Advanced computation methods for analyzing scientific data

• Project/Area Number: 19300045
• Research Category: Grant-in-Aid for Scientific Research (B)
• Allocation Type: Single-year Grants
• Section: 一般
• Research Field: Intelligent informatics
• Research Institution: Japan Advanced Institute of Science and Technology
• Principal Investigator: HO Tu・Bao Japan Advanced Institute of Science and Technology, 知識科学研究科, 教授 (60301199)
• Co-Investigator(Kenkyū-buntansha): TAKABAYASHI Katsuhiko 千葉大学, 医学部附属病院, 教授 (90188079) ; KAWASAKI Saori 北陸先端科学技術大学院大学, 知識科学研究科, 助教 (40377437) ; DAM Hieu Chi 北陸先端科学技術大学院大学, 知識科学研究科, 講師 (70397230)
• Project Period (FY): 2007 – 2009
• Project Status: Completed (Fiscal Year 2009)
• Budget Amount: ¥18,070,000 (Direct Cost: ¥13,900,000、Indirect Cost: ¥4,170,000); Fiscal Year 2009: ¥4,420,000 (Direct Cost: ¥3,400,000、Indirect Cost: ¥1,020,000); Fiscal Year 2008: ¥5,070,000 (Direct Cost: ¥3,900,000、Indirect Cost: ¥1,170,000); Fiscal Year 2007: ¥8,580,000 (Direct Cost: ¥6,600,000、Indirect Cost: ¥1,980,000)
• Keywords: データマイニング / 構造化データ / 知識発見 / 科学データ

Research Abstract

The project objective is twofold. First to establish basic technologies and to develop efficient and effective machine learning/data mining methods for hard problems caused by complexly structured data, in particularly methods in the two directions : (1) kernel methods ; (2) semi-supervised learning for structured prediction. Second is to apply the developed methods for new discovery in medical bioinformatics and materials science. As the result of the project, different methods have been developed and applied to solve problems in biomedicine and materials science.

Research Products

• [Journal Article] MicroRNA expression profiles for classification and analysis of tumor samples (2011)
  • Author(s): Tran, D.H., Ho, T.B., Pham, T.H., Satou, K.
  • Journal Title: IEICE Trans.Information Systems (accepted).
  • NAID: 10028232115
  • Peer Reviewed
• [Journal Article] Privacy Preserving Frequency Mining in 2-Part Fully Distributed Setting (2010)
  • Author(s): Luong, T.D., Ho, T.B.
  • Journal Title: IEICE Trans.Information Systems Vol.E93-D, No.10 Pages: 2701-2708
  • NAID: 10027641009
  • Peer Reviewed
• [Journal Article] Enhancing Privacy in Distributed Data Clustering (2010)
  • Author(s): Luong, T.D., Ho, T.B.
  • Journal Title: Journal of Computer Science and Cybernetics Vol.26, No.2 Pages: 1-15
  • Peer Reviewed
• [Journal Article] Sequence-dependent histone variant positioning signatures (2010)
  • Author(s): Le, N.T., Ho, T.B., Ho, B.H.
  • Journal Title: BMC Genomics Vol.11(Suppl 4) Pages: 1-9
  • NAID: 120003338958
  • Peer Reviewed
• [Journal Article] Computational Discovery of miR-TF Regulatory Modules in Human Genome (2010)
  • Author(s): Tran, D.H., Satou, K., Ho, T.B., Pham, T.H.
  • Journal Title: Bioinformation 4(8) Pages: 371-377
  • Peer Reviewed
• [Journal Article] Ab initio study of the polymerisation of cyclopentasilane (2010)
  • Author(s): Sugiyama, A., Shimoda, T., Dam, H.C.
  • Journal Title: Molecular Physics 108 Pages: 1649-1653
  • Peer Reviewed
• [Journal Article] First principles study of the physisorption of hydrogen molecule on graphene and carbon nanotube surfaces adhered by Pt atom (2010)
  • Author(s): Pham, T.L., Phan, V.D., Sugiyama, A., Shimoda, T., Dam, H.C.
  • Journal Title: Journal of Computational Materials Science 49(1)
  • Peer Reviewed
• [Journal Article] First principles study of the thermally induced polymerization of cyclopentasilane (2010)
  • Author(s): Phan V.D., Pham T.L., A.Sugiyama, T.Shimoda, Dam H.C.
  • Journal Title: Computational Materials Science 49(1)
  • Peer Reviewed
• [Journal Article] Ab initio study of the polymerization of cyclopentasilane (2010)
  • Author(s): Sugiyama, A., Shimoda, T., Dam H.C.
  • Journal Title: Molecular Physics. (accepted)
  • Peer Reviewed
• [Journal Article] Computational Discovery of miR-TF Regulatory Modules in Human Genome (2010)
  • Author(s): Tran, D.H., Satou, K., Ho, T.B., Pham, T.H.
  • Journal Title: Bioinformation Volume: 4(8) Pages: 371-377
  • Peer Reviewed
• [Journal Article] Privacy Preserving Frequency Mining in 2-Part Fully Distributed Setting (2010)
  • Author(s): Luong, T.D., Ho, T.B.
