evolution 46

      Pages: 224-236

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Isolation and characterisation of 39 microsatellite loci in the endangered Japanese loach Leptobotia curta.2008

    • Author(s)
      Watanabe, K. , H. Takeshima, A. Iwata, T. Abe, K. Uehara, R. Kakioka, D. Kihira, and M. Nishida.
    • Journal Title

      Molecular Ecology Notes 8

      Pages: 145-148

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Isolation and characterization of microsatellite loci in the cichlid fish in Lake Victoria, Haplochlomis chilotes.2008

    • Author(s)
      Maeda, K. , H. Takeshima, S. Mizoiri, N. Okada, M. Nishida, and H. Tachida.
    • Journal Title

      Molecular Ecology Notes 8

      Pages: 428-430

    • Related Report
      2008 Annual Research Report
  • [Journal Article] Mitochondrial DNA analysis reveals cryptic large-scale invasion of non-native genotypes of common carp Cyprinus caprio in Japan.2008

    • Author(s)
      Mabuchi, K. , H. Senou, and M. Nishida.
    • Journal Title

      Molecular Ecology 17

      Pages: 796-806

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Mitochondrial DNA analysis reveals cryptic large-scale invasion of non-native genotypes of common carp Cyprinus caprio in Japan2008

    • Author(s)
      Mabuchi, K., H. Senou, M. Nishida
    • Journal Title

      Molecular Ecology 17

      Pages: 796-809

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Isolation and characterization of microsatellite loci in the cichlid fish in Lake Victoria, Haplochlomis chilotes2008

    • Author(s)
      Maeda, K., H. Takeshima, S. Mizoiri, N. Okada, M. Nishida, H. Tachida
    • Journal Title

      Molecular Ecology Notes 8

      Pages: 428-430

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Isolation and characterisation of 39 microsatellite loci in the endangered Japanese loach Leptobotia curta2008

    • Author(s)
      Watanabe, K., H. Takeshima, A. Iwata, T. Abe, K. Uehara, R. Kakioka, D. Kihira, M. Nishida
    • Journal Title

      Molecular Ecology Notes 8

      Pages: 145-148

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Interrelationships of the 11 gasterosteiform families (sticklebacks, pipefishes, and their relatives) : a new pespective based on whole mitogenome sequences from 75 higher teleosts2008

    • Author(s)
      Kawahara, R., M. Miya, K. Mabuchi, S. Lavoue, J. G. Inoue, T. P. Satoh, A. Kawaguchi, M. Nishida
    • Journal Title

      Molecular Phylogenetics and Evolution 46

      Pages: 224-236

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Monophyly, phylogenetic position and inter-familial relationships of the Alepocephaliformes (Teleostei) based on whole mitogenome sequences2008

    • Author(s)
      Lavoue, S., M. Miya, J. Y. Poulsen, P. R. Moller, M. Nishida
    • Journal Title

      Molecular Phylogenetics and Evolution 47

      Pages: 1111-1121

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Heterotypy in N-terminal region of Growth/Differentiation Factor 5 (GDF5) mature protein during evolution of teleosts2008

    • Author(s)
      Fujimura, K., Y. Terai, N. Ishiguro, M. Miya, M. Nishida, N. Okada
    • Journal Title

      Molecular Biology and Evolution 25

      Pages: 797-800

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The phylogenetic position of an undescribed paedomorphic clupeiform : Mitogenomic evidence2008

    • Author(s)
      Lavoue, S., M. Miya, A. Kawaguchi, T. Yoshino, M. Nishida
    • Journal Title

      Ichthyological Research 55

      Pages: 328-334

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A new perspective on phylogeny and evolution of tetraodontiform fishes (Pisces : Acanthopterygii) based on whole mitochondrial genome sequences : Basal ecological diversification?2008

    • Author(s)
      Yamanoue, Y., M. Miya, K. Matsuura M. Katoh, H. Sakai, M. Nishida
    • Journal Title

      BMC Evolutionary Biology 8

      Pages: 212-212

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Mitogenomic evaluation of the historical biogeography of cichlids toward reliable dating of teleostean divergences2008

    • Author(s)
      Azuma, Y., Y. Kumazawa, M. Miya K. Mabuchi, M. Nishida
    • Journal Title

      BMC Evolutionary Biology8

      Pages: 215-215

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Isolation and characterization of 15 microsatellite loci for the Japanese gudgeon Sarcocheilichthys variegatus2008

    • Author(s)
      Fujita, S., T. Komiya, H. Takeshima, K. Watanabe, M. Nishida
    • Journal Title

      Molecular Ecology Resources 8

      Pages: 1335-1337

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Interrelationships of Atherinomorpha (medakas, flyingfishes, killifishes, silversides, and their relatives) : The first evidence based on whole mitogenome sequences2008

    • Author(s)
      Setiamarga, D., H. E., M. Miya, Y. Yamanoue, K. Mabuchi, T. P. Satoh, J. G Inoue, M. Nishida
    • Journal Title

      Molecular Phylogenetics and Evolution 49

      Pages: 598-605

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Evolutionary patterns and selective pressures of odorant/pheromone receptor gene families in teleost fishes2008

    • Author(s)
      Hashiguchi, Y., Y. Furuta, M. Nishida
    • Journal Title

      PLoS ONE 3

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Mitochondrial genome and a nuclear gene indicate a novel phylogenetic position of deep-sea tube-eye fish (Stylephoridae). Ichthyol2007

    • Author(s)
      Miya M., 他
    • Journal Title

      Res. 54

      Pages: 323-332

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Phylogenetic position of tetraodontiform fishes within the higher teleosts : Bayesian inferences based on 44 whole mitochondrial genome sequences2007

    • Author(s)
      Yamanoue Y., 他
    • Journal Title

      Mol.Phylogen.Evol. 45

      Pages: 89-101

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Phylogenetic relationships among anchovies, sardines, herrings and their relatives (Clupeiformes), inferred from whole mitogenome sequences2007

    • Author(s)
      Lavoue S., 他
    • Journal Title

      Mol.Phylogen.Evol. 43

      Pages: 1096-1105

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Independent evolution of the specialized pharyngeal jaw apparatus in cichlid and labrid fishes2007

    • Author(s)
      Mabuchi K., M.Miya, Y.Azuma, M.Nishida
    • Journal Title

      BMC Evol.Biol. 7

      Pages: 10-10

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Phylogenetic position of tetraodontiform fishes within the higher teleosts : Bayesian inferences based on 44 whole mitochondrial genome sequences2007

    • Author(s)
      Yamanoue, Yusuke, Masaki Miya, Keiichi Matsuura, Naoki Yagishita, Kohji Mabuchi, Harumi Sakai, Masaya Katoh, Mutsumi Nishida
    • Journal Title

      Molecular Phylogenetics and Evolution 45

      Pages: 89-101

    • Related Report
      2009 Self-evaluation Report
    • Peer Reviewed
  • [Journal Article] Phylogenetic relationships among anchovies, sardines, herrings and their relatives (Clupeiformes), inferred from whole mitogenome sequences2007

    • Author(s)
      Lavoue, Sebastien, Masaki Miya, Kenji Saitoh, Naoya B. Ishiguro, Mutsumi Nishida
    • Journal Title

      Molecular Phylogenetics and Evolution 43

      Pages: 1096-1105

    • Related Report
      2009 Self-evaluation Report
    • Peer Reviewed
  • [Journal Article] Independent evolution of the specialized pharyngeal jaw apparatus in cichlid and labrid fishes2007

    • Author(s)
      Mabuchi, K., M. Miya, Y. Aazuma, M. Nishida
    • Journal Title

