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Analysis of genetic mechanism determining the crop environmental response by coordinating crop growth model and genetic model

Research Project

Project/Area Number 19208003
Research Category

Grant-in-Aid for Scientific Research (A)

Allocation TypeSingle-year Grants
Section一般
Research Field Crop science/Weed science
Research InstitutionNational Institute for Agro-Environmental Sciences

Principal Investigator

HASEGAWA Toshihiro  National Institute for Agro-Environmental Sciences, 大気環境研究領域, 上席研究員 (10228455)

Co-Investigator(Kenkyū-buntansha) NAKAGAWA Hiroshi  石川県立大学, 生物資源環境学部, 准教授 (90207738)
MOCHIZUKI Toshihiro  九州大学, 大学院・農学研究院, 准教授 (60239572)
IWATA Hiroyoshi  独立行政法人農業・食品産業技術総合研究機構, 中央農業総合研究センター・データマイニング研究チーム, 主任研究員 (00355489)
OHSAWA Ryo  筑波大学, 生命環境科学研究科, 准教授 (80211788)
HAYASHI Takeshi  独立行政法人農業生物資源研究所, 動物科学研究領域, 主任研究員 (70370674)
NIMOMIYA Seishi  独立行政法人農業・食品産業技術総合研究機構, 中央農業総合研究センター, 研究管理監 (90355488)
Project Period (FY) 2007 – 2009
Project Status Completed (Fiscal Year 2009)
Budget Amount *help
¥28,990,000 (Direct Cost: ¥22,300,000、Indirect Cost: ¥6,690,000)
Fiscal Year 2009: ¥10,140,000 (Direct Cost: ¥7,800,000、Indirect Cost: ¥2,340,000)
Fiscal Year 2008: ¥10,140,000 (Direct Cost: ¥7,800,000、Indirect Cost: ¥2,340,000)
Fiscal Year 2007: ¥8,710,000 (Direct Cost: ¥6,700,000、Indirect Cost: ¥2,010,000)
Keywords発育生理学 / 遺伝学 / モデル化 / イネ / 環境応答 / 早晩性
Research Abstract

The crop genotypes and environment interaction has long been a major field of the study in both breeding and crop physiology, and will become more important in the future under climate change. Up to now, the effects of genotypes and environments on crop phenotypes are analyzed rather independently, but should be analyzed more interactively. In this study, we grew 174 rice genotypes derived form Koshihikari/Kasalath whose genetic information is known at five sites that are widely different in their growth environments. We then analyzed environmental responses of heading stage with a new analytical method coupling crop growth model and genetic model. This proposed method detected specific regions of chromosomes that are linked to environmental responses of heading, some of which could not be detected with a conventional method using single-environment data, so can be used to bridge gaps between genes and environmental responses of the crop.

Report

(4 results)
  • 2009 Annual Research Report   Final Research Report ( PDF )
  • 2008 Annual Research Report
  • 2007 Annual Research Report
  • Research Products

    (47 results)

All 2010 2009 2008 2007

All Journal Article (20 results) (of which Peer Reviewed: 18 results) Presentation (25 results) Book (2 results)

  • [Journal Article] Physiological and morphological traits related to water use by three rice genotypes grown under aerobic rice systems2010

    • Author(s)
      Matsuo, N.K. Ozawa., T. Mochizuki
    • Journal Title

      Oryza sativa L. (in press.)

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Physiological and morphological traits related to water use by three rice(Oryza sativa L.)genotypes grown under aerobic rice systems2010

    • Author(s)
      MATSUO, N., K.OZAWA, T.MOCHIZUKI
    • Journal Title

      Plant and Soil (in press)

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Growth and yield of six rice cultivars under three water-saving cultivations2009

    • Author(s)
      Matsuo, N., Mochizuki T.
    • Journal Title

      Plant Production Science 12

      Pages: 514-525

    • NAID

      130004462198

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Genotypic differences in root traits of rice (Oryza sativa L. ) seedlings grown under different soil environments2009

    • Author(s)
      Matsuo, N., Mochizuki, T.
    • Journal Title

      Plant Root 3

      Pages: 16-25

    • NAID

      130000137949

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Genotypic variation in rice yield enhancement by elevated CO2 relates to growth before heading, and not to maturity group2009

    • Author(s)
      Shimono, H., Okada M, Yamakawa Y, Nakamura H, Kobayashi K, Hasegawa T.
    • Journal Title

