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Advanced computation methods for analyzing scientific data

Research Project

Project/Area Number 19300045
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Intelligent informatics
Research InstitutionJapan Advanced Institute of Science and Technology

Principal Investigator

HO Tu・Bao  Japan Advanced Institute of Science and Technology, 知識科学研究科, 教授 (60301199)

Co-Investigator(Kenkyū-buntansha) TAKABAYASHI Katsuhiko  千葉大学, 医学部附属病院, 教授 (90188079)
KAWASAKI Saori  北陸先端科学技術大学院大学, 知識科学研究科, 助教 (40377437)
DAM Hieu Chi  北陸先端科学技術大学院大学, 知識科学研究科, 講師 (70397230)
Project Period (FY) 2007 – 2009
Project Status Completed (Fiscal Year 2009)
Budget Amount *help
¥18,070,000 (Direct Cost: ¥13,900,000、Indirect Cost: ¥4,170,000)
Fiscal Year 2009: ¥4,420,000 (Direct Cost: ¥3,400,000、Indirect Cost: ¥1,020,000)
Fiscal Year 2008: ¥5,070,000 (Direct Cost: ¥3,900,000、Indirect Cost: ¥1,170,000)
Fiscal Year 2007: ¥8,580,000 (Direct Cost: ¥6,600,000、Indirect Cost: ¥1,980,000)
Keywordsデータマイニング / 構造化データ / 知識発見 / 科学データ
Research Abstract

The project objective is twofold. First to establish basic technologies and to develop efficient and effective machine learning/data mining methods for hard problems caused by complexly structured data, in particularly methods in the two directions : (1) kernel methods ; (2) semi-supervised learning for structured prediction. Second is to apply the developed methods for new discovery in medical bioinformatics and materials science. As the result of the project, different methods have been developed and applied to solve problems in biomedicine and materials science.

Report

(4 results)
  • 2009 Annual Research Report   Final Research Report ( PDF )
  • 2008 Annual Research Report
  • 2007 Annual Research Report
  • Research Products

    (116 results)

All 2011 2010 2009 2008 2007

All Journal Article (61 results) (of which Peer Reviewed: 61 results) Presentation (45 results) Book (10 results)

  • [Journal Article] MicroRNA expression profiles for classification and analysis of tumor samples2011

    • Author(s)
      Tran, D.H., Ho, T.B., Pham, T.H., Satou, K.
    • Journal Title

      IEICE Trans.Information Systems (accepted).

    • NAID

      10028232115

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Privacy Preserving Frequency Mining in 2-Part Fully Distributed Setting2010

    • Author(s)
      Luong, T.D., Ho, T.B.
    • Journal Title

      IEICE Trans.Information Systems Vol.E93-D, No.10

      Pages: 2701-2708

    • NAID

      10027641009

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Enhancing Privacy in Distributed Data Clustering2010

    • Author(s)
      Luong, T.D., Ho, T.B.
    • Journal Title

      Journal of Computer Science and Cybernetics Vol.26, No.2

      Pages: 1-15

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Sequence-dependent histone variant positioning signatures2010

    • Author(s)
      Le, N.T., Ho, T.B., Ho, B.H.
    • Journal Title

      BMC Genomics Vol.11(Suppl 4)

      Pages: 1-9

    • NAID

      120003338958

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Computational Discovery of miR-TF Regulatory Modules in Human Genome2010

    • Author(s)
      Tran, D.H., Satou, K., Ho, T.B., Pham, T.H.
    • Journal Title

      Bioinformation 4(8)

      Pages: 371-377

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Ab initio study of the polymerisation of cyclopentasilane2010

    • Author(s)
      Sugiyama, A., Shimoda, T., Dam, H.C.
    • Journal Title

      Molecular Physics 108

      Pages: 1649-1653

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] First principles study of the physisorption of hydrogen molecule on graphene and carbon nanotube surfaces adhered by Pt atom2010

    • Author(s)
      Pham, T.L., Phan, V.D., Sugiyama, A., Shimoda, T., Dam, H.C.
    • Journal Title

      Journal of Computational Materials Science 49(1)

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] First principles study of the thermally induced polymerization of cyclopentasilane2010

    • Author(s)
      Phan V.D., Pham T.L., A.Sugiyama, T.Shimoda, Dam H.C.
    • Journal Title

      Computational Materials Science 49(1)

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Ab initio study of the polymerization of cyclopentasilane2010

    • Author(s)
      Sugiyama, A., Shimoda, T., Dam H.C.
    • Journal Title

      Molecular Physics. (accepted)

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Computational Discovery of miR-TF Regulatory Modules in Human Genome2010

    • Author(s)
      Tran, D.H., Satou, K., Ho, T.B., Pham, T.H.
    • Journal Title

      Bioinformation

      Volume: 4(8) Pages: 371-377

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Privacy Preserving Frequency Mining in 2-Part Fully Distributed Setting2010

    • Author(s)
      Luong, T.D., Ho, T.B.
    • Journal Title

      IEICE Trans.Information Systems

      Volume: Vol.E93-D No.10(cond.accepted) Pages: 2702-2708

    • NAID

      10027641009

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] First principles study of the physisisorption of hydrogen molecule on graphene and carbon nanotube adhered by Pt atom (doi:10.1016/j.commatsci.2010.02.041)2010