  • Journal Title: IEICE Trans.Information Systems Volume: Vol.E93-D No.10(cond.accepted) Pages: 2702-2708
  • NAID: 10027641009
  • Peer Reviewed
• [Journal Article] First principles study of the physisisorption of hydrogen molecule on graphene and carbon nanotube adhered by Pt atom (doi:10.1016/j.commatsci.2010.02.041) (2010)
  • Author(s): Pham T.L., A.Sugiyama, T.Shimoda, A.Fujiwara, Dam H.C.
  • Journal Title: Computational Materials Science Volume: 49
  • Peer Reviewed
• [Journal Article] First principles study of the thermally induced polymerizationof cyclopentasilane (doi:10.1016/j.commatsci2010.02.042) (2010)
  • Author(s): Phan V.D., Pham T.L., Sugiyama, A., T.Shimoda, Dam H.C.
  • Journal Title: Computational materials Science Volume: 49
  • Peer Reviewed
• [Journal Article] Ab initio study of the polymerization of cyclopentasilane (2010)
  • Author(s): A.Sugiyama, T.Shimoda, Dam H.C.
  • Journal Title: Molecular Physics Volume: 108(accepted) Pages: 1649-1653
  • Peer Reviewed
• [Journal Article] Characterizing nucleosome dynamics from genomic and epigenetic information using rule induction learning (2009)
  • Author(s): Le, N.T., Ho, T.B., Tran, D.H.
  • Journal Title: BMC Genomics 10(Suppl.3)
  • NAID: 120002511611
  • Peer Reviewed
• [Journal Article] Augmented Mutual Information for Multiword Extraction (2009)
  • Author(s): Zhang, W., Yoshida, T., Ho, T.B., Tang, X.
  • Journal Title: International Journal of Innovative Computing, Information and Control Vol.5, No.2 Pages: 543-554
  • NAID: 120002511612
  • Peer Reviewed
• [Journal Article] Improving effectiveness of mutual information for substantial multiword expression extraction (2009)
  • Author(s): Zhang, W., Yoshida, T., Tang, X., Ho, T.B.
  • Journal Title: Expert Systems with Applications (Elsevier) Vol.36, No.8 Pages: 10919-10930
  • Peer Reviewed
• [Journal Article] Substrate-mediated interactions of Pt atoms adsorbed on single-wall carbon nanotubes : Density functional calculations (2009)
  • Author(s): Dam H.C., Nguyen T.C., Sugiyama, A., Ozaki, T., Fujiwara, A., Mitani, T., Okada, S.
  • Journal Title: Physical Review B 79(11) Pages: 115426-115426
  • Peer Reviewed
• [Journal Article] A systematic study of influence of ligand substitutions on the electronic structure and magnetic properties of Mn4 single-molecule magnets (2009)
  • Author(s): Nguyen, A.T., Katayama, S., Dam, H.C.
  • Journal Title: Physical Chemistry Chemical Physics 11 Pages: 717-729
  • Peer Reviewed
• [Journal Article] Density functional study of Pt4 clusters adsorbed on a carbonnanotube support (2009)
  • Author(s): Nguyen T.C., A.Sugiyama, A.Fujiwara, T.Mitani, Dam H.C.
  • Journal Title: Physical Review B 79(23) Pages: 235417-235417
  • Peer Reviewed
• [Journal Article] Effects of Carbon supports on Pt nano-cluster catalyst (2009)
  • Author(s): Nguyen, T.C., Fujiwara, A., Mitani, T., Dam, H.C.
  • Journal Title: Computational Materials Science 44 Pages: 163-166
  • Peer Reviewed
• [Journal Article] Augmented Mutual Information for Multiword Extraction (2009)
  • Author(s): Zhang, W., Yoshida, T., Ho, T.B., Tang, X.
  • Journal Title: International Journal of Innovative Computing, Information and Control Volume: 5(2) Pages: 543-554
  • NAID: 120002511612
  • Peer Reviewed
• [Journal Article] Improving effectiveness of mutual information for substantival multiword expression extraction (2009)
  • Author(s): Zhang, W., Yoshida, T., Tang, X., Ho, T.B.
  • Journal Title: Expert Systems with Applications Volume: 36(8) Pages: 10919-10930
  • NAID: 120002511613
  • Peer Reviewed
• [Journal Article] Characterizing nucleosome dynamics from genomic and epigenetic information using rule induction learning (2009)
  • Author(s): Le, N.T., Ho, T.B., Tran, D.H.
  • Journal Title: BMC Genomics Volume: 10(Suppl.3)
  • NAID: 120002511611
  • Peer Reviewed
• [Journal Article] Substrate-mediated interactions of Pt atoms adsorbed on single-wall carbon nanotubes : Density functional calculations (2009)
  • Author(s): Dam H.C., Nguyen T.C., Sugiyama, A., Ozaki, T., Fujiwara, A., Mitani, T., Okada, S.
  • Journal Title: Physical Review B Volume: 79 Pages: 115426-115426
  • Peer Reviewed
• [Journal Article] Density functional study of Pt4 clusters adsorbed on a carbonnanotube support (2009)
  • Author(s): Nguyen T.C., A.Sugiyama, A.Fujiwara, T.Mitani, Dam H.C.