      BMC Evolutionary Biology 7

      Pages: 10-10

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Phylogenetic relationships among anchovies, sardines, herrings and their relatives (Clupeiformes), inferred from whole mitogenome sequences2007

    • Author(s)
      Lavoue, S., M. Miya, K. Saitoh, N. B. Ishiguro, M. Nishida
    • Journal Title

      Molecular Phylogenetics and Evolution 43

      Pages: 1096-1105

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] DNA sequences identify numerous cryptic species of the vertebrate : A lesson from the gobioid fish Schindleria2007

    • Author(s)
      Kon, T., T. Yoshino, T. Mukai, M. Nishida
    • Journal Title

      Molecular Phylogenetics and Evolution 44

      Pages: 53-62

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Post-stocking dynamics of landlocked ayu traced by a mitochondrial SNP marker. (in Japanese with English abstract)2007

    • Author(s)
      Iwata, H., H. Takeshima, Y. Tago, K. Watanabe, K. Iguchi, M. Nishida
    • Journal Title

      Nippon Suisann Gakkaishi 73

      Pages: 278-283

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Comparative phylogeography of bagrid catfishes in Taiwan2007

    • Author(s)
      Watanabe, K., N. Jang-Liaw, C. Zhang, S. Jeon, M. Nishida
    • Journal Title

      Ichthyological Research 254

      Pages: 253-261

    • NAID

      10019513116

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Phylogenetic position of tetraodontiform fishes within the higher teleosts : Bayesian inferences based on 44 whole mitochondrial genome sequences2007

    • Author(s)
      Yamanoue, Y., M, Miya, K. Matsuura, N. Yagishita, K. Mabuchi, H. Sakai, M. Katoh, M. Nishida
    • Journal Title

      Molecular Phylogenetics and Evolution 45

      Pages: 89-101

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Diversification and adaptive evolution of putative sweet taste receptors in threespine stickleback2007

    • Author(s)
      Hashiguchi, Y., Y. Furuta, R. Kawahara, M. Nishida
    • Journal Title

      Gene 396

      Pages: 170-179

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Mitochondrial genome and a nuclear gene indicate a novel phylogenetic position of deep-seatube-eye fish (Stylephoridae)2007

    • Author(s)
      Miya, M., N. I. Holcroft, T. P. Satoh, M. Yamaguchi, M. Nishida, E. O. Wiley
    • Journal Title

      Ichthyological Research 54

      Pages: 323-332

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Phylogenetic relationships and natural hybridization in rabbitfishes (Teleostei : Siganidae) inferred from mitochondrial and nuclear DNA analyses2007

    • Author(s)
      Kuriiwa, K., N. Hanzawa, T. Yoshino, S. Kimura, M. Nishida
    • Journal Title

      Molecular Phylogenetics and Evolution 45

      Pages: 69-80

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Molecular mechanisms of adaptation and evolution of odor perception in fishes with special reference to the evolutionary dynamics of chemosensory receptor gene families. [In Japanese with English Abstract]2007

    • Author(s)
      Hashiguchi, Y. M. Nishida
    • Journal Title

      Japanese Journal of Ichthyology 54

      Pages: 105-120

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Evolution of trace amine-associated receptor (TAAR) gene family in vertebrates : lineage-specific expansions and degradations of a second class of vertebrate chemosensory receptors expressed in the olfactory epithelium2007

    • Author(s)
      Hashiguchi, Y. M. Nishida
    • Journal Title

      Molecular Biology and Evolution 24

      Pages: 2099-2107

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Phylogenetic position of a whale-fall lancelet (Cephalochordata) inferred from whole mitochondrial genome sequences2007

    • Author(s)
      Kon, T., M. Nohara, Y. Yamanoue, Y. Fujiwara, M. Nishida, T. Nishikawa
    • Journal Title

      BMC Evolutionary Biology 7

      Pages: 127-127

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Evolution of feeding specialization in Tanganyikan scale-eating cichlids : a molecular phylogenetic approach2007

    • Author(s)
      Takahashi, R., K. Watanabe, M. Nishida, M. Hori
    • Journal Title

      BMC Evolutionary Biology 7

      Pages: 195-195

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Post-duplication charge evolution of phosphoglucose isomerases in teleost fishes through weak selection on many amino acids2007

    • Author(s)
      Sato, Y. M. Nishida
    • Journal Title

      BMC Evolutionary Biology 7

      Pages: 204-204

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Extensive lineage-specific gene duplication and evolution of the spiggin multi-gene family in stickleback2007

    • Author(s)
      Kawahara, R., M. Nishida
    • Journal Title

      BMC Evolutionary Biology 7

      Pages: 209-209

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Population structure of two closely related pelagic cichlids in Lake Victoria, Haplochromis pyrrhocephalus and H. laparogramma.

    • Author(s)
      Maeda, K. , M. Takeda, K. Kamiya, M. Aibara, S. I. Mzighani, M. Nishida, S. Mizoiri, T. Sato, Y. Terai, N. Okada, and H. Tachida.
    • Journal Title

      Gene (in press)

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Screening the V2R-type putative odorant receptor gene repertoire in Bitterling Tanakia Lanceolata.

    • Author(s)
      Hashiguchi, Y. and M. Nishida.
    • Journal Title

      Gene (in press)

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Electric charge divergence in proteins: insights into the evolution of their three-dimensional properties

    • Author(s)
      Sato, Y. and M. Nishida.
    • Journal Title

      Gene (in press)

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Isolation and characterization of 13 microsatellite loci in the nine-spined stickleback (Pungitius pungitius) and cross-species amplification in 5 stickleback species (family Gasterosteidae).

    • Author(s)
      Meguro, Y. , H. Takahashi, H. Takeshima, M. Nishida, and A. Goto.
    • Journal Title

      Conservation Genetics Resources (in press)

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Genetic population structure of a reef goby, Bathygobius cocosensis, in the northwestern Pacific.

    • Author(s)
      Mukai, T. , S. Nakamura, and M. Nishida.
    • Journal Title

      Ichthyological Research (in press)

    • NAID

      10025862409

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The historical bigeography of the freshwater knifefishes using mitogenomic approaches: A Mesozoic origin of the Asian notopterids (Actinopterygii: Osteoglossomorpha).

    • Author(s)
      Inoue, J. G. , Y. Kumazawa, M. Miya, and M. Nishida.
    • Journal Title

      Molecular Phylogenetics and Evolution (in press)

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Reconstructing thr phylogenetic relationships of the earth's most diverseclade of freshwater fishes-Order Cypriniformes (Actinopterygii: Ostariophysi): A case ctudy using multiple nuclear loci and the mitochondrial genome.