    • Author(s)
      Pham T.L., A.Sugiyama, T.Shimoda, A.Fujiwara, Dam H.C.
    • Journal Title

      Computational Materials Science

      Volume: 49

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] First principles study of the thermally induced polymerizationof cyclopentasilane (doi:10.1016/j.commatsci2010.02.042)2010

    • Author(s)
      Phan V.D., Pham T.L., Sugiyama, A., T.Shimoda, Dam H.C.
    • Journal Title

      Computational materials Science

      Volume: 49

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Ab initio study of the polymerization of cyclopentasilane2010

    • Author(s)
      A.Sugiyama, T.Shimoda, Dam H.C.
    • Journal Title

      Molecular Physics

      Volume: 108(accepted) Pages: 1649-1653

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Characterizing nucleosome dynamics from genomic and epigenetic information using rule induction learning2009

    • Author(s)
      Le, N.T., Ho, T.B., Tran, D.H.
    • Journal Title

      BMC Genomics 10(Suppl.3)

    • NAID

      120002511611

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Augmented Mutual Information for Multiword Extraction2009

    • Author(s)
      Zhang, W., Yoshida, T., Ho, T.B., Tang, X.
    • Journal Title

      International Journal of Innovative Computing, Information and Control Vol.5, No.2

      Pages: 543-554

    • NAID

      120002511612

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Improving effectiveness of mutual information for substantial multiword expression extraction2009

    • Author(s)
      Zhang, W., Yoshida, T., Tang, X., Ho, T.B.
    • Journal Title

      Expert Systems with Applications (Elsevier) Vol.36, No.8

      Pages: 10919-10930

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Substrate-mediated interactions of Pt atoms adsorbed on single-wall carbon nanotubes : Density functional calculations2009

    • Author(s)
      Dam H.C., Nguyen T.C., Sugiyama, A., Ozaki, T., Fujiwara, A., Mitani, T., Okada, S.
    • Journal Title

      Physical Review B 79(11)

      Pages: 115426-115426

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] A systematic study of influence of ligand substitutions on the electronic structure and magnetic properties of Mn4 single-molecule magnets2009

    • Author(s)
      Nguyen, A.T., Katayama, S., Dam, H.C.
    • Journal Title

      Physical Chemistry Chemical Physics 11

      Pages: 717-729

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Density functional study of Pt4 clusters adsorbed on a carbonnanotube support2009

    • Author(s)
      Nguyen T.C., A.Sugiyama, A.Fujiwara, T.Mitani, Dam H.C.
    • Journal Title

      Physical Review B 79(23)

      Pages: 235417-235417

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Effects of Carbon supports on Pt nano-cluster catalyst2009

    • Author(s)
      Nguyen, T.C., Fujiwara, A., Mitani, T., Dam, H.C.
    • Journal Title

      Computational Materials Science 44

      Pages: 163-166

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Augmented Mutual Information for Multiword Extraction2009

    • Author(s)
      Zhang, W., Yoshida, T., Ho, T.B., Tang, X.
    • Journal Title

      International Journal of Innovative Computing, Information and Control

      Volume: 5(2) Pages: 543-554

    • NAID

      120002511612

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Improving effectiveness of mutual information for substantival multiword expression extraction2009

    • Author(s)
      Zhang, W., Yoshida, T., Tang, X., Ho, T.B.
    • Journal Title

      Expert Systems with Applications

      Volume: 36(8) Pages: 10919-10930

    • NAID

      120002511613

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Characterizing nucleosome dynamics from genomic and epigenetic information using rule induction learning2009

    • Author(s)
      Le, N.T., Ho, T.B., Tran, D.H.
    • Journal Title

      BMC Genomics

      Volume: 10(Suppl.3)

    • NAID

      120002511611

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Substrate-mediated interactions of Pt atoms adsorbed on single-wall carbon nanotubes : Density functional calculations2009

    • Author(s)
      Dam H.C., Nguyen T.C., Sugiyama, A., Ozaki, T., Fujiwara, A., Mitani, T., Okada, S.
    • Journal Title

      Physical Review B

      Volume: 79 Pages: 115426-115426

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Density functional study of Pt4 clusters adsorbed on a carbonnanotube support2009

    • Author(s)
      Nguyen T.C., A.Sugiyama, A.Fujiwara, T.Mitani, Dam H.C.
    • Journal Title

      Physical Review B

      Volume: 79 Pages: 235417-235417

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A Systematic Study of Influence of Ligand Substitutions on the Electronic Structure and Magnetic Properties of Mn_4 Single-Molecule Magnets2009

    • Author(s)
      Nguyen, A. T., Katayama, S., Dam, H. C.
    • Journal Title

      Physical Chemistry Chemical Physics (PCCP) 11

      Pages: 717-729

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Substrate-mediated interactions of Pt atoms adsorbed on single-wall carbon nanotubes : Density functional calculations2009

    • Author(s)
      Dam, H. C., Nguyen, T. C., Sugiyama, A., Ozaki, T., Fujiwara, A., Mitani, T., Okada, S.
    • Journal Title

      Physical Review B (PRB) 79

      Pages: 115426-115426

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Augmented Mutual Information for Multi-word Extraction2009

    • Author(s)
      Zhang, W., Yoshida, T., Ho, T. B., Tang, X.
    • Journal Title