  • Journal Title: Physical Review B Volume: 79 Pages: 235417-235417
  • Peer Reviewed
• [Journal Article] A Systematic Study of Influence of Ligand Substitutions on the Electronic Structure and Magnetic Properties of Mn_4 Single-Molecule Magnets (2009)
  • Author(s): Nguyen, A. T., Katayama, S., Dam, H. C.
  • Journal Title: Physical Chemistry Chemical Physics (PCCP) 11 Pages: 717-729
  • Peer Reviewed
• [Journal Article] Substrate-mediated interactions of Pt atoms adsorbed on single-wall carbon nanotubes : Density functional calculations (2009)
  • Author(s): Dam, H. C., Nguyen, T. C., Sugiyama, A., Ozaki, T., Fujiwara, A., Mitani, T., Okada, S.
  • Journal Title: Physical Review B (PRB) 79 Pages: 115426-115426
  • Peer Reviewed
• [Journal Article] Augmented Mutual Information for Multi-word Extraction (2009)
  • Author(s): Zhang, W., Yoshida, T., Ho, T. B., Tang, X.
  • Journal Title: International Journal of Innovative Computing, Information and Control (JICIC) 5(2) Pages: 543-554
  • NAID: 120002511612
  • Peer Reviewed
• [Journal Article] Improving effectiveness of mutual information for substantial multiword expression extraction (2009)
  • Author(s): Zhang, W., Yoshida, T., Tang, X., Ho, T. B.
  • Journal Title: Expert Systems with Applications (ESA) 36(7)(In press)
  • Peer Reviewed
• [Journal Article] An Efficient Kernel Matrix Evaluation Measure (2008)
  • Author(s): Nguyen, C.H., Ho, T.B.
  • Journal Title: Pattern Recognition (Elsevier) 41(11) Pages: 3366-3372
  • Peer Reviewed
• [Journal Article] An Integrative Domain-Based Approach to Predicting Protein-Protein Interactions (2008)
  • Author(s): Nguyen, T.P., Ho, T.B.
  • Journal Title: Journal of Bioinformatics and Computational Biology (Imperial College Press.) Vol.6, Issue 6 Pages: 1115-1132
  • Peer Reviewed
• [Journal Article] Finding microRNA regulatory modules in human genome using rule induction (2008)
  • Author(s): Tran, D.H., Satou, K., Ho, T.B.
  • Journal Title: Journal BMC Bioinfor matics (MedCentral.) Vol.9, No.Supp 11 Pages: 1-10
  • NAID: 120001746786
  • Peer Reviewed
• [Journal Article] Prediction of human microRNA hairpin using only positive sample learning (2008)
  • Author(s): Tran, D.H., Pham, T.H., Satou, K., Ho, T.B.
  • Journal Title: Journal of Biomedical Science and Engineering (JBiSE)(Scientific Research Publishing.) Vol.1, Issue 2 Pages: 141-146
  • NAID: 120001746787
  • Peer Reviewed
• [Journal Article] Vietnamese Language Processing : Issues and Challenges (2008)
  • Author(s): Ho, T.B.
  • Journal Title: Special Issue in Journal of Science, Natural Sciences and Technology (Vietnam National University-Hanoi Publishers) Vol.24, N3S Pages: 10-16
  • Peer Reviewed
• [Journal Article] The role of ligands in controlling the electronic structureand magnetic properties of Mn4 single-molecule magnets (2008)
  • Author(s): Nguyen, A.T., Katayama, S., Dam, H.C.
  • Journal Title: Computational Materials Science 44 Pages: 111-116
  • Peer Reviewed
• [Journal Article] Issues and First Phase Development of the English-Vietnamese Translation System EVSMT1.0 (2008)
  • Author(s): Ho, T.B., Pham, N.K., Ha, T.L., Nguyen, P.T.
  • Journal Title: Special Issue in Journal of Science, Natural Sciences and Technology (Vietnam National University-Hanoi Publishers) Vol.24, N3S Pages: 59-66
  • Peer Reviewed
• [Journal Article] An Efficient Kernel Matrix Evaluation Measure (2008)
  • Author(s): Nguyen, C. H., Ho, T. B.
  • Journal Title: Pattern Recognition (PR) 41(11) Pages: 3366-3372
  • Peer Reviewed
• [Journal Article] An Integrative Domain-Based Approach to Predicting Protein-Protein Interactions (2008)
  • Author(s): Nguyen, T. P., Ho, T. B.
  • Journal Title: Journal of Bioinformatics and Computational Biology (JBCB) 6(6) Pages: 1115-1132
  • Peer Reviewed
• [Journal Article] Prediction of human microRNA hairpin using only positive sample learning (2008)
  • Author(s): Tran, D. H., Pham, T. H., Satou, K., Ho, T. B.
  • Journal Title: Journal of Biomedical Science and Engineering (JBSE) 1(2) Pages: 141-146
  • NAID: 120001746787
  • Peer Reviewed
• [Journal Article] Finding microRNA regulatory modules in human genome using rule induction (2008)
  • Author(s): Tran, D. H., Satou, K., Ho, T. B.
  • Journal Title: Journal BMC Bioinformatics 9 (Sup. 11) Pages: 1-10
  • NAID: 120001746786
  • Peer Reviewed
• [Journal Article] Vietnamese Language Processing : Issues and Challenges (2008)
  • Author(s): Ho, T. B.