    • Author(s)
      Mayden, R. L. , Wei-Jen Chen, H. L. Bart, M. H. Doosey, A. M. S. , K. L. Tang, R. M. Wood, M. K. Agnew, L. Yang, M. V. Hirt, M. D. Clements, K. Saitoh, T. Sado, M. Miya, and M. Nishida.
    • Journal Title

      Molecular Phylogenetics and Evolution (in press)

    • Related Report
      2008 Annual Research Report
  • [Journal Article] Molecular approaches to the study of biological invasions: applicability to ecosystem management. (In Japanese with English abstract)

    • Author(s)
      Nishikawa, Y. , R. Yonekura, K. Iwasaki, M. Nishida, K. Kawamura, and H. Kawai.
    • Journal Title

      Japanese Journal of Ecology (in press)

    • Related Report
      2008 Annual Research Report
  • [Presentation] フナ地域個体群の種内系統構成:福井県三方湖水系におけるケーススタディー2011

    • Author(s)
      武島弘彦・松崎信一郎・児玉晃治・前田英章・西田睦
    • Organizer
      第58回日本生態学会
    • Place of Presentation
      札幌コンベンションセンター,札幌
    • Year and Date
      2011-03-09
    • Related Report
      2010 Annual Research Report
  • [Presentation] Genetic composition of crucian carp(Carassius auratus)populations in and around Lake Mikata.2011

    • Author(s)
      Takashima, H., M.Nishida
    • Organizer
      The 2nd Joint Symposium between Kyushu University and University of Tokyo "GCOE Asian ConservationEcolog'
    • Place of Presentation
      The Kyushu University 50th Memorial Hall,Hakozaki Campus,Kyushu Univ.,Fukuoka.
    • Year and Date
      2011-02-04
    • Related Report
      2010 Annual Research Report
  • [Presentation] 生物多様性の起源を探る:分子系統学の挑戦2010

    • Author(s)
      西田睦
    • Organizer
      第46回霞が関環境講座自然科学の第一線XXV(地球化学研究協会)
    • Place of Presentation
      霞が関ビル,東京
    • Year and Date
      2010-12-04
    • Related Report
      2010 Annual Research Report
  • [Presentation] Did pufferfishes originate from deep sea? A mitogenomic perspective on phylogeny and evolution of tetraodonti form fishes(puffers and theirallies).2010

    • Author(s)
      Yamanoue, Y., M.Miya, M.Nishida.
    • Organizer
      Trench Connection : International Symposium on the Deegest Environment on Earth
    • Place of Presentation
      Atmosphere and Ocean Research Institute, The University ofTokyo, Kashiwa.
    • Year and Date
      2010-11-10
    • Related Report
      2010 Annual Research Report
  • [Presentation] Deep-ocean origin of the freshwater eels.2010

    • Author(s)
      Inoue, J.G., M.Miya, M.J.Miller, J.Aoyama, M.Nishida, K Tsukamoto.
    • Organizer
      International Symposium on the Deepest Environmenton Earth
    • Place of Presentation
      Atmosphere and Ocean Research Institute,The University of Tokyo,Kashiwa.
    • Year and Date
      2010-11-10
    • Related Report
      2010 Annual Research Report
  • [Presentation] Phylogeny of the Snailfishes(family Liparidae) : a Mitogenomic Perspective.2010

    • Author(s)
      Satoh, T.P., M.Miya, T.Sado, P.R Moller, J.W.Orr, M.Nishida.
    • Organizer
      International Symposium on the Deepest Environmenton Earth
    • Place of Presentation
      Atmosphere and Ocean Research Institute,The University of Tokyo,Kashiwa.
    • Year and Date
      2010-11-10
    • Related Report
      2010 Annual Research Report
  • [Presentation] 魅惑の魚!リュウキュウアユ2010

    • Author(s)
      田睦
    • Organizer
      平成22年度リュウキュウアユを蘇生させる会・9月度仕事人倶楽部勉強会
    • Place of Presentation
      代市ビル,東京
    • Year and Date
      2010-10-05
    • Related Report
      2010 Annual Research Report
  • [Presentation] DNAから探る魚類の多様性と進化2010

    • Author(s)
      西田睦
    • Organizer
      名古屋市立大学自然科学研究科セミナー(第62回)
    • Place of Presentation
      名古屋市立大学山の畑キャンパス,名古屋
    • Year and Date
      2010-10-01
    • Related Report
      2010 Annual Research Report
  • [Presentation] Fundulusとメダカ間の種特異的な卵膜分解からわかった艀化酵素と卵膜の分子共進化2010

    • Author(s)
      川口眞理・安増茂樹・井内一郎・西田睦
    • Organizer
      日本動物学会第81回東京大会
    • Place of Presentation
      東京大学駒場キャンパス,東京
    • Year and Date
      2010-09-25
    • Related Report
      2010 Annual Research Report
  • [Presentation] 南半球に分布するメルルーサ科底魚の地理的に離れた2集団間で見られた小さな遺伝的差異2010

    • Author(s)
      武島弘彦・畑中晃昌・山田彰一・山崎裕治・木村郁夫・西田睦
    • Organizer
      2010年度日本魚類学会年会
    • Place of Presentation
      三重県文化会館,三重
    • Year and Date
      2010-09-24
    • Related Report
      2010 Annual Research Report
  • [Presentation] 奄美リュウキュウアユの遺伝的ステータス2010

    • Author(s)
      井口恵一朗・武島弘彦・西田睦
    • Organizer
      2010年度日本魚類学会年会
    • Place of Presentation
      三重県文化会館,三重
    • Year and Date
      2010-09-24
    • Related Report
      2010 Annual Research Report
  • [Presentation] ミトコンドリアゲノム全長配列に基づくタニノボリ科タニノボリ亜科の分子系統解析2010

    • Author(s)
      佐土哲也・斉藤憲治・西田睦・宮正樹
    • Organizer
      2010年度日本魚類学会年会
    • Place of Presentation
      三重県文化会館,三重
    • Year and Date
      2010-09-24
    • Related Report
      2010 Annual Research Report
  • [Presentation] クサウオ科魚類の系統進化学的研究:ミトコンドリアゲノム全長配列からのアプローチ2010

    • Author(s)
      佐藤崇・宮正樹・佐土哲也・P.R..MOLLER・J.W.ORR・西田睦
    • Organizer
      2010年度日本魚類学会年会
    • Place of Presentation
      三重県文化会館,三重
    • Year and Date
      2010-09-24
    • Related Report
      2010 Annual Research Report
  • [Presentation] テンジクダイ科の分子系統と"テンジクダイ属"の非単系統性2010

    • Author(s)
      馬渕浩司・T.FRASER・東陽一郎・西田睦
    • Organizer
      2010年度日本魚類学会年会
    • Place of Presentation
      三重県文化会館,三重
    • Year and Date
      2010-09-24
    • Related Report
      2010 Annual Research Report
  • [Presentation] シラスウオ属(Schindleria)魚類の卵における付着装置の多様性2010

    • Author(s)
      原政子・昆 健志・仲村茂夫・西田睦
    • Organizer
      2010年度日本魚類学会年会
    • Place of Presentation
      三重県文化会館,三重
    • Year and Date
      2010-09-24
    • Related Report
      2010 Annual Research Report
  • [Presentation] 魚類の進化に関する分子系統学的研究2010

    • Author(s)
      西田睦
    • Organizer
      日本進化学会
    • Place of Presentation
      東京工業大学大岡山キャンパス,東京.(日本進化学会賞受賞講演)
    • Year and Date
      2010-08-04
    • Related Report
      2010 Final Research Report
  • [Presentation] 魚類の進化に関する分子系統学的研究.2010

    • Author(s)
      西田睦
    • Organizer
      日本進化学会
    • Place of Presentation
      東京工業大学大岡山キャンパス,東京
    • Year and Date
      2010-08-04
    • Related Report
      2010 Annual Research Report
  • [Presentation] 艀化酵素と卵膜の分子共進化:盈ηゴαん5とメダカ間における種特異的な卵膜分解.2010

    • Author(s)
      川口眞理・安増茂樹・西田睦
    • Organizer
      日本進化学会第12回大会
    • Place of Presentation
      東京工業大学大岡山キャンパス,東京
    • Year and Date
      2010-08-04
    • Related Report
      2010 Annual Research Report
  • [Presentation] Diversity of the gene arrangements for fish mitochondrial genome.2010

    • Author(s)
      Satoh, T.P., M.Miya, M.Nishida
    • Organizer
      International Symposium on Biodiversity Sciences 2010 'Genome, Evolution and Environment'
    • Place of Presentation
      Hotel Rubura Ohzan,Nagoya
    • Year and Date
      2010-08-01
    • Related Report
      2010 Annual Research Report
  • [Presentation] Genetic differentiation and distribution pathways of the bronze featherback Notopterus notopterus and climbing perch Anabas testudineus in Southeast Asia.2010