      International Journal of Innovative Computing, Information and Control (JICIC) 5(2)

      Pages: 543-554

    • NAID

      120002511612

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Improving effectiveness of mutual information for substantial multiword expression extraction2009

    • Author(s)
      Zhang, W., Yoshida, T., Tang, X., Ho, T. B.
    • Journal Title

      Expert Systems with Applications (ESA) 36(7)(In press)

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] An Efficient Kernel Matrix Evaluation Measure2008

    • Author(s)
      Nguyen, C.H., Ho, T.B.
    • Journal Title

      Pattern Recognition (Elsevier) 41(11)

      Pages: 3366-3372

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] An Integrative Domain-Based Approach to Predicting Protein-Protein Interactions2008

    • Author(s)
      Nguyen, T.P., Ho, T.B.
    • Journal Title

      Journal of Bioinformatics and Computational Biology (Imperial College Press.) Vol.6, Issue 6

      Pages: 1115-1132

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Finding microRNA regulatory modules in human genome using rule induction2008

    • Author(s)
      Tran, D.H., Satou, K., Ho, T.B.
    • Journal Title

      Journal BMC Bioinfor matics (MedCentral.) Vol.9, No.Supp 11

      Pages: 1-10

    • NAID

      120001746786

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Prediction of human microRNA hairpin using only positive sample learning2008

    • Author(s)
      Tran, D.H., Pham, T.H., Satou, K., Ho, T.B.
    • Journal Title

      Journal of Biomedical Science and Engineering (JBiSE)(Scientific Research Publishing.) Vol.1, Issue 2

      Pages: 141-146

    • NAID

      120001746787

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Vietnamese Language Processing : Issues and Challenges2008

    • Author(s)
      Ho, T.B.
    • Journal Title

      Special Issue in Journal of Science, Natural Sciences and Technology (Vietnam National University-Hanoi Publishers) Vol.24, N3S

      Pages: 10-16

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] The role of ligands in controlling the electronic structureand magnetic properties of Mn4 single-molecule magnets2008

    • Author(s)
      Nguyen, A.T., Katayama, S., Dam, H.C.
    • Journal Title

      Computational Materials Science 44

      Pages: 111-116

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Issues and First Phase Development of the English-Vietnamese Translation System EVSMT1.02008

    • Author(s)
      Ho, T.B., Pham, N.K., Ha, T.L., Nguyen, P.T.
    • Journal Title

      Special Issue in Journal of Science, Natural Sciences and Technology (Vietnam National University-Hanoi Publishers) Vol.24, N3S

      Pages: 59-66

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] An Efficient Kernel Matrix Evaluation Measure2008

    • Author(s)
      Nguyen, C. H., Ho, T. B.
    • Journal Title

      Pattern Recognition (PR) 41(11)

      Pages: 3366-3372

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] An Integrative Domain-Based Approach to Predicting Protein-Protein Interactions2008

    • Author(s)
      Nguyen, T. P., Ho, T. B.
    • Journal Title

      Journal of Bioinformatics and Computational Biology (JBCB) 6(6)

      Pages: 1115-1132

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Prediction of human microRNA hairpin using only positive sample learning2008

    • Author(s)
      Tran, D. H., Pham, T. H., Satou, K., Ho, T. B.
    • Journal Title

      Journal of Biomedical Science and Engineering (JBSE) 1(2)

      Pages: 141-146

    • NAID

      120001746787

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Finding microRNA regulatory modules in human genome using rule induction2008

    • Author(s)
      Tran, D. H., Satou, K., Ho, T. B.
    • Journal Title

      Journal BMC Bioinformatics 9 (Sup. 11)

      Pages: 1-10

    • NAID

      120001746786

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Vietnamese Language Processing : Issues and Challenges2008

    • Author(s)
      Ho, T. B.
    • Journal Title

      Journal of Science, Natural Sciences and Technology (JSNST) 24(3S)

      Pages: 10-16

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Issues and First Phase Development of the English-Vietnamese Translation System EVSMT1.02008

    • Author(s)
      Ho, T. B., Pham, N. K., Ha, T. L., Nguyen, P. T.
    • Journal Title

      Journal of Science, Natural Sciences and Technology (JSNST) 24(3S)

      Pages: 59-66

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Effects of Carbon Supports on Pt Nano-cluster Catalyst2008

    • Author(s)
      Nguyen, T. C., Fujiwara, A., Mitani, T., Dam, H. C.
    • Journal Title

      Journal of Computational Materials Science (JCMS) 44

      Pages: 163-166

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Theoretical Study of the Effect of a Solvent on the Adsorption of Pt Atom on a Graphene Surface2008

    • Author(s)
      Park, S., Ahn, J., Sugiyama, A., Dam, H. C.
    • Journal Title

      Journal of the Korean Physical Society (JKPS) 53

      Pages: 1642-1645

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] An Efficient Kernel Matrix Evaluation Measure2008

    • Author(s)
      Nguyen, C.H., Ho, TB.
    • Journal Title

      Pattern Recognition (In press)

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] An Integrative Domain-Based Approach to Predicting Protein-Protein Interactions2008

    • Author(s)
      Nguyen, T.P., Ho, T.B.
    • Journal Title

      Journal of Bioinformatics and Computational Biology (In press)

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Simple but effective methods of combining kernels for the prediction problem in biology2008