      Journal of Experimental Botany 60

      Pages: 523-532

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Genotypic differences in root traits of rice(Oryza sativa L.)seedlings grown under different soil environments2009

    • Author(s)
      MATSUO, N., T.MOCHIZUKI
    • Journal Title

      Plant Root 3

      Pages: 16-25

    • NAID

      130000137949

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Growth and yield of six rice cultivars under three water-saving cultivations2009

    • Author(s)
      MATSUO, N., T.MOCHIZUKI
    • Journal Title

      Plant Production Science 12

      Pages: 514-525

    • NAID

      130004462198

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 気候変化がイネを中心とした作物栽培におよぼす影響と適応策.日本農学会編「地球温暖化問題への農学の挑戦」2009

    • Author(s)
      長谷川利拡
    • Journal Title

      養賢堂

      Pages: 27-47

    • Related Report
      2008 Annual Research Report
  • [Journal Article] Genotypic variation in rice yield enhancement by elevated CO2 relates to growth before heading, and not to maturity group2009

    • Author(s)
      Shimono H.
    • Journal Title

      Journal of Experimental Botany 60

      Pages: 523-532

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Genotypic differences in root traits of rice (Oryza sativa L.) seedlings grown under different soil environments2009

    • Author(s)
      Matsuo N.
    • Journal Title

      Plant Root 3(印刷中)

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Assessment of three water-saving cultivations and different growth responses among six rice cultivars2009

    • Author(s)
      Matsuo N.
    • Journal Title

      Plant Production Science 12(印刷中)

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Genotypic differences in root hydraulic conductance of rice (Oryza sativa L. ) in response to water regimes2008

    • Author(s)
      Matsuo, N.
    • Journal Title

      Plant and Soil 316

      Pages: 25-34

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] A Bayesian method for simultaneously detecting mendelian and imprinted quantitative trait loci in experimental crosses of outbred species2008

    • Author(s)
      Hayashi, T.
    • Journal Title

      Genetics 178

      Pages: 527-538

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] 地球温暖化で作物の生育はどうなるのかーコメとムギ.渡邉紹裕編「地球温暖化と農業-地域の食料生産はどうなるのか」2008

    • Author(s)
      中川博視
    • Journal Title

      昭和堂

      Pages: 117-160

    • Related Report
      2008 Annual Research Report
  • [Journal Article] Genotypic differences in root hydraulic conductance of rice (Oryza sativa L.) in response to water regimes2008

    • Author(s)
      Matsuo N.
    • Journal Title

      Plant and Soil 316

      Pages: 25-34

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A Bayesian method for simultaneously detectingg mendelian and imprinted quantitative trait loci in experimental crosses of outbred species2008

    • Author(s)
      Hayashi T.
    • Journal Title

      Genetics 178

      Pages: 527-538

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Genetic analysis for floating ability in rice2008

    • Author(s)
      Kawano R.
    • Journal Title

      Breeding Science 58

      Pages: 47-54

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Modeling the Effects of Water Temperature on Rice Growth and Yield under a Cool Climate:I.Model Development2007

    • Author(s)
      Shimono H.
    • Journal Title

      Agronomy Journal 99

      Pages: 1327-1337

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Modeling the Effects of Water Temperature on Rice Growth and Yield under a Cool Climate:II.Model application2007

    • Author(s)
      Shimono H.
    • Journal Title

      Agronomy Journal 99

      Pages: 1338-1344

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A model explaining genotypic and ontogenetic variation of leaf photosynthetic rate in rice(Oryza sativa L.)based on leaf nitrogen content and stomatal conductance2007

    • Author(s)
      Ohsumi A.
    • Journal Title

      Annals of Botany 99

      Pages: 265-273

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Presentation] イネ育苗期おける二酸化炭素濃度上昇の応答に関するqtlsの検出2010

    • Author(s)
      程為国・酒井英光・林武司・長谷川利拡
    • Organizer
      日本作物学会第229回講演会
    • Place of Presentation
      宇都宮大学農学部
    • Year and Date
      2010-03-30
    • Related Report
      2009 Final Research Report
  • [Presentation] イネ育苗期おける二酸化炭素濃度上昇の応答に関するQTLsの検出2010

    • Author(s)
      程為国・酒井英光・林武司・長谷川利拡
    • Organizer
      日本作物学会第229回講演会
    • Place of Presentation
      宇都宮大学農学部
    • Year and Date
      2010-03-30
    • Related Report
      2009 Annual Research Report
  • [Presentation] Modeling the environmental response of crop and its genotypic Variation2009