    • Author(s)
      Takagi, A.P., S.Ishikawa, M.Nishida, H.Kurokura
    • Organizer
      International Symposium on Biodiversity Sciences 2010 'Genome, Evolution and Environment'
    • Place of Presentation
      Hotel Rubura Ohzan,Nagoya
    • Year and Date
      2010-08-01
    • Related Report
      2010 Annual Research Report
  • [Presentation] Multiple invasions of freshwater by puffers : a mitogenomic perspective on phylogeny of Tetraodontidae(Teleostei : Tetraodontiformes).2010

    • Author(s)
      Yamanoue, Y., M.Miya, K.Mabuchi, H.Doi, H.Sakai, M.Nishida.
    • Organizer
      International Symposium on Biodiversity Sciences2010 'Genome, Evolution, and Environment'
    • Place of Presentation
      Hotel Rubura Ohzan,Nagoya
    • Year and Date
      2010-08-01
    • Related Report
      2010 Annual Research Report
  • [Presentation] Evolutionary history of anglerfishes(Teleostei : Lophiiformes) : A mitogenomic perspective.2010

    • Author(s)
      Miya, Masaki, Theodore W.Pietsch, James W.Orr, Takashi P.Satoh, Hsuan-Ching Ho, Rachel Arnold 2 Andrew M.Shedlock, Mitsuomi Shimazak i, Mamoru Yabe, Mutsumi Nishida
    • Organizer
      2010 Joint Meeting of Ichthyologists and Herpetologists
    • Place of Presentation
      Providence,Rhode Island,U.S.A
    • Year and Date
      2010-07-10
    • Related Report
      2010 Annual Research Report
  • [Presentation] 人工種苗アユでも放流河川で再生産に貢献する2010

    • Author(s)
      武島弘彦・高橋芳明・西田睦・坂本崇・井口恵一朗
    • Organizer
      平成22年度日本水産学会春季大会
    • Place of Presentation
      日本大学,藤沢市
    • Year and Date
      2010-03-28
    • Related Report
      2009 Annual Research Report
  • [Presentation] 遺伝資源としての魚類:その多様性と保全への展望2010

    • Author(s)
      西田睦
    • Organizer
      日本動物遺伝育種学会・在来家畜研究会合同シンポジウム「日本における遺伝資源の保護と保全への取り組みとその展望~野生動物、動物園および魚類の立場から~」
    • Place of Presentation
      明治大学,東京都
    • Year and Date
      2010-03-27
    • Related Report
      2009 Annual Research Report
  • [Presentation] Molecular phylogenetic approach to the diversity of fishes2010

    • Author(s)
      Nishida M.
    • Organizer
      International symposium "Toward developing global genetic diversity assessments"
    • Place of Presentation
      Kushu University, Fukuoka. (Invited Lecture)
    • Year and Date
      2010-02-06
    • Related Report
      2010 Final Research Report
  • [Presentation] Molecular phylogenetic approach to the diversity of fishes.2010

    • Author(s)
      Nishida, Mutsumi
    • Organizer
      International symposium "Toward developing global genetic diversity assessments"
    • Place of Presentation
      九州大学,福岡
    • Year and Date
      2010-02-06
    • Related Report
      2009 Annual Research Report
  • [Presentation] 遺伝資源としての魚類 : その多様性と保全への展望2010

    • Author(s)
      西田睦
    • Organizer
      日本動物遺伝育種学会・在来家畜研究会合同シンポジウム「「日本における遺伝資源の保護と保全への取り組みとその展望~野生動物、動物園および魚類の立場から~」
    • Place of Presentation
      東京都(招待講演)
    • Related Report
      2009 Self-evaluation Report
  • [Presentation] Molecular phylogenetic approach to the diversity of fishes2010

    • Author(s)
      Nishida, Mutsumi
    • Organizer
      International symposium "Toward developing global genetic diversity assessments"
    • Place of Presentation
      Fukuoka(Invited Lecture)
    • Related Report
      2009 Self-evaluation Report
  • [Presentation] Molecular phylogeny and diversity of the lancelet genus Branchiostoma based on the whole mitochondrial DNA sequencing and supermatrix analysis.2009

    • Author(s)
      Kon, T., Y.Yamanoue, M.Nishida, T.Nishikawa.
    • Organizer
      International Symposium on Marine Genomics 2009
    • Place of Presentation
      Hotel Southern Plaza Kaiho,沖縄
    • Year and Date
      2009-12-16
    • Related Report
      2009 Annual Research Report
  • [Presentation] 日本のイトヨ自然集団における嗅覚受容体遺伝子群の適応進化2009

    • Author(s)
      橋口康之・西田睦
    • Organizer
      日本魚類学会年会
    • Place of Presentation
      東京海洋大学,東京都
    • Year and Date
      2009-10-12
    • Related Report
      2009 Annual Research Report
  • [Presentation] マルチプレックスPCR法を用いた日本産マンボウ属2種のミトコンドリアDNAの簡易識別法2009

    • Author(s)
      山野上祐介・馬渕浩司・澤井悦郎・橋本博明・西田睦
    • Organizer
      日本魚類学会年会
    • Place of Presentation
      東京海洋大学,東京都
    • Year and Date
      2009-10-12
    • Related Report
      2009 Annual Research Report
  • [Presentation] シーボルトとビュルゲル収集の日本産コイの標本2009

    • Author(s)
      瀬能宏・馬渕浩司・西田睦
    • Organizer
      日本魚類学会年会
    • Place of Presentation
      東京海洋大学,東京都
    • Year and Date
      2009-10-10
    • Related Report
      2009 Annual Research Report
  • [Presentation] ミトコンドリア全長配列に基づくコイ科ラベオ亜科の分子系統解析2009

    • Author(s)
      佐土哲也・斉藤憲治・西田睦・宮正樹
    • Organizer
      日本魚類学会年会
    • Place of Presentation
      東京海洋大学,東京都
    • Year and Date
      2009-10-10
    • Related Report
      2009 Annual Research Report
  • [Presentation] ミトコンドリアゲノム全長配列から推定されたクサウオ科内の系統類縁関係2009

    • Author(s)
      佐藤崇・宮正樹・佐土哲也・松本亜沙子・Alan J.Jamieson・藤井豊展・Peter R.Moller・西田睦
    • Organizer
      日本魚類学会年会
    • Place of Presentation
      東京海洋大学,東京都
    • Year and Date
      2009-10-10
    • Related Report
      2009 Annual Research Report
  • [Presentation] ミトゲノム超行列に基づくコイ目系統の網羅的解析2009

    • Author(s)
      宮正樹・佐土哲也・西田睦
    • Organizer
      日本魚類学会年会
    • Place of Presentation
      東京海洋大学,東京都
    • Year and Date
      2009-10-10
    • Related Report
      2009 Annual Research Report
  • [Presentation] パラオから得られたハゼ亜目シラスウオ属魚類の隠蔽種2009

    • Author(s)
      昆健志・吉野哲夫・西田睦
    • Organizer
      日本魚類学会年会
    • Place of Presentation
      東京海洋大学,東京都
    • Year and Date
      2009-10-10
    • Related Report
      2009 Annual Research Report
  • [Presentation] 琉球列島における在来フナと移植フナの分布と生息場所の比較2009

    • Author(s)
      高田未来美・立原一憲・西田睦
    • Organizer
      日本魚類学会年会
    • Place of Presentation
      東京海洋大学,東京都
    • Year and Date
      2009-10-10
    • Related Report
      2009 Annual Research Report
  • [Presentation] Phylogeny-dependent intron-loss evolution of hatching enzyme genes in Teleostei.2009