    • Author(s)
      Tanabe, H., Ho, T.B., Nguyen, C.H., Kawasaki, S.
    • Journal Title

      IEEE International Conference on Research, Innovation, and Vision for the Futurein Computing and Communication Technoloeies (In press)

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Adsorption and diffusion of Pt atoms on single-walled carbon nanotubes2008

    • Author(s)
      Dam Hieu Chi, Nguyen Thanh Cuong, Ayumu Sugiyama, Taisuke Ozaki, Akihiko Fujiwara, Tadaoki Mitani, Susumu Okada
    • Journal Title

      Physical Review (In press)

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Effects of Carbon Supports on Pt Nano-cluster Catalyst2008

    • Author(s)
      Nguyen Thanh Cuong, Akihiko Fujiwara, Tadaoki Mitani, Dam Hieu Chi
    • Journal Title

      Jourual of Computational Materials Science doi:10.1016

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Integration of learning methods, medical literature and expert inspection in medical data mining2007

    • Author(s)
      Ho, T.B., Kawasaki, S., Takabayashi, K., Nguyen, C.H.
    • Journal Title

      IEICE Trans.Information and Systems Vol.E90-D, No.10

      Pages: 1574-1581

    • NAID

      110007538562

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Exploiting Temporal Relations in Mining Hepatitis Data2007

    • Author(s)
      Ho, T.B., Nguyen, C.H., Kawasaki, S., Le,S.Q., Takabayashi, K.
    • Journal Title

      Journal of New Generation Computing (Ohmsha, Ltd.and Springer-Verlag) Vol.25, No.3

      Pages: 247-262

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Decision making under uncertainty with fuzzy targets2007

    • Author(s)
      Huynh, V.N., Nakamori, Y., M. Ryoke, Ho, T.B.
    • Journal Title

      Fuzzy Optimization and Decision Making (Springer) Volume 6, Issue 3

      Pages: 255-278

    • NAID

      120000861775

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] A hyper-heuristic for descriptive rule induction2007

    • Author(s)
      Pham, T.H., Ho, T.B.
    • Journal Title

      International Journal of Data Warehousing and Mining Vol.3, No.1

      Pages: 54-66

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] An Agent-Based Approach to Solve Dynamic Meeting Scheduling Problems with Preference2007

    • Author(s)
      Ben Hassine, A., Ho, T.B.
    • Journal Title

      International Journal of Engineering Applications of Artificial Intelligence (Elsevier Publishers) Volume 20, Issue 6

      Pages: 857-873

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Temporal Relations Extraction in Mining Hepatitis Data2007

    • Author(s)
      Ho, T.B., Nguyen, C.H., Kawasaki, S., Le, S.Q., Takabayashi, K.
    • Journal Title

      Journal of New Generation Computing 25-3

      Pages: 247-262

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A hyper-heuristic for descriptive rule induction2007

    • Author(s)
      Pham, T.H., Ho, T.B
    • Journal Title

      International Journal of Data Warehousing and Mining 3-3

      Pages: 54-66

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] An Agent-Based Approach to Solve Dynamic Meeting Schendling Problems with Preference2007

    • Author(s)
      Ben Hassine, A., Ho, T.B.
    • Journal Title

      International Journal of Engineering Applications of Artificial Intelligence 20-6

      Pages: 857-873

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Exploiting Temporal Relations in Mining Hepatitis Data2007

    • Author(s)
      Nguyen, T.P., Ho, T.B.
    • Journal Title

      Journal of New Generation Computing 25-3

      Pages: 247-262

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Decision making under uncertainty with fuzzy targets2007

    • Author(s)
      Huynh, V.N., Nakamori, Y., M.Ryoke, Ho, T.B.
    • Journal Title

      Fuzzy Optimization and Decision Making 6

      Pages: 255-278

    • NAID

      120000861775

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Kernel Matrix Evaluation2007

    • Author(s)
      Nguyen, C.H., Ho, T.B.
    • Journal Title

      International Journal of Engineering Applications of Artificial Intelligence 20-6

      Pages: 857-873

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Presentation] Simulation-based Data Mining Solution to the Structure of Water Surrounding Proteins.2011

    • Author(s)
      Dam, H.C., Ho, T.B., Sugiyama, A.
    • Organizer
      International Join Conference on Artificial Intelligence (IJCAI-2011)
    • Place of Presentation
      Barcelona, Spain.
    • Related Report
      2009 Final Research Report
  • [Presentation] Mining parallel documents across Web sites2010

    • Author(s)
      Pham, N.K., Ho, T.B.
    • Organizer
      The Sixth Asia Information Retrieval Societies Conference AIRS 2010
    • Place of Presentation
      Taipei, Taiwan.
    • Related Report
      2009 Final Research Report
  • [Presentation] Discovering Relationship between Hepatitis C Virus NS5A Protein and Interferon/Ribavirin Therapy2010

    • Author(s)
      Kawasaki, S., Ho, T.B., Kanda, T., Yokosuka, O., Takabayashi, K., Le, T.N.
    • Organizer
      International Conference on Knowledge, Information and Creativity Support Systems (Best paper award).
    • Place of Presentation
      Chiangmai, Thailand
    • Related Report
      2009 Final Research Report
  • [Presentation] Quantitatively assessing the effect of regulatory factors on nucleosome dynamics2010