  • Journal Title: Journal of Science, Natural Sciences and Technology (JSNST) 24(3S) Pages: 10-16
  • Peer Reviewed
• [Journal Article] Issues and First Phase Development of the English-Vietnamese Translation System EVSMT1.0 (2008)
  • Author(s): Ho, T. B., Pham, N. K., Ha, T. L., Nguyen, P. T.
  • Journal Title: Journal of Science, Natural Sciences and Technology (JSNST) 24(3S) Pages: 59-66
  • Peer Reviewed
• [Journal Article] Effects of Carbon Supports on Pt Nano-cluster Catalyst (2008)
  • Author(s): Nguyen, T. C., Fujiwara, A., Mitani, T., Dam, H. C.
  • Journal Title: Journal of Computational Materials Science (JCMS) 44 Pages: 163-166
  • Peer Reviewed
• [Journal Article] Theoretical Study of the Effect of a Solvent on the Adsorption of Pt Atom on a Graphene Surface (2008)
  • Author(s): Park, S., Ahn, J., Sugiyama, A., Dam, H. C.
  • Journal Title: Journal of the Korean Physical Society (JKPS) 53 Pages: 1642-1645
  • Peer Reviewed
• [Journal Article] An Efficient Kernel Matrix Evaluation Measure (2008)
  • Author(s): Nguyen, C.H., Ho, TB.
  • Journal Title: Pattern Recognition (In press)
  • Peer Reviewed
• [Journal Article] An Integrative Domain-Based Approach to Predicting Protein-Protein Interactions (2008)
  • Author(s): Nguyen, T.P., Ho, T.B.
  • Journal Title: Journal of Bioinformatics and Computational Biology (In press)
  • Peer Reviewed
• [Journal Article] Simple but effective methods of combining kernels for the prediction problem in biology (2008)
  • Author(s): Tanabe, H., Ho, T.B., Nguyen, C.H., Kawasaki, S.
  • Journal Title: IEEE International Conference on Research, Innovation, and Vision for the Futurein Computing and Communication Technoloeies (In press)
  • Peer Reviewed
• [Journal Article] Adsorption and diffusion of Pt atoms on single-walled carbon nanotubes (2008)
  • Author(s): Dam Hieu Chi, Nguyen Thanh Cuong, Ayumu Sugiyama, Taisuke Ozaki, Akihiko Fujiwara, Tadaoki Mitani, Susumu Okada
  • Journal Title: Physical Review (In press)
  • Peer Reviewed
• [Journal Article] Effects of Carbon Supports on Pt Nano-cluster Catalyst (2008)
  • Author(s): Nguyen Thanh Cuong, Akihiko Fujiwara, Tadaoki Mitani, Dam Hieu Chi
  • Journal Title: Jourual of Computational Materials Science doi:10.1016
  • Peer Reviewed
• [Journal Article] Integration of learning methods, medical literature and expert inspection in medical data mining (2007)
  • Author(s): Ho, T.B., Kawasaki, S., Takabayashi, K., Nguyen, C.H.
  • Journal Title: IEICE Trans.Information and Systems Vol.E90-D, No.10 Pages: 1574-1581
  • NAID: 110007538562
  • Peer Reviewed
• [Journal Article] Exploiting Temporal Relations in Mining Hepatitis Data (2007)
  • Author(s): Ho, T.B., Nguyen, C.H., Kawasaki, S., Le,S.Q., Takabayashi, K.
  • Journal Title: Journal of New Generation Computing (Ohmsha, Ltd.and Springer-Verlag) Vol.25, No.3 Pages: 247-262
  • Peer Reviewed
• [Journal Article] Decision making under uncertainty with fuzzy targets (2007)
  • Author(s): Huynh, V.N., Nakamori, Y., M. Ryoke, Ho, T.B.
  • Journal Title: Fuzzy Optimization and Decision Making (Springer) Volume 6, Issue 3 Pages: 255-278
  • NAID: 120000861775
  • Peer Reviewed
• [Journal Article] A hyper-heuristic for descriptive rule induction (2007)
  • Author(s): Pham, T.H., Ho, T.B.
  • Journal Title: International Journal of Data Warehousing and Mining Vol.3, No.1 Pages: 54-66
  • Peer Reviewed
• [Journal Article] An Agent-Based Approach to Solve Dynamic Meeting Scheduling Problems with Preference (2007)
  • Author(s): Ben Hassine, A., Ho, T.B.
  • Journal Title: International Journal of Engineering Applications of Artificial Intelligence (Elsevier Publishers) Volume 20, Issue 6 Pages: 857-873
  • Peer Reviewed
• [Journal Article] Temporal Relations Extraction in Mining Hepatitis Data (2007)
  • Author(s): Ho, T.B., Nguyen, C.H., Kawasaki, S., Le, S.Q., Takabayashi, K.
  • Journal Title: Journal of New Generation Computing 25-3 Pages: 247-262
  • Peer Reviewed
• [Journal Article] A hyper-heuristic for descriptive rule induction (2007)
  • Author(s): Pham, T.H., Ho, T.B
  • Journal Title: International Journal of Data Warehousing and Mining 3-3 Pages: 54-66
  • Peer Reviewed
• [Journal Article] An Agent-Based Approach to Solve Dynamic Meeting Schendling Problems with Preference (2007)
  • Author(s): Ben Hassine, A., Ho, T.B.