    • Author(s)
      Kawaguchi, M., S.Yasumasu, J.Hiroi, I.Iuchi, M.Miya, M.Nishida
    • Organizer
      13th Evolutionary Biology Meeting
    • Place of Presentation
      Marseilles, France
    • Year and Date
      2009-09-23
    • Related Report
      2009 Annual Research Report
  • [Presentation] 孵化酵素と卵膜の分子共進化:Fundulusとメダカ間における種特異的卵膜分解機構2009

    • Author(s)
      川口眞理・安増茂樹・清水昭男・井内一郎・西田睦
    • Organizer
      日本動物学会第80回大会
    • Place of Presentation
      静岡グランシップ,静岡市
    • Year and Date
      2009-09-17
    • Related Report
      2009 Annual Research Report
  • [Presentation] 嗅覚シグナル伝達経路に関与するフォスフォジエステラーゼ1C遺伝子の多重化がもたらす効果についてのパスウェイシミュレーションを用いた検討2009

    • Author(s)
      佐藤行人・橋口康之・西田睦
    • Organizer
      日本遺伝学会第81回年会
    • Place of Presentation
      信州大学,松本市
    • Year and Date
      2009-09-17
    • Related Report
      2009 Annual Research Report
  • [Presentation] 魚類のミトコンドリア系統進化ゲノミクス:現状と展望.ワークショップ「脊椎動物の高次系統と分子進化」2009

    • Author(s)
      宮正樹・西田睦
    • Organizer
      日本進化学会大会
    • Place of Presentation
      北海道大学,札幌
    • Year and Date
      2009-09-03
    • Related Report
      2009 Annual Research Report
  • [Presentation] Cypriniformes Tree of Life : Phylogenetic informativeness of amino acid substitutions and protein structure changes in four nuclear genes for inferring relationships of cypriniform fishes.2009

    • Author(s)
      Bart, H., R.Mayden, R.Wood, A.Simon, K.Saitoh, M.Miya, M.Nishida, P.Reneau, W.J.Chen, K.Tang, T.Sado, M.Doosey, L.Yang, V.Hirt, M.Agnew
    • Organizer
      2009 Annual Meeting of the American Society of Ichthyologists and Herpetologist
    • Place of Presentation
      Portland, Oregon, U.S.A.
    • Year and Date
      2009-07-26
    • Related Report
      2009 Annual Research Report
  • [Presentation] Species specificity of egg envelope digestion by hatching enzymes of sticklebacks Gasterosteus aculeatus and Pungitius sinensis : a molecular aspect of coevolution of protease and proteinous substrate.2009

    • Author(s)
      Kawaguchi, M., S.Yasumasu, H.Takahashi, I.Iuchi, M.Nishida.
    • Organizer
      6th International Conference on Stickleback Behaviour and Evolution
    • Place of Presentation
      Leicester, U.K.
    • Year and Date
      2009-07-14
    • Related Report
      2009 Annual Research Report
  • [Presentation] 魚類多様性の進化を探る:分子系統学からのアプローチ2009

    • Author(s)
      西田睦
    • Organizer
      日本大学平成21年度大学院特別講義(生物資源科学研究科・生物資源生産科学専攻)
    • Place of Presentation
      日本大学会館,東京
    • Year and Date
      2009-06-24
    • Related Report
      2009 Annual Research Report
  • [Presentation] Identification of 10 major lineages within the Clupeoidei based on mitogenomes comparison.2009

    • Author(s)
      Lavoue, S., M.Miya, P.Musikasinthorn, M.Nishida
    • Organizer
      8th Indo-Pacific Fish Conference
    • Place of Presentation
      Perth, Australia
    • Year and Date
      2009-06-05
    • Related Report
      2009 Annual Research Report
  • [Presentation] The origin of the paedomorphic fish Schindleria (Gobioidei) inferred from whole mitochondrial DNA sequences.2009

    • Author(s)
      Kon, T., M.Miya, L.Ruber, M.Nakatani, T.P.Satoh, T.Yoshino, M.Nishida.
    • Organizer
      8th Indo-Pacific Fish Conference
    • Place of Presentation
      Perth, Australia
    • Year and Date
      2009-06-05
    • Related Report
      2009 Annual Research Report
  • [Presentation] 海洋生物研究の意義と課題2009

    • Author(s)
      西田睦
    • Organizer
      福井県立大学海洋生物資源学部開設記念シンポジウム「海からの贈り物を利用した地域づくり」
    • Place of Presentation
      福井県立大学,福井県
    • Year and Date
      2009-04-18
    • Related Report
      2009 Annual Research Report
  • [Presentation] トラフグ・インスリン様成長因子1のイントロン配列および各種成長関連遺伝子の仔魚期における発現量と成長との関連.2009

    • Author(s)
      古川聡史・黒須洋平・木下滋晴・金子元・武島弘彦・西田睦・渡部終五
    • Organizer
      日本水産学会春季大会
    • Place of Presentation
      東京
    • Related Report
      2008 Annual Research Report
  • [Presentation] Microsatellite and mitochondrial DNA analyses for genetic diversity between two closely related Takifugu pufferfish, torafugu T. rubripes and karasu T. chinensis.2009

    • Author(s)
      R. , Md. Shaheed, S. Furukawa, T. Mochizuki, H. Doi, M. Nishida, and S. watabe
    • Organizer
      日本水産学会春季大会
    • Place of Presentation
      東京
    • Related Report
      2008 Annual Research Report
  • [Presentation] 魚類の進化を探る:その多様性への多面的アプローチ2008

    • Author(s)
      西田睦
    • Organizer
      本部企画シンポジウム「観察から研究へ」日本動物学会大会
    • Place of Presentation
      福岡大学,福岡.(招待講演)
    • Year and Date
      2008-09-06
    • Related Report
      2010 Final Research Report
  • [Presentation] 魚類の進化を探る : その多様性への多面的アプローチ2008

    • Author(s)
      西田睦
    • Organizer
      本部企画シンポジウム, 日本動物学会大会
    • Place of Presentation
      福岡
    • Related Report
      2009 Self-evaluation Report
  • [Presentation] Evolutionary history of fishes : An overview based on 327 whole mitogenome sequences2008

    • Author(s)
      Miya, Masaki, Mutsumi Nishida
    • Organizer
      International Symposium of Systematics and Diversity of Fishes
    • Place of Presentation
      Tokyo(Invited talk)
    • Related Report
      2009 Self-evaluation Report
  • [Presentation] Mitogenomic evaluation of historical biogeography of cichlids toward reliable dating of teleostean divergences.2008

    • Author(s)
      Azuma, Y. , Y. Kumazawa, M. Miya, K. Mabuchi, and M. Nishida
    • Organizer
      Society for Molecular Biology and Evolution
    • Place of Presentation
      Barcelona, Spain
    • Related Report
      2008 Annual Research Report
  • [Presentation] 祖先配列の最尤推定に基づくPGIおよびALDタンパク質電荷の進化解析2008

    • Author(s)
      佐藤行人・西田睦
    • Organizer
      日本進化学会第10回大会
    • Place of Presentation
      東京
    • Related Report
      2008 Annual Research Report
  • [Presentation] イトヨ嗅覚受容体遺伝子群における適応進化の網羅的検索2008

    • Author(s)
      橋口康之・西田睦
    • Organizer
      日本進化学会第10回大会
    • Place of Presentation
      東京
    • Related Report
      2008 Annual Research Report
  • [Presentation] 養鶏進化に隠された多様性: サンゴ礁性シラスウオ属魚類に発見された多くの隠蔽種2008