    • Author(s)
      Ho, B.H., Le, N.T., Ho, T.B.
    • Organizer
      IEEE-RIVF International Conference on Computing and Communication Technologies
    • Place of Presentation
      Hanoi, Vietnam.
    • Related Report
      2009 Final Research Report
  • [Presentation] サポートベクターマシンによる蛋白質水和水の物性解析2009

    • Author(s)
      杉山歩, 水上卓, Dam H.C, Ho T.B.
    • Organizer
      第三回分子科学討論会
    • Place of Presentation
      名古屋(ポスター発表)
    • Year and Date
      2009-09-23
    • Related Report
      2009 Annual Research Report
  • [Presentation] Support Vector Machine Study for Dynamical Water Classification Problem in Biosystems2009

    • Author(s)
      Sugiyama, A., Mizukami, T., Dam, H.C., Ho, T.B.
    • Organizer
      International Conference on Knowledge, Information and Creativity Support Systems (KICSS 2009)(7-16)
    • Place of Presentation
      Seoul, Korea
    • Related Report
      2009 Final Research Report
  • [Presentation] Towards service-oriented knowledge discovery in biomedicine research2009

    • Author(s)
      Ho, T.B., Takabayashi, K., Pham, T.H., Nguyen, T.P., Kawasaki, S., Tran, D.H.
    • Organizer
      International Workshop on Third Generation Data Mining, ECML/PKDD 2009 (100-113)
    • Place of Presentation
      Bled, Slovenia
    • Related Report
      2009 Final Research Report
  • [Presentation] An Empirical Study of Vietnamese Noun Phrase Chunking with Discriminative Sequence Models2009

    • Author(s)
      Nguyen, L.M., Nguyen, H.T., Nguyen, P.T., Ho, T.B., Shimazu, A.
    • Organizer
      7th Workshop on Asian Language Resources at 47th Annual Meeting of the Association for Computational Linguistics, ACL-IJCNLP (9-16)
    • Place of Presentation
      Singapore, Singapore
    • Related Report
      2009 Final Research Report
  • [Presentation] Privacy preserving EM-based Clustering2009

    • Author(s)
      Luong, T.D., Ho, T.B.
    • Organizer
      IEEE RIVF International Conference on Computing and Communication Technologies (RIVF09, 111-117, IEEE Press.)
    • Place of Presentation
      Da Nang, Vietnam
    • Related Report
      2009 Final Research Report
  • [Presentation] Privacy preserving EM-based Clustering2009

    • Author(s)
      Luong, T.D., Ho, T.B.
    • Organizer
      IEEE RIVF International Conference on Computing and Communication Technologies
    • Place of Presentation
      Da Nang, Viet Nam
    • Related Report
      2009 Annual Research Report
  • [Presentation] Towards service-oriented knowledge discovery in biomedicine Research2009

    • Author(s)
      Ho, T.B., Takabayashi, K., Pham T.H., Nguyen, T.P., Kawasaki, S., Tran, D.H.
    • Organizer
      International Workshop on Third Generation Data Mining, ECML/PKDD 2009
    • Place of Presentation
      Bled, Slovenia
    • Related Report
      2009 Annual Research Report
  • [Presentation] An Empirical Study of Vietnamese Noun Phrase Chunking with Discriminative Sequence Models2009

    • Author(s)
      Nguyen, L.M., Nguyen, H.T, Nguyen, P.T., Ho, T.B., Shimazu, A.
    • Organizer
      7th Workshop on Asian Language Resources at 47th Annual Meeting of the Association for Computational Linguistics, ACL-IJCNLP 2009
    • Place of Presentation
      Singapore
    • Related Report
      2009 Annual Research Report
  • [Presentation] Support Vector Machine Study for Dynamical Water Classification Problem in Biosystems2009

    • Author(s)
      Sugiyama, A., Mizukami, T, Dam, H.C., Ho, T.B.
    • Organizer
      Fourth International Conference on Knowledge, Information and Creativity Support Systems (KICSS 2009)
    • Place of Presentation
      Seoul, Korea(口頭発表)
    • Related Report
      2009 Annual Research Report
  • [Presentation] Waters Mediate Interaction between Proteins : An Observation by data Mining Method2009

    • Author(s)
      Sugiyama, A., T.Mizukami, Dam H.C., Ho T.B.
    • Organizer
      5th Conference of the Asian Consortium on Computational Materials Science
    • Place of Presentation
      Hanoi, Vietnam(ポスター発表)
    • Related Report
      2009 Annual Research Report
  • [Presentation] Pt nano cluster on Carbon Nanotube support2009

    • Author(s)
      Dam H.C.
    • Organizer
      The 5th Conference of the Asian Consortium on Computational Materials Science (ACCMS-5)
    • Place of Presentation
      Hanoi, Vietnam(招待講演)
    • Related Report
      2009 Annual Research Report
  • [Presentation] Theoretical Study of the CO Electro catalytic Oxidation over Pt Clusters Supported by Carbon Nanotube2009

    • Author(s)
      Dam H.C.
    • Organizer
      International Conference on Materials for Advanced Technologies
    • Place of Presentation
      Singapore(口頭発表)
    • Related Report
      2009 Annual Research Report
  • [Presentation] First principles study of the physisorption of hydrogen molecule on grap hene and carbon nanotube surfaces adhered by Pt atom2009