  • Journal Title: International Journal of Engineering Applications of Artificial Intelligence 20-6 Pages: 857-873
  • Peer Reviewed
• [Journal Article] Exploiting Temporal Relations in Mining Hepatitis Data (2007)
  • Author(s): Nguyen, T.P., Ho, T.B.
  • Journal Title: Journal of New Generation Computing 25-3 Pages: 247-262
  • Peer Reviewed
• [Journal Article] Decision making under uncertainty with fuzzy targets (2007)
  • Author(s): Huynh, V.N., Nakamori, Y., M.Ryoke, Ho, T.B.
  • Journal Title: Fuzzy Optimization and Decision Making 6 Pages: 255-278
  • NAID: 120000861775
  • Peer Reviewed
• [Journal Article] Kernel Matrix Evaluation (2007)
  • Author(s): Nguyen, C.H., Ho, T.B.
  • Journal Title: International Journal of Engineering Applications of Artificial Intelligence 20-6 Pages: 857-873
  • Peer Reviewed
• [Presentation] Simulation-based Data Mining Solution to the Structure of Water Surrounding Proteins. (2011)
  • Author(s): Dam, H.C., Ho, T.B., Sugiyama, A.
  • Organizer: International Join Conference on Artificial Intelligence (IJCAI-2011)
  • Place of Presentation: Barcelona, Spain.
• [Presentation] Mining parallel documents across Web sites (2010)
  • Author(s): Pham, N.K., Ho, T.B.
  • Organizer: The Sixth Asia Information Retrieval Societies Conference AIRS 2010
  • Place of Presentation: Taipei, Taiwan.
• [Presentation] Discovering Relationship between Hepatitis C Virus NS5A Protein and Interferon/Ribavirin Therapy (2010)
  • Author(s): Kawasaki, S., Ho, T.B., Kanda, T., Yokosuka, O., Takabayashi, K., Le, T.N.
  • Organizer: International Conference on Knowledge, Information and Creativity Support Systems (Best paper award).
  • Place of Presentation: Chiangmai, Thailand
• [Presentation] Quantitatively assessing the effect of regulatory factors on nucleosome dynamics (2010)
  • Author(s): Ho, B.H., Le, N.T., Ho, T.B.
  • Organizer: IEEE-RIVF International Conference on Computing and Communication Technologies
  • Place of Presentation: Hanoi, Vietnam.
• [Presentation] サポートベクターマシンによる蛋白質水和水の物性解析 (2009)
  • Author(s): 杉山歩, 水上卓, Dam H.C, Ho T.B.
  • Organizer: 第三回分子科学討論会
  • Place of Presentation: 名古屋(ポスター発表)
  • Year and Date: 2009-09-23
• [Presentation] Support Vector Machine Study for Dynamical Water Classification Problem in Biosystems (2009)
  • Author(s): Sugiyama, A., Mizukami, T., Dam, H.C., Ho, T.B.
  • Organizer: International Conference on Knowledge, Information and Creativity Support Systems (KICSS 2009)(7-16)
  • Place of Presentation: Seoul, Korea
• [Presentation] Towards service-oriented knowledge discovery in biomedicine research (2009)
  • Author(s): Ho, T.B., Takabayashi, K., Pham, T.H., Nguyen, T.P., Kawasaki, S., Tran, D.H.
  • Organizer: International Workshop on Third Generation Data Mining, ECML/PKDD 2009 (100-113)
  • Place of Presentation: Bled, Slovenia
• [Presentation] An Empirical Study of Vietnamese Noun Phrase Chunking with Discriminative Sequence Models (2009)
  • Author(s): Nguyen, L.M., Nguyen, H.T., Nguyen, P.T., Ho, T.B., Shimazu, A.
  • Organizer: 7th Workshop on Asian Language Resources at 47th Annual Meeting of the Association for Computational Linguistics, ACL-IJCNLP (9-16)
  • Place of Presentation: Singapore, Singapore
• [Presentation] Privacy preserving EM-based Clustering (2009)
  • Author(s): Luong, T.D., Ho, T.B.
  • Organizer: IEEE RIVF International Conference on Computing and Communication Technologies (RIVF09, 111-117, IEEE Press.)
  • Place of Presentation: Da Nang, Vietnam
• [Presentation] Privacy preserving EM-based Clustering (2009)
  • Author(s): Luong, T.D., Ho, T.B.
  • Organizer: IEEE RIVF International Conference on Computing and Communication Technologies
  • Place of Presentation: Da Nang, Viet Nam
• [Presentation] Towards service-oriented knowledge discovery in biomedicine Research (2009)
  • Author(s): Ho, T.B., Takabayashi, K., Pham T.H., Nguyen, T.P., Kawasaki, S., Tran, D.H.
  • Organizer: International Workshop on Third Generation Data Mining, ECML/PKDD 2009
  • Place of Presentation: Bled, Slovenia
• [Presentation] An Empirical Study of Vietnamese Noun Phrase Chunking with Discriminative Sequence Models (2009)
  • Author(s): Nguyen, L.M., Nguyen, H.T, Nguyen, P.T., Ho, T.B., Shimazu, A.