    • Author(s)
      昆健志・吉野哲夫・向井貴彦・西田睦
    • Organizer
      日本進化学会第10回大会
    • Place of Presentation
      東京
    • Related Report
      2008 Annual Research Report
  • [Presentation] 卵膜タンパク質と孵化酵素の"分子共進化"?: 孵化酵素LCEの魚種特異的卵膜分解.2008

    • Author(s)
      川口眞理・清水昭男・廣井準也・井内一郎・安増茂樹・西田睦
    • Organizer
      日本進化学会第10回大会
    • Place of Presentation
      東京
    • Related Report
      2008 Annual Research Report
  • [Presentation] 魚類特異的ゲノム倍化に由来する多数の重複適伝子の"sub-neofunctionalization"による存続.2008

    • Author(s)
      佐藤行人・橋口康之・西田睦
    • Organizer
      日本進化学会第10回大会
    • Place of Presentation
      東京
    • Related Report
      2008 Annual Research Report
  • [Presentation] 硬骨魚類の分岐年代推定におけるシクリッド系統地理の有効性.2008

    • Author(s)
      東陽一郎・熊澤慶伯・宮正樹・馬渕浩司・西田睦
    • Organizer
      日本進化学会第10回大会
    • Place of Presentation
      東京
    • Related Report
      2008 Annual Research Report
  • [Presentation] 「ありふれた魚」に隠されていた大きな集団分化: 東アジアのフナの分子系統地理.2008

    • Author(s)
      高田未来美・立原一憲・昆健志・山本軍次・西田睦
    • Organizer
      日本進化学会第10回大会
    • Place of Presentation
      東京
    • Related Report
      2008 Annual Research Report
  • [Presentation] 孵化酵素LCA魚種特異的卵膜分解.2008

    • Author(s)
      川口眞理・清水昭男・廣井準也・井内一郎・安増茂樹・西田睦
    • Organizer
      東京大学生命科学ネットワークシンポジウム2008
    • Place of Presentation
      東京
    • Related Report
      2008 Annual Research Report
  • [Presentation] 魚類の進化を探る: その多様性への多面的アプローチ2008

    • Author(s)
      西田 睦
    • Organizer
      日本動物学会大会
    • Place of Presentation
      福岡
    • Related Report
      2008 Annual Research Report
  • [Presentation] ニシン目に属する2魚種ニシンとカタクチイワシにおける異なる環境に適応した孵化戦略2008

    • Author(s)
      川口眞理・藤田英明・吉崎範夫・廣井準也・岩室祥一・井内一郎・安増茂樹・西田睦
    • Organizer
      日本動物学会大会
    • Place of Presentation
      福岡
    • Related Report
      2008 Annual Research Report
  • [Presentation] アユの適応遺伝子探索におけるHiCEP法の有効性の検証.2008

    • Author(s)
      武島弘彦・東陽一郎・井口恵一朗・西田睦
    • Organizer
      日本魚類学会年会
    • Place of Presentation
      松山
    • Related Report
      2008 Annual Research Report
  • [Presentation] AFLP分析によって明らかになったトラフグ属魚類の自然種間交雑.2008

    • Author(s)
      善家裕太朗・高橋洋・酒井治己・土井啓行・松浦啓一・西田睦
    • Organizer
      日本魚類学会年会
    • Place of Presentation
      松山
    • Related Report
      2008 Annual Research Report
  • [Presentation] 琵琶湖におけるコイの日本在来mtDNAハプロタイプの分布.2008

    • Author(s)
      馬渕浩司・瀬能宏・武島弘彦・中井克樹・西田睦
    • Organizer
      日本魚類学会年会
    • Place of Presentation
      松山
    • Related Report
      2008 Annual Research Report
  • [Presentation] イトヨ自然集団における嗅覚受容体遺伝子ファミリーの適応進化.2008

    • Author(s)
      橋口康之・西田睦
    • Organizer
      日本魚類学会年会
    • Place of Presentation
      松山
    • Related Report
      2008 Annual Research Report
  • [Presentation] ミトコンドリアゲノムと11の核遺伝子配列から明らかになったトゲウオ亜目魚類の系統関係.2008

    • Author(s)
      川原玲香・宮正樹・馬渕浩司・西田睦
    • Organizer
      日本魚類学会年会
    • Place of Presentation
      松山
    • Related Report
      2008 Annual Research Report
  • [Presentation] 幼形進化的シラスウオ属魚類の起源: ミトコシドリアゲノム全長配列による分子系統解析.2008

    • Author(s)
      昆健志・宮正樹・R. Lukas・中谷将典・佐藤崇・吉野哲夫・西田睦
    • Organizer
      日本魚類学会年会
    • Place of Presentation
      松山
    • Related Report
      2008 Annual Research Report
  • [Presentation] ミトコンドリアゲノム全塩基配列に基づくトウゴロウイウシ系魚類の分子系統.2008

    • Author(s)
      D. H. E. SETIAMARGA・宮正樹・山野上祐介・馬渕浩司・佐藤崇・井上潤・西田睦
    • Organizer
      日本魚類学会年会
    • Place of Presentation
      松山
    • Related Report
      2008 Annual Research Report
  • [Presentation] ダルマガレイ科魚類におけるミトコンドリアゲノムの進化.2008

    • Author(s)
      佐藤崇・宮正樹・西田睦
    • Organizer
      日本魚類学会年会
    • Place of Presentation
      松山
    • Related Report
      2008 Annual Research Report
  • [Presentation] Mitogenomic evidence reveals large genetic divergence between two populations of Pantodon buchholzi.2008

    • Author(s)
      Lavoue, S. , M. Miya, and M. Nishida.
    • Organizer
      Fourth International Conference of the Pan African Fish and Fisheries Association
    • Place of Presentation
      Ethiopia
    • Related Report
      2008 Annual Research Report
  • [Presentation] Zooplankton community genomics-beyond barcoding of marine animals.2008

    • Author(s)
      Machida, R. J. , Y. Hashiguchi, M. Nishida, and S. Nishida
    • Organizer
      50th Anniversary Symposium of SCOR (Science Committee on Ocean Research)
    • Place of Presentation
      Woods Hole, MA, USA
    • Related Report
      2008 Annual Research Report
  • [Presentation] Significance of intensive and extensive genetic analysis of species and their natural populations.2008

    • Author(s)
      Nishida, Mutsumi.
    • Organizer
      Fifth World Fisheries Congress
    • Place of Presentation
      Yokohama
    • Related Report
      2008 Annual Research Report
  • [Presentation] The structural integration of insulin-like growth factor-1 and 2 genes and their regulatory regions in torafugu pufferfish Takifugu rubripes inmlicated for fast growth.2008

    • Author(s)
      Furukawa, S. , H. Takeshima, M. Nishida, and S. Watabe.
    • Organizer
      Fifth World Fisheries Congress
    • Place of Presentation
      Yokohama
    • Related Report
      2008 Annual Research Report
  • [Presentation] 共生褐虫藻から探るムカデミノウミウシと褐虫藻の共生関係の進化.2008

    • Author(s)
      依籐実樹子・川原玲香・馬渕浩司・渡邉俊樹・西田睦
    • Organizer
      日本サンゴ礁学会大会
    • Place of Presentation
      静岡
    • Related Report
      2008 Annual Research Report
  • [Presentation] サンゴ白化現象早期診断のためのストレスバイオマーカー遺伝子の探索.2008