    • Author(s)
      Pham T.L., Phan V.D., A.Sugiyama, A.Fujiwara, Dam H.C.
    • Organizer
      International Conference on Materials for Advanced Technologies
    • Place of Presentation
      Singapore(口頭発表)
    • Related Report
      2009 Annual Research Report
  • [Presentation] Integration of Word Sense Disambiguation into Phrase-Based Statistical Machine Translation2008

    • Author(s)
      Nguyen, P. T., Le, A. C., Shimazu, A., Ho, T. B.
    • Organizer
      Empirical Methods for Asian Language Processing Workshop (AMALP'08)
    • Place of Presentation
      Hanoi, Vietnam
    • Year and Date
      2008-12-15
    • Related Report
      2008 Annual Research Report
  • [Presentation] Combinatorial effects of histone modifications and DNA sequences on nucleosome dynamics2008

    • Author(s)
      Le, N. T., Tran, D. H., Ho, T. B.
    • Organizer
      International Workshop on Knowledge, Language, and Learning in Bioinformatics (KLLBI'08)
    • Place of Presentation
      Hanoi, Vietnam
    • Year and Date
      2008-12-15
    • Related Report
      2008 Annual Research Report
  • [Presentation] A computational method for classifying and analyzing tumor samples using microRNA expression profiles2008

    • Author(s)
      Tran, D.H., Ho, T.B., Satou, K., Pham, T.H.
    • Organizer
      International Conference on Knowledge, Information and Creativity Support Systems (KICSS 2008)(120-127)(Student Best Paper Award).
    • Place of Presentation
      Hanoi, Vietnam
    • Related Report
      2009 Final Research Report
  • [Presentation] A Tree-to-String Phrase-based Model for Statistical Machine Translation2008

    • Author(s)
      Nguyen, P.T., Shimazu, A., Ho, T.B., Nguyen, L.M., Nguyen, V.V.
    • Organizer
      Twelfth Conference on Computational Natural Language Learning (143-150)
    • Place of Presentation
      Manchester, U.K.
    • Related Report
      2009 Final Research Report
  • [Presentation] Simple but effective methods of combining kernels for the prediction problem in biology2008

    • Author(s)
      Tanabe, H., Ho, T.B., Nguyen, C.H., Kawasaki, S.
    • Organizer
      IEEE RIVF International Conference on Computing and Communication Technologies (RIVF 08,IEEE Press, 71-78)
    • Place of Presentation
      Ho Chi Minh City,Vietnam
    • Related Report
      2009 Final Research Report
  • [Presentation] Estimating Quality of Support Vector Machines Learning Under Probabilistic and Interval Uncertainty : Algorithms and Computational Complexity2008

    • Author(s)
      Nguyen, C.H., Ho, T.B., Kreinovich, V.
    • Organizer
      International Workshop on Interval/Probabilistic Uncertainty and Non-Classical Logics (UncLog'08)(Advances in Soft Computing 46, Springer, 57-69)
    • Place of Presentation
      Kanazawa, Japan
    • Related Report
      2009 Final Research Report
  • [Presentation] Construeting Signal Transduction Networks Using Multiple Signaling Feature Data2008

    • Author(s)
      Nguyen, T. P., Satou, K., Ho, T. B., Takabayashi, K.
    • Organizer
      Statistical and Relational Learning in Bioinformatics 2008 Workshop (SRLB'08)
    • Place of Presentation
      Antwerp, Belgium
    • Related Report
      2008 Annual Research Report
  • [Presentation] Simple but effective methods of combining kernels for the prediction problem in biology2008

    • Author(s)
      Tanabe, H., Ho, T. B., Nguyen, C. H., Kawasaki, S.
    • Organizer
      IEEE International Conference on Research, Innovation, and Vision for the Future in Computing and Communication Technologies, (RIVF'08)
    • Place of Presentation
      Ho Chi Minh City, Vietnam
    • Related Report
      2008 Annual Research Report
  • [Presentation] A Tree-to-String Phrase-based Model for Statistical Machine Translation2008

    • Author(s)
      Nguyen, P. T., Shimazu, A., Ho, T. B., Nguyen, L. M., Nguyen, V. V.
    • Organizer
      Twelfth Conference on Computational Natural Language Learning (CNLL'08)
    • Place of Presentation
      Manchester, UK
    • Related Report
      2008 Annual Research Report
  • [Presentation] Privacy Preserving for Multivariate Outlier Detection2008

    • Author(s)
      Luong, T. D., Ho, T. B.
    • Organizer
      Third International Conference on Knowledge, Information and Creativity Support Systems (KICSS'08)
    • Place of Presentation
      Hanoi, Vietnam
    • Related Report
      2008 Annual Research Report
  • [Presentation] A computational method for classifying and analyzing tumor samples using microRNA expression profiles (Student Best Paper Award).2008

    • Author(s)
      Tran, D. H., Ho, T. B., Satou, K., Pham, T. H.
    • Organizer
      Third International Conference on Knowledge, Information and Creativity Support Systems (KICSS'08)
    • Place of Presentation
      Hanoi, Vietnam
    • Related Report
      2008 Annual Research Report
  • [Presentation] Feature Similarity : Geometrical Modeling and Discriminative Kernel Learning2008