    • Author(s)
      Hasegawa, T. Nakagawa H, Mochizuki T.
    • Organizer
      農研機構国際シンポジウム「育種の新パラダイム高効率育種のためのゲノム情報・遺伝資源の戦略的活用
    • Year and Date
      2009-12-04
    • Related Report
      2009 Final Research Report
  • [Presentation] Modeling the environmental response of crop and its genotypic variation2009

    • Author(s)
      Hasetawa, T.Nakagawa H, Mochizuki T.
    • Organizer
      農研機構国際シンポジウム「育種の新パラダイム高効率育種のためのゲノム情報・遺伝資源の戦略的活用」
    • Place of Presentation
      Tsukuba, Japan
    • Year and Date
      2009-12-04
    • Related Report
      2009 Annual Research Report
  • [Presentation] Quantitative assessment of Soybean plant shape during growth development based on sequential image analysis2009

    • Author(s)
      Ohsawa, R., S. Minagawa, Y. Okumoto
    • Organizer
      International Symposium of Biological Shape Analysis
    • Place of Presentation
      Tsukuba
    • Year and Date
      2009-06-04
    • Related Report
      2009 Final Research Report
  • [Presentation] Quantitative assessment of Soybean plant shape during growth development based on sequential image analysis2009

    • Author(s)
      Ohsawa, R., S.Minagawa, Y.Okumoto
    • Organizer
      International Symposium of Biological Shape Analysis
    • Place of Presentation
      Tsukuba, Japan
    • Year and Date
      2009-06-04
    • Related Report
      2009 Annual Research Report
  • [Presentation] 作物生産性を決めるのは遺伝子か、環境か?2009

    • Author(s)
      中川博視
    • Organizer
      日本作物学会・日本育種学会
    • Place of Presentation
      つくば
    • Year and Date
      2009-03-27
    • Related Report
      2009 Annual Research Report 2009 Final Research Report
  • [Presentation] 高CO2濃度、温暖化環境における作物生産2009

    • Author(s)
      長谷川利拡
    • Organizer
      日本農業気象学会2009年全国大会
    • Place of Presentation
      郡山市民交流プラザ, 福島県農業総合センター
    • Related Report
      2009 Final Research Report
  • [Presentation] 高CO_2濃度、温暖化環境における作物生産2009

    • Author(s)
      長谷川利拡
    • Organizer
      日本農業気象学会2009年全国大会
    • Place of Presentation
      郡山市民交流プラザ, 福島県農業総合センター
    • Related Report
      2008 Annual Research Report
  • [Presentation] ダイズとツルマメの浸透交雑の可能性に関する調査3.野生種との競合条件下における適応関連形質のQTL解析2008

    • Author(s)
      住谷真理子
    • Organizer
      日本育種学会
    • Place of Presentation
      滋賀県立大学
    • Year and Date
      2008-10-11
    • Related Report
      2009 Final Research Report 2008 Annual Research Report
  • [Presentation] 発育パラメータを用いた水稲品種の発育特性の分類2008

    • Author(s)
      中川博視
    • Organizer
      日本作物学会
    • Place of Presentation
      神戸大学
    • Year and Date
      2008-09-24
    • Related Report
      2009 Final Research Report 2008 Annual Research Report
  • [Presentation] Aerobic rice栽培におけるイネ(Oryza sativa L. )の反応性の品種間差異. 1.気孔コンダクタンスおよび葉の含水率2008

    • Author(s)
      松尾直樹
    • Organizer
      日本作物学会
    • Place of Presentation
      農林水産技術会議事務局筑波事務所
    • Year and Date
      2008-03-27
    • Related Report
      2009 Final Research Report
  • [Presentation] Aerobic rice栽培におけるイネ(Oryza sativa L. )の反応性の品種間差異. 2.根長密度および通導コンダクタンス2008

    • Author(s)
      松尾直樹
    • Organizer
      日本作物学会
    • Place of Presentation
      農林水産技術会議事務局筑波事務所
    • Year and Date
      2008-03-27
    • Related Report
      2009 Final Research Report
  • [Presentation] Aerobic rice栽培におけるイネ(Oryza sativa L.)の反応性の品種間差異.1.気孔コンダクタンスおよび葉の含水率2008

    • Author(s)
      松尾 直樹
    • Organizer
      日本作物学会
    • Place of Presentation
      農林水産技術会議事務局筑波事務所
    • Year and Date
      2008-03-27
    • Related Report
      2007 Annual Research Report
  • [Presentation] Aerobic rice栽培におけるイネ(Oryza sativa L.)の反応性の品種間差異.2.根長密度および通導コンダクタンス2008