    • Author(s)
      伊藤吉彦・湯山育子・渡邉俊樹・西田睦
    • Organizer
      日本サンゴ礁学会大会
    • Place of Presentation
      静岡
    • Related Report
      2008 Annual Research Report
  • [Presentation] Significance of intensive and extensive genetic analyses of natural populatins in evolution and conservation2008

    • Author(s)
      Nishida, M.
    • Organizer
      International Workshop on Sustainalbe Yield and Population Conservation for Marine Organisms form the Point of View of Genetic Resources
    • Place of Presentation
      Sendai
    • Related Report
      2007 Annual Research Report
  • [Presentation] Evolutionary history of fishes : An Overview based on 327 whole mitogenome sequences2008

    • Author(s)
      Miya, M., M. Nishida
    • Organizer
      International Symposium of Systematics and Diversity of Fishes
    • Place of Presentation
      Tokyo
    • Related Report
      2007 Annual Research Report
  • [Presentation] Rapid radiation and speciation of Takifugu species in marine waters of East Asia : Another use of the fugu, Takifugu rubripes as a model2008

    • Author(s)
      Yamanoue, Y., M. Miya, H. Sakai, K. Matsuura, S. Miyazawa, N. Miyamoto, M. Nishida
    • Organizer
      International Symposium of Systematics and Diversity of Fishes
    • Place of Presentation
      Tokyo
    • Related Report
      2007 Annual Research Report
  • [Presentation] Higher-level relation ships of the Otocephala (Teleostei) inferred form Whole mitogenome sequences2008

    • Author(s)
      Lavoue, S., M. Miya, M. Nishida
    • Organizer
      International Symposium of Systematics and Diversity of Fishes
    • Place of Presentation
      Tokyo
    • Related Report
      2007 Annual Research Report
  • [Presentation] トラフグ・インスリン様成長因子1および2遺伝子のcDNAクローニング2008

    • Author(s)
      古川聡史, 武島弘彦, 西田睦, 渡部終五
    • Organizer
      日本水産学会春季大会
    • Place of Presentation
      静岡
    • Related Report
      2007 Annual Research Report
  • [Presentation] Mitogenomic Evaluation of historical biogeography of cichlids toward reliable dating of teleostean divergences2008

    • Author(s)
      Azuma, Y., Y. Kumazawa, M. Miya, K. Mabuchi, M. Nishida
    • Organizer
      Society for Molecular Biology and Evolution
    • Place of Presentation
      Barcelona, Spain
    • Related Report
      2007 Annual Research Report
  • [Presentation] 新規の嗅覚受容体候補としての脊椎動物TAAR遺伝子ファミリーの進化2007

    • Author(s)
      橋口康之, 西田睦
    • Organizer
      日本進化学会大会
    • Place of Presentation
      京都
    • Year and Date
      2007-08-31
    • Related Report
      2007 Annual Research Report
  • [Presentation] Molecular phylogeny-based approach to evolution of fishes2007

    • Author(s)
      Nishida M.
    • Organizer
      Asia-Africa Evolution Meeting
    • Place of Presentation
      Seimeinomori Resort Nihon Aerobics Center, Chiba
    • Related Report
      2010 Final Research Report
  • [Presentation] Molecular phylogeny-based approach to evolution of fishes2007

    • Author(s)
      Nishida, Mutsumi
    • Organizer
      Asia-Africa Evolution Meeting
    • Place of Presentation
      Mobara, Chiba
    • Related Report
      2009 Self-evaluation Report
  • [Presentation] Patterns of diversifications in modern ray-finned fishes : a mitogenomic overview2007

    • Author(s)
      Miya, M., J. G. Inoue, K. Mabuchi, M. Nishida.
    • Organizer
      Evolution 2007 (Joint Annual Meetings of American Society of Naturalists, Society for the Study of Evolution, and Society of Systematic Biologists)
    • Place of Presentation
      Christchurch, New Zealand
    • Related Report
      2007 Annual Research Report
  • [Presentation] Zooplankton community genomics2007

    • Author(s)
      Machida, R. J., M. Nishida, S. Nishida
    • Organizer
      International Zooplankton Production Symposium
    • Place of Presentation
      Hiroshima
    • Related Report
      2007 Annual Research Report
  • [Presentation] Cryprinformes Tree of Life : Higher-level Relatinship of the Cypriniformes (Actinopterygii : Ostariophysi) Inferred form 152 Whole Mitochondrial Genome Sequences2007

    • Author(s)
      Miya, M., T. Sado, K. Saitoh, H. L. Bart Jr., M. H. Doosey, I. Doadrio, Y. Keivany, J. Shrestha, R. Zardoya, Mutsumi Nishida, Richard L. Mayden
    • Organizer
      ASIH annual meeting
    • Place of Presentation
      St. Louis, Missouri
    • Related Report
      2007 Annual Research Report
  • [Presentation] Zooplankton community genomics : Census of Marine Zooplankton2007

    • Author(s)
      Machida, R. J., M. Nishida, S. Nishida
    • Organizer
      Metageomics 2007: The Second Annual International Conference on Metagenomics, Carifornia Institute for Telecommunication and Information Technology, University of California
    • Place of Presentation
      San Diego, La Jolla
    • Related Report
      2007 Annual Research Report
  • [Presentation] 日本周辺に分布するシオダマリミジンコ Tigriopus laponicus 集団の遺伝的構造解析2007

    • Author(s)
      昆健志, 宮崎亜紀子, 山田創, 西田睦
    • Organizer
      日本学会大会
    • Place of Presentation
      京都
    • Related Report
      2007 Annual Research Report
  • [Presentation] 魚類おける28SrDNA特異的Non-LTR retrotransposon R2の分布と進化2007

    • Author(s)
      瀬戸陽介, 為房潤, 吉武和敏, 小島健司, 尾田正二, 三谷啓志, 朴民根, 西田睦, 藤原晴彦
    • Organizer
      日本進化学会大会
    • Place of Presentation
      京都
    • Related Report
      2007 Annual Research Report
  • [Presentation] 脊椎動物ミトコンドリアゲノムの遺伝子配置の保存性は何によってもたらされているか?2007

    • Author(s)
      佐藤行人, 佐藤崇, 宮正樹, 西田睦
    • Organizer
      日本進化学会大会
    • Place of Presentation
      京都
    • Related Report
      2007 Annual Research Report
  • [Presentation] シクリッドとベラ科魚類にみられる特殊な咽頭顎器官は独立に進化した2007

    • Author(s)
      馬渕浩司, 宮正樹, 東陽一郎, 西田睦
    • Organizer
      日本進化学会大会
    • Place of Presentation
      京都
    • Related Report
      2007 Annual Research Report
  • [Presentation] 魚類の進化を探る-分子系統枠からのアプローチ2007

    • Author(s)
      西田睦
    • Organizer
      京都大学生態学研究センターセミナー
    • Place of Presentation
      大津市
    • Related Report
      2007 Annual Research Report
  • [Presentation] ダム湖定着に成功したアユの分子生態特性2007

    • Author(s)
      武島弘彦, 清水孝昭, 仁部玄通, 西田睦, 井口恵一朗
    • Organizer
      日本応用生態工学会
    • Place of Presentation
      名古屋市
    • Related Report
      2007 Annual Research Report
  • [Presentation] Evolutionary history of fishes : An overview based on 1000 whole mitochondrial genome sequences2007

    • Author(s)
      Miya, M., M. Nishida
    • Organizer
      The Second International Barcode of Life Conference
    • Place of Presentation
      Taipei
    • Related Report
      2007 Annual Research Report
  • [Presentation] Patterns of diversification in modern ray-finned fishes : An overview based on 327 whole mitogenome sequences2007