    • Author(s)
      Nguyen, C. H., Ho, T. B.
    • Organizer
      3^<rd> International Workshop on Data Mining and Statistical Science (DMSS'08)
    • Place of Presentation
      Tokyo, Japan
    • Related Report
      2008 Annual Research Report
  • [Presentation] Vietnamese Language Processing : Issues and Challenges (招待講演)http : //www. hanoiforum. vnu. edu. vn/index. phn? option=cnm_content&task=blogcategory&id=294&Itemid=7152008

    • Author(s)
      Ho, T. B.
    • Organizer
      Symposium at Hanoi Forum on Information, Communication Technology 2008 (ICT-Hanoi'08)
    • Place of Presentation
      Tokyo, Japan
    • Related Report
      2008 Annual Research Report
  • [Presentation] Estimating Quality of SupPort Vector Machines Learning Under Probabilstic and Interval Uncertainty: Algorithms and Computational Cbmplexity2008

    • Author(s)
      Nguyen, C.H., Ho, T.B., Kreinovich, V.
    • Organizer
      International Workshop on IntervalノProbabilistic Uncertainty and Non-Classical Logics (UncLog'08)
    • Place of Presentation
      金沢市
    • Related Report
      2007 Annual Research Report
  • [Presentation] 密度汎関数計算によるカーボンナノチューブに吸着された金属クラスターの電子状態に関する研究2007

    • Author(s)
      杉山 歩, Dam Hieu Chi
    • Organizer
      第一回分子科学討論会
    • Place of Presentation
      仙台
    • Year and Date
      2007-09-17
    • Related Report
      2007 Annual Research Report
  • [Presentation] First-principles investigation for the transport properties of single wall carbon nanotube2007

    • Author(s)
      A.Sugiyama, Dam Hieu Chi, Nguyen Thanh Cuong, T.Ozaki, T.Mitani
    • Organizer
      The 4th conference of the Asian Consortium on Computational Materials Science
    • Place of Presentation
      韓国Seoul
    • Year and Date
      2007-09-14
    • Related Report
      2007 Annual Research Report
  • [Presentation] Prediction of Histone Modifications in DNA sequences2007

    • Author(s)
      Pham, T.H., Ho, T.B., Tran, D.H., Satou, K.
    • Organizer
      IEEE 7th International Symposium on Bioinformatics & Bioengineering (IEEE BIBE 2007)(959-966)
    • Place of Presentation
      Cambridge-Boston, U.S.A.
    • Related Report
      2009 Final Research Report
  • [Presentation] Temporal Abstraction and Data Mining with Visualization of Laboratory Data2007

    • Author(s)
      Takabayashi, K., Ho, T.B., Yokoi, H., Nguyen, T.D., Kawasaki, S., Le, S.Q., Suzuki, T., Yokosuka, O.
    • Organizer
      Medinfo 2007 Congress (IOI Press, 1304-1308)
    • Place of Presentation
      Brisbane, Australia
    • Related Report
      2009 Final Research Report
  • [Presentation] Combining Domain Fusions and Domain-Domain Interactions to Predict Protein-Protein Interactions2007

    • Author(s)
      Nguyen, T.P., Ho, T.B.
    • Organizer
      Workshop on Data Mining in Bioinformatics BIOKDD07 (13th International Conference on Knowledge Discovery and Data Mining ACM SIGKDD 2007, 27-34)
    • Place of Presentation
      San Jose, U.S.A.
    • Related Report
      2009 Final Research Report
  • [Presentation] Combining Domain Fusions and Domain-Domain Interactions to Predict Protein-Protein Interactions2007

    • Author(s)
      Nguyen, T.P., Ho, T.B.
    • Organizer
      Workshop on Data Mining in Bioinformatics BIOKDD07, 13th International Conference on Knowledge Discovery and Data Mining ACMSIGKDD2007
    • Place of Presentation
      米国サンノゼ
    • Related Report
      2007 Annual Research Report
  • [Presentation] Temporal Abstraction and Data Mining with Visualization of Laboratory Data2007

    • Author(s)
      Takabayashi, T., Ho, T.B., Yokoi, H., Nguyen, T.D., Kawasaki, S., Le, S.Q., Suzuki, T., Yokosuka, O.
    • Organizer
      Medinfo 2007 Congress
    • Place of Presentation
      オーストラリアBrisbane
    • Related Report
      2007 Annual Research Report
  • [Presentation] Prediction of Histone Modifications in DNA sequences2007

    • Author(s)
      Pham, T.H., Ho., T.B., D.H., Satou, K.
    • Organizer
      IEEE 7th International Symposium on Bioinformatics & Bioengineering (IEEE BIBE 2007)
    • Place of Presentation
      米国Boston
    • Related Report
      2007 Annual Research Report
  • [Presentation] Prediction of protein-protein interactions and disease genes by machine learning2007

    • Author(s)
      Nguyen, T.P., Ho, T.B.
    • Organizer
      International Workshop on Data Mining and Statistical Science (DMSS2007)
    • Place of Presentation
      東京
    • Related Report
      2007 Annual Research Report
  • [Presentation] A Semi-Supervised Leaning Approach to Disease Gene Prediction2007

    • Author(s)
      Nguyen, T.P., Ho, T.B.
    • Organizer
      2007 IEEE International Conference on BioInformation and BioMedicine (BIBM 2007)
    • Place of Presentation
      米国Silicon Valley
    • Related Report
      2007 Annual Research Report
  • [Presentation] Effects of carbon supports on Pt Nano-cluster Catalyst2007