  • Organizer: 7th Workshop on Asian Language Resources at 47th Annual Meeting of the Association for Computational Linguistics, ACL-IJCNLP 2009
  • Place of Presentation: Singapore
• [Presentation] Support Vector Machine Study for Dynamical Water Classification Problem in Biosystems (2009)
  • Author(s): Sugiyama, A., Mizukami, T, Dam, H.C., Ho, T.B.
  • Organizer: Fourth International Conference on Knowledge, Information and Creativity Support Systems (KICSS 2009)
  • Place of Presentation: Seoul, Korea(口頭発表)
• [Presentation] Waters Mediate Interaction between Proteins : An Observation by data Mining Method (2009)
  • Author(s): Sugiyama, A., T.Mizukami, Dam H.C., Ho T.B.
  • Organizer: 5th Conference of the Asian Consortium on Computational Materials Science
  • Place of Presentation: Hanoi, Vietnam(ポスター発表)
• [Presentation] Pt nano cluster on Carbon Nanotube support (2009)
  • Author(s): Dam H.C.
  • Organizer: The 5th Conference of the Asian Consortium on Computational Materials Science (ACCMS-5)
  • Place of Presentation: Hanoi, Vietnam(招待講演)
• [Presentation] Theoretical Study of the CO Electro catalytic Oxidation over Pt Clusters Supported by Carbon Nanotube (2009)
  • Author(s): Dam H.C.
  • Organizer: International Conference on Materials for Advanced Technologies
  • Place of Presentation: Singapore(口頭発表)
• [Presentation] First principles study of the physisorption of hydrogen molecule on grap hene and carbon nanotube surfaces adhered by Pt atom (2009)
  • Author(s): Pham T.L., Phan V.D., A.Sugiyama, A.Fujiwara, Dam H.C.
  • Organizer: International Conference on Materials for Advanced Technologies
  • Place of Presentation: Singapore(口頭発表)
• [Presentation] Integration of Word Sense Disambiguation into Phrase-Based Statistical Machine Translation (2008)
  • Author(s): Nguyen, P. T., Le, A. C., Shimazu, A., Ho, T. B.
  • Organizer: Empirical Methods for Asian Language Processing Workshop (AMALP'08)
  • Place of Presentation: Hanoi, Vietnam
  • Year and Date: 2008-12-15
• [Presentation] Combinatorial effects of histone modifications and DNA sequences on nucleosome dynamics (2008)
  • Author(s): Le, N. T., Tran, D. H., Ho, T. B.
  • Organizer: International Workshop on Knowledge, Language, and Learning in Bioinformatics (KLLBI'08)
  • Place of Presentation: Hanoi, Vietnam
  • Year and Date: 2008-12-15
• [Presentation] A computational method for classifying and analyzing tumor samples using microRNA expression profiles (2008)
  • Author(s): Tran, D.H., Ho, T.B., Satou, K., Pham, T.H.
  • Organizer: International Conference on Knowledge, Information and Creativity Support Systems (KICSS 2008)(120-127)(Student Best Paper Award).
  • Place of Presentation: Hanoi, Vietnam
• [Presentation] A Tree-to-String Phrase-based Model for Statistical Machine Translation (2008)
  • Author(s): Nguyen, P.T., Shimazu, A., Ho, T.B., Nguyen, L.M., Nguyen, V.V.
  • Organizer: Twelfth Conference on Computational Natural Language Learning (143-150)
  • Place of Presentation: Manchester, U.K.
• [Presentation] Simple but effective methods of combining kernels for the prediction problem in biology (2008)
  • Author(s): Tanabe, H., Ho, T.B., Nguyen, C.H., Kawasaki, S.
  • Organizer: IEEE RIVF International Conference on Computing and Communication Technologies (RIVF 08,IEEE Press, 71-78)
  • Place of Presentation: Ho Chi Minh City,Vietnam
• [Presentation] Estimating Quality of Support Vector Machines Learning Under Probabilistic and Interval Uncertainty : Algorithms and Computational Complexity (2008)
  • Author(s): Nguyen, C.H., Ho, T.B., Kreinovich, V.
  • Organizer: International Workshop on Interval/Probabilistic Uncertainty and Non-Classical Logics (UncLog'08)(Advances in Soft Computing 46, Springer, 57-69)
  • Place of Presentation: Kanazawa, Japan
• [Presentation] Construeting Signal Transduction Networks Using Multiple Signaling Feature Data (2008)
  • Author(s): Nguyen, T. P., Satou, K., Ho, T. B., Takabayashi, K.
  • Organizer: Statistical and Relational Learning in Bioinformatics 2008 Workshop (SRLB'08)
  • Place of Presentation: Antwerp, Belgium
• [Presentation] Simple but effective methods of combining kernels for the prediction problem in biology (2008)
  • Author(s): Tanabe, H., Ho, T. B., Nguyen, C. H., Kawasaki, S.