    • Author(s)
      松尾 直樹
    • Organizer
      日本作物学会
    • Place of Presentation
      農林水産技術会議事務局筑波事務所
    • Year and Date
      2008-03-27
    • Related Report
      2007 Annual Research Report
  • [Presentation] Predicting climate change impacts on rice agriculture2008

    • Author(s)
      Hasegawa T
    • Organizer
      ICSC2008 5th International Crop Science Congress & Exhibition
    • Place of Presentation
      済州島大韓民国
    • Related Report
      2009 Final Research Report
  • [Presentation] Effect of water-saving irrigation on yield, water productivity and water status in rice (Oryza sativa L. )2008

    • Author(s)
      Matsuo N
    • Organizer
      The 5th International Crop Science Congress and Exhibition
    • Place of Presentation
      済州島、大韓民国
    • Related Report
      2009 Final Research Report
  • [Presentation] Rice modeling issues-from climate change perspectives-, International Symposium on Crop Modeling and Decision Support2008

    • Author(s)
      Hasegawa T
    • Organizer
      ISCMDS-2008 International Symposium on Crop Modeling and Decision Support
    • Place of Presentation
      南京農業大学、中国
    • Related Report
      2009 Final Research Report
  • [Presentation] Rice modeling issues-from climate change perspectives-, International Symposium on Crop Modeling and Decision Support2008

    • Author(s)
      Hasegawa T.
    • Organizer
      ISCMDS-2008 International Symposium on Crop Modeling and Decision Support
    • Place of Presentation
      南京農業大学,中国
    • Related Report
      2008 Annual Research Report
  • [Presentation] Predicting climate change impacts on rice agriculture2008

    • Author(s)
      Hasegawa T.
    • Organizer
      ICSC2008 5th International Crop Science Congress & Exhibition
    • Place of Presentation
      済州島、大韓民国
    • Related Report
      2008 Annual Research Report
  • [Presentation] Effect of water-saving irrigation on yield, water productivity and water status in rice (Oryza sativa L.)2008

    • Author(s)
      Matsuo N.
    • Organizer
      The 5th International Crop Science Congress and Exhibition
    • Place of Presentation
      済州島、大韓民国
    • Related Report
      2008 Annual Research Report
  • [Presentation] 日本における水稲の収量ポテンシャルの推定-生育モデルからのアプローチ2007

    • Author(s)
      長谷川利拡
    • Organizer
      日本作物学会
    • Place of Presentation
      金沢大学角間キャンパス
    • Year and Date
      2007-09-27
    • Related Report
      2009 Final Research Report 2007 Annual Research Report
  • [Presentation] 日本の水稲収量の地域間差異の生育モデルを用いた解析2007

    • Author(s)
      長谷川利拡
    • Organizer
      日本作物学会
    • Place of Presentation
      金沢大学角間キャンパス
    • Year and Date
      2007-09-27
    • Related Report
      2009 Final Research Report 2007 Annual Research Report
  • [Presentation] Bayesian multilocus association mapping on ordinal and censored traits and its application to the analysis of genetic variation among Oryza sativa L. germplasms2007

    • Author(s)
      Iwata, H.
    • Organizer
      The 3rd International Conference of Quantitative Genetics
    • Place of Presentation
      浙江大学, 杭州, 中国
    • Related Report
      2009 Final Research Report
  • [Presentation] Bayesian multiocus association mapping on ordinal and censored traits and its application to the analysis of genetic variation among Oryza sativa L.germplasms2007

    • Author(s)
      Iwata H.
    • Organizer
      The 3rd International Conference of Quantitative Genetics
    • Place of Presentation
      浙江大学(中国、杭州)
    • Related Report
      2007 Annual Research Report
  • [Book] 第2章気候変化がイネを中心とした作物栽培に及ぼす影響と適応策, シリーズ21世紀の農学「地球温暖化問題への農学の挑戦」2009

    • Author(s)
      長谷川利拡
    • Publisher
      (株)養賢堂
    • Related Report
      2009 Final Research Report
  • [Book] 地球温暖化で作物の生育はどうなるのか-コメとムギ, 「地球温暖化と農業-地域の食料生産はどうなるのか」2008

    • Author(s)
      中川博視
    • Publisher
      昭和堂
    • Related Report
      2009 Final Research Report

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Published: 2007-04-01   Modified: 2016-04-21  

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