    • Author(s)
      Nguyen Thanh Cuong, Dam Hieu Chi, A.Fujiwara and T.Mitani
    • Organizer
      International Conference On Materials for Advanced Technologies
    • Place of Presentation
      Singapore
    • Related Report
      2007 Annual Research Report
  • [Presentation] Catalytic Activity of Pt Clusters supported on Carbon Nanotubes: A first-principles Study2007

    • Author(s)
      Nguyen Thanh Cuong, Dam Hieu Chi, A.Fujiwara and T.Mitani
    • Organizer
      International Conference on the Applications of Density Functional Theory
    • Place of Presentation
      オランダAmsterdam
    • Related Report
      2007 Annual Research Report
  • [Presentation] Prediction of Protein-Protein Interactions Using Bayesian Networks2007

    • Author(s)
      Nguyen, T.P., Ho, T.B., Nguyen, N.B.
    • Organizer
      The 2nd International Conference on Knowledge, Information and Creativity Support Systems HICSS07
    • Place of Presentation
      石川県
    • Related Report
      2007 Annual Research Report
  • [Presentation] Scientific data mining: a new direction in computational science2007

    • Author(s)
      Ho, T.B., Dam, H.C., Kawasaki, S., Pham, T.H., Nguyen, T.P.
    • Organizer
      Malaysia-Japan International Symposium on Advanced Technology (MJISAT 2007)
    • Place of Presentation
      マレーシアKuala Lumpur
    • Related Report
      2007 Annual Research Report
  • [Book] Knowledge Technology and Science (Knowledge Discovery (Chapter 4))(Y.Nakamori (Ed.))2011

    • Author(s)
      Ho, T.B.
    • Publisher
      CRC Press and Taylor & Francis
    • Related Report
      2009 Final Research Report
  • [Book] Data Mining : Medical, Health, Social and Biological Applications (Mining multiple biological data for reconstructing signal transduction networks)(D.Holmes (Ed.))2011

    • Author(s)
      Nguyen, T.P., Ho, T.B.
    • Publisher
      Springer (to appear).
    • Related Report
      2009 Final Research Report
  • [Book] Proceedings of the 13th Pacific-Asia Conference on Knowledge Discovery and Data Mining, Lecture Notes in Artificial Intelligence LNAI 5476(Advances in Knowledge Discovery and Data Mining (Eds.))2009

    • Author(s)
      Theramunkong, T., Kijsirikul, B, Cercone, N., Ho, T.B.編
    • Total Pages
      1076
    • Publisher
      Springer
    • Related Report
      2009 Annual Research Report
  • [Book] Rational, Robust, and Secure Negotiations in Multi-Agent Systems中 "Asynchronous Constraint-Based Approach : New Solution for any Constraint Problem" (Hassine, B. A., Ho, T. B. 分担執筆, pp. 169-184)2008

    • Author(s)
      Ito, T., Hattori, H., Zhang, M., Matsuo, T. 編
    • Publisher
      Springer
    • Related Report
      2008 Annual Research Report
  • [Book] PRICAI 2008 : Trends in Artificial Intelligence (Eds. ), Proceedings of the 10th Pacific Rim Conference on Artificial Intelligence, Lecture Notes in Artificial Intelligence LNAI 53512008

    • Author(s)
      Ho, T. B., Zhou, Zhi-Hua編
    • Total Pages
      1250
    • Publisher
      Springer
    • Related Report
      2008 Annual Research Report
  • [Book] Advances in Data Warehousing and Mining (Study of protein-protein interactions from multiple data sources)(David Taniar (Ed.))2007

    • Author(s)
      Ho, T.B., Nguyen, T.P., Tran, T.N.
    • Publisher
      IGC Publishers
    • Related Report
      2009 Final Research Report
  • [Book] Handbook of Granular Computing (Rough Document Clustering and the Internet)(Pedrycz, Skowron, Kreinovich (Eds.))2007

    • Author(s)
      Nguyen, H.S., Ho, T.B.
    • Publisher
      John Wiley & Sons.
    • Related Report
      2009 Final Research Report
  • [Book] In Selected Contributions in Data Analysis and Classification (Finding Rules in Data)(P.Brito, P.Ber-trand, G.Cucumel, F.De Carvalho (Eds.))2007

    • Author(s)
      Ho, T.B.
    • Publisher
      Springer
    • Related Report
      2009 Final Research Report
  • [Book] Selected Contributions in Data Analysis and Classification 中"Finding Rules in Data"(Ho, T.B.分担執筆, pp.387-396)2007

    • Author(s)
      P.Brito, P.Ber-trand, G.Cucumel, F.De Carvalho 編集
    • Total Pages
      634
    • Publisher
      Springer
    • Related Report
      2007 Annual Research Report
  • [Book] Advances in Data Warehousing and Mining 中"Study of protein-protein interactions from multiple data sources(Ho, T.B., Nguyen, T.P, Tran, T.N.分担執筆, pp.280-307)"2007

    • Author(s)
      David Talliar 編
    • Total Pages
      379
    • Publisher
      IGC Publishers
    • Related Report
      2007 Annual Research Report

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Published: 2007-04-01   Modified: 2016-04-21  

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