  • Organizer: IEEE International Conference on Research, Innovation, and Vision for the Future in Computing and Communication Technologies, (RIVF'08)
  • Place of Presentation: Ho Chi Minh City, Vietnam
• [Presentation] A Tree-to-String Phrase-based Model for Statistical Machine Translation (2008)
  • Author(s): Nguyen, P. T., Shimazu, A., Ho, T. B., Nguyen, L. M., Nguyen, V. V.
  • Organizer: Twelfth Conference on Computational Natural Language Learning (CNLL'08)
  • Place of Presentation: Manchester, UK
• [Presentation] Privacy Preserving for Multivariate Outlier Detection (2008)
  • Author(s): Luong, T. D., Ho, T. B.
  • Organizer: Third International Conference on Knowledge, Information and Creativity Support Systems (KICSS'08)
  • Place of Presentation: Hanoi, Vietnam
• [Presentation] A computational method for classifying and analyzing tumor samples using microRNA expression profiles (Student Best Paper Award). (2008)
  • Author(s): Tran, D. H., Ho, T. B., Satou, K., Pham, T. H.
  • Organizer: Third International Conference on Knowledge, Information and Creativity Support Systems (KICSS'08)
  • Place of Presentation: Hanoi, Vietnam
• [Presentation] Feature Similarity : Geometrical Modeling and Discriminative Kernel Learning (2008)
  • Author(s): Nguyen, C. H., Ho, T. B.
  • Organizer: 3^<rd> International Workshop on Data Mining and Statistical Science (DMSS'08)
  • Place of Presentation: Tokyo, Japan
• [Presentation] Vietnamese Language Processing : Issues and Challenges (招待講演)http : //www. hanoiforum. vnu. edu. vn/index. phn? option=cnm_content&task=blogcategory&id=294&Itemid=715 (2008)
  • Author(s): Ho, T. B.
  • Organizer: Symposium at Hanoi Forum on Information, Communication Technology 2008 (ICT-Hanoi'08)
  • Place of Presentation: Tokyo, Japan
• [Presentation] Estimating Quality of SupPort Vector Machines Learning Under Probabilstic and Interval Uncertainty: Algorithms and Computational Cbmplexity (2008)
  • Author(s): Nguyen, C.H., Ho, T.B., Kreinovich, V.
  • Organizer: International Workshop on IntervalノProbabilistic Uncertainty and Non-Classical Logics (UncLog'08)
  • Place of Presentation: 金沢市
• [Presentation] 密度汎関数計算によるカーボンナノチューブに吸着された金属クラスターの電子状態に関する研究 (2007)
  • Author(s): 杉山 歩, Dam Hieu Chi
  • Organizer: 第一回分子科学討論会
  • Place of Presentation: 仙台
  • Year and Date: 2007-09-17
• [Presentation] First-principles investigation for the transport properties of single wall carbon nanotube (2007)
  • Author(s): A.Sugiyama, Dam Hieu Chi, Nguyen Thanh Cuong, T.Ozaki, T.Mitani
  • Organizer: The 4th conference of the Asian Consortium on Computational Materials Science
  • Place of Presentation: 韓国Seoul
  • Year and Date: 2007-09-14
• [Presentation] Prediction of Histone Modifications in DNA sequences (2007)
  • Author(s): Pham, T.H., Ho, T.B., Tran, D.H., Satou, K.
  • Organizer: IEEE 7th International Symposium on Bioinformatics & Bioengineering (IEEE BIBE 2007)(959-966)
  • Place of Presentation: Cambridge-Boston, U.S.A.
• [Presentation] Temporal Abstraction and Data Mining with Visualization of Laboratory Data (2007)
  • Author(s): Takabayashi, K., Ho, T.B., Yokoi, H., Nguyen, T.D., Kawasaki, S., Le, S.Q., Suzuki, T., Yokosuka, O.
  • Organizer: Medinfo 2007 Congress (IOI Press, 1304-1308)
  • Place of Presentation: Brisbane, Australia
• [Presentation] Combining Domain Fusions and Domain-Domain Interactions to Predict Protein-Protein Interactions (2007)
  • Author(s): Nguyen, T.P., Ho, T.B.
  • Organizer: Workshop on Data Mining in Bioinformatics BIOKDD07 (13th International Conference on Knowledge Discovery and Data Mining ACM SIGKDD 2007, 27-34)
  • Place of Presentation: San Jose, U.S.A.
• [Presentation] Combining Domain Fusions and Domain-Domain Interactions to Predict Protein-Protein Interactions (2007)
  • Author(s): Nguyen, T.P., Ho, T.B.
  • Organizer: Workshop on Data Mining in Bioinformatics BIOKDD07, 13th International Conference on Knowledge Discovery and Data Mining ACMSIGKDD2007
  • Place of Presentation: 米国サンノゼ
• [Presentation] Temporal Abstraction and Data Mining with Visualization of Laboratory Data (2007)
  • Author(s): Takabayashi, T., Ho, T.B., Yokoi, H., Nguyen, T.D., Kawasaki, S., Le, S.Q., Suzuki, T., Yokosuka, O.
  • Organizer: Medinfo 2007 Congress
  • Place of Presentation: オーストラリアBrisbane
• [Presentation] Prediction of Histone Modifications in DNA sequences (2007)
  • Author(s): Pham, T.H., Ho., T.B., D.H., Satou, K.