    • Author(s)
      Miya, M., M. Nishida
    • Organizer
      International Symposium on "The Origin and Evolution of Natural Diversity"
    • Place of Presentation
      Sapporo
    • Related Report
      2007 Annual Research Report
  • [Presentation] Diversification and adaptative evolution of T1R-type receptor genes in threespine stickleback.2007

    • Author(s)
      Hashiguchi, Y., M. Nishida
    • Organizer
      International Symposium on "The Origin and Evolution of Natural Diversity"
    • Place of Presentation
      Sapporo
    • Related Report
      2007 Annual Research Report
  • [Presentation] Concluding remarkds2007

    • Author(s)
      Nishida, Mutsumi
    • Organizer
      International Symposium on "The Origin and Evolution of Natural Diversity"
    • Place of Presentation
      Sapporo
    • Related Report
      2007 Annual Research Report
  • [Presentation] ミトコンドリアゲノム全長配列から推定されたソコダラ科魚類の系統関係2007

    • Author(s)
      佐藤崇, 宮正樹, 遠藤広光, 西田睦
    • Organizer
      日本魚類学会年会
    • Place of Presentation
      札幌
    • Related Report
      2007 Annual Research Report
  • [Presentation] 日本在来型コイの核ゲノムマーカーによる識別2007

    • Author(s)
      馬渕浩司, 瀬能宏, 西田睦
    • Organizer
      日本魚類学会年会
    • Place of Presentation
      札幌
    • Related Report
      2007 Annual Research Report
  • [Presentation] イトヨ味覚受容体遺伝子T1R2の著しい多様化とその起源について2007

    • Author(s)
      橋口康之, 西田睦
    • Organizer
      日本魚類学会年会
    • Place of Presentation
      札幌
    • Related Report
      2007 Annual Research Report
  • [Presentation] コイ目魚類の大系統解明プロジェクト(Cypriniformes Tree of Life): その進展と成果2007

    • Author(s)
      宮正樹, 佐土哲也, 斎藤憲治, 西田睦
    • Organizer
      日本魚類学会年会
    • Place of Presentation
      札幌
    • Related Report
      2007 Annual Research Report
  • [Presentation] サンゴアイゴに見られる遺伝的・形態的2型2007

    • Author(s)
      栗岩薫, 西田睦, 松浦啓一
    • Organizer
      日本魚類学会年会
    • Place of Presentation
      札幌
    • Related Report
      2007 Annual Research Report
  • [Presentation] 中央太平洋産シラスウオ族魚類の分子系統解析2007

    • Author(s)
      昆健志, 吉野哲夫, 西田睦
    • Organizer
      日本魚類学会年会
    • Place of Presentation
      札幌
    • Related Report
      2007 Annual Research Report
  • [Presentation] 沖縄島キバラヨシノボリのミトコンドリアゲノム全塩基配列の決定と島嶼間における遺伝的差異の検討2007

    • Author(s)
      川口亮, 西田睦, 吉野哲夫
    • Organizer
      日本魚類学会年会
    • Place of Presentation
      札幌
    • Related Report
      2007 Annual Research Report
  • [Presentation] Molecular systematics of the deep-sea alepocephaliform fishes (Teleostei) based on whole mitogenome sequences2007

    • Author(s)
      Lavoue, S., M. Miya, J. Poulsen, P. Moller, M. Nishida
    • Organizer
      日本魚類学会年会
    • Place of Presentation
      札幌
    • Related Report
      2007 Annual Research Report
  • [Presentation] Trophic segregation between native and introduces strains of the common carp (Cyprinus carpio) in Japan : insights from molecular and stable isotape analyses2007

    • Author(s)
      Matsuzaki, S. S., K. Mabuchi, N. Takamura, M. Nishida, B. Hicks, I. Washitani
    • Organizer
      Special Symposium : Biology of Cypriniformes
    • Place of Presentation
      Thailand
    • Related Report
      2007 Annual Research Report
  • [Presentation] Higher-level relationships of the Otocephala based on whole mitogenomes sequences : implications for the origin of the Otophysi and Cypriniformes2007

    • Author(s)
      Lavoue, S., M. Miya, M. Nishida
    • Organizer
      Special Symposium : Biology of Cypriniformes
    • Place of Presentation
      Thailand
    • Related Report
      2007 Annual Research Report
  • [Presentation] Resolving power of mitochondrial genomic data for interrelationships among cypriniform fishes (Actinopterygii : Ostariophysi)2007

    • Author(s)
      Saitoh, K., T. Sado, M. H. Doosey, H. L. Bart, Jr., R. L. Mayden, M. Nishida, M. Miya
    • Organizer
      Special Symposium : Biology of Cypriniformes
    • Place of Presentation
      Thailand
    • Related Report
      2007 Annual Research Report
  • [Presentation] Molecular phylogeny-based approach to evolution of fishes.2007

    • Author(s)
      Nishida, M.
    • Organizer
      Asia-Africa Evolution Meeting
    • Place of Presentation
      Chiba
    • Related Report
      2007 Annual Research Report
  • [Presentation] Diversification and adaptive evolution of T1R-type taste recepetr genes in threespine sticklebac2007

    • Author(s)
      Hashiguchi, Y., M. Nishida
    • Organizer
      Asia-Africa Evolution Meeting
    • Place of Presentation
      Chiba
    • Related Report
      2007 Annual Research Report
  • [Book] 図説日本の河川2010

    • Author(s)
      小倉紀雄・島谷幸宏・谷田一三(編)
    • Total Pages
      176
    • Publisher
      朝倉書店
    • Related Report
      2009 Annual Research Report
  • [Book] 海洋の生命史-生命は海でどのように進化したか2009

    • Author(s)
      西田睦(編著)
    • Total Pages
      420
    • Publisher
      東海大学出版会
    • Related Report
      2010 Final Research Report 2009 Annual Research Report
  • [Book] 海洋の生命史-生命は海でどのように進化したか2009

    • Author(s)
      西田睦, (編著)
    • Total Pages
      420
    • Publisher
      東海大学出版会
    • Related Report
      2009 Self-evaluation Report
  • [Book] 生物系統地理学-種の進化を探る2008

    • Author(s)
      ジョン・C・エイビス, 著, 西田睦・武藤文人, (監訳)
    • Total Pages
      303
    • Publisher
      東京大学出版会
    • Related Report
      2009 Self-evaluation Report
  • [Book] 生物系統地理学-種の起源をさぐる2008

    • Author(s)
      ジョン・C・エイビス著, 西田睦 ・武藤文人(監訳)
    • Total Pages
      303
    • Publisher
      東京大学出版会
    • Related Report
      2008 Annual Research Report
  • [Book] 保全遺伝学入門2007

    • Author(s)
      R. Frankham・J. D. Ballou・D. A. Briscoe, 著, 西田睦, (監訳)・高橋洋, (訳)・山崎裕治, (訳)・渡辺勝敏, (訳)
    • Total Pages
      751
    • Publisher
      文一総合出版
    • Related Report
      2009 Self-evaluation Report
  • [Book] 保全遺伝学入門2007

    • Author(s)
      R. Frankham, J. D. Ballou, D. A. Briscoe, 著 西田睦, 監訳, 高橋洋, 山崎裕治, 渡辺勝敏, 訳
    • Total Pages
      751
    • Publisher
      文一総合出版
    • Related Report
      2007 Annual Research Report
  • [Remarks] ホームページ等

    • URL

      http://darwin.ori.u-tokyo.ac.jp/Nishidalab/

    • Related Report
      2010 Final Research Report
  • [Remarks] 大気海洋研究所 海洋生命科学部門 分子海洋生物学分野 西田睦研究室ホームページ

    • Related Report
      2010 Final Research Report

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Published: 2007-04-01   Modified: 2016-04-21  

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