  • Organizer: IEEE 7th International Symposium on Bioinformatics & Bioengineering (IEEE BIBE 2007)
  • Place of Presentation: 米国Boston
• [Presentation] Prediction of protein-protein interactions and disease genes by machine learning (2007)
  • Author(s): Nguyen, T.P., Ho, T.B.
  • Organizer: International Workshop on Data Mining and Statistical Science (DMSS2007)
  • Place of Presentation: 東京
• [Presentation] A Semi-Supervised Leaning Approach to Disease Gene Prediction (2007)
  • Author(s): Nguyen, T.P., Ho, T.B.
  • Organizer: 2007 IEEE International Conference on BioInformation and BioMedicine (BIBM 2007)
  • Place of Presentation: 米国Silicon Valley
• [Presentation] Effects of carbon supports on Pt Nano-cluster Catalyst (2007)
  • Author(s): Nguyen Thanh Cuong, Dam Hieu Chi, A.Fujiwara and T.Mitani
  • Organizer: International Conference On Materials for Advanced Technologies
  • Place of Presentation: Singapore
• [Presentation] Catalytic Activity of Pt Clusters supported on Carbon Nanotubes: A first-principles Study (2007)
  • Author(s): Nguyen Thanh Cuong, Dam Hieu Chi, A.Fujiwara and T.Mitani
  • Organizer: International Conference on the Applications of Density Functional Theory
  • Place of Presentation: オランダAmsterdam
• [Presentation] Prediction of Protein-Protein Interactions Using Bayesian Networks (2007)
  • Author(s): Nguyen, T.P., Ho, T.B., Nguyen, N.B.
  • Organizer: The 2nd International Conference on Knowledge, Information and Creativity Support Systems HICSS07
  • Place of Presentation: 石川県
• [Presentation] Scientific data mining: a new direction in computational science (2007)
  • Author(s): Ho, T.B., Dam, H.C., Kawasaki, S., Pham, T.H., Nguyen, T.P.
  • Organizer: Malaysia-Japan International Symposium on Advanced Technology (MJISAT 2007)
  • Place of Presentation: マレーシアKuala Lumpur
• [Book] Knowledge Technology and Science (Knowledge Discovery (Chapter 4))(Y.Nakamori (Ed.)) (2011)
  • Author(s): Ho, T.B.
  • Publisher: CRC Press and Taylor & Francis
• [Book] Data Mining : Medical, Health, Social and Biological Applications (Mining multiple biological data for reconstructing signal transduction networks)(D.Holmes (Ed.)) (2011)
  • Author(s): Nguyen, T.P., Ho, T.B.
  • Publisher: Springer (to appear).
• [Book] Proceedings of the 13th Pacific-Asia Conference on Knowledge Discovery and Data Mining, Lecture Notes in Artificial Intelligence LNAI 5476(Advances in Knowledge Discovery and Data Mining (Eds.)) (2009)
  • Author(s): Theramunkong, T., Kijsirikul, B, Cercone, N., Ho, T.B.編
  • Total Pages: 1076
  • Publisher: Springer
• [Book] Rational, Robust, and Secure Negotiations in Multi-Agent Systems中 "Asynchronous Constraint-Based Approach : New Solution for any Constraint Problem" (Hassine, B. A., Ho, T. B. 分担執筆, pp. 169-184) (2008)
  • Author(s): Ito, T., Hattori, H., Zhang, M., Matsuo, T. 編
  • Publisher: Springer
• [Book] PRICAI 2008 : Trends in Artificial Intelligence (Eds. ), Proceedings of the 10th Pacific Rim Conference on Artificial Intelligence, Lecture Notes in Artificial Intelligence LNAI 5351 (2008)
  • Author(s): Ho, T. B., Zhou, Zhi-Hua編
  • Total Pages: 1250
  • Publisher: Springer
• [Book] Advances in Data Warehousing and Mining (Study of protein-protein interactions from multiple data sources)(David Taniar (Ed.)) (2007)
  • Author(s): Ho, T.B., Nguyen, T.P., Tran, T.N.
  • Publisher: IGC Publishers
• [Book] Handbook of Granular Computing (Rough Document Clustering and the Internet)(Pedrycz, Skowron, Kreinovich (Eds.)) (2007)
  • Author(s): Nguyen, H.S., Ho, T.B.
  • Publisher: John Wiley & Sons.
• [Book] In Selected Contributions in Data Analysis and Classification (Finding Rules in Data)(P.Brito, P.Ber-trand, G.Cucumel, F.De Carvalho (Eds.)) (2007)
  • Author(s): Ho, T.B.
  • Publisher: Springer
• [Book] Selected Contributions in Data Analysis and Classification 中"Finding Rules in Data"(Ho, T.B.分担執筆, pp.387-396) (2007)
  • Author(s): P.Brito, P.Ber-trand, G.Cucumel, F.De Carvalho 編集
  • Total Pages: 634
  • Publisher: Springer
• [Book] Advances in Data Warehousing and Mining 中"Study of protein-protein interactions from multiple data sources(Ho, T.B., Nguyen, T.P, Tran, T.N.分担執筆, pp.280-307)" (2007)
  • Author(s): David Talliar 編
  • Total Pages: 379
  • Publisher: IGC Publishers