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Analysis of phosphorylation signaling pathways

Research Project

Project/Area Number 19310129
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Applied genomics
Research InstitutionThe University of Tokyo

Principal Investigator

IHARA Sigeo  The University of Tokyo, 先端科学技術研究センター, 特任教授 (30345136)

Co-Investigator(Kenkyū-buntansha) 浜窪 隆雄  東京大学, 先端科学技術研究センター, 教授 (90198797)
南敬 (南 敬)  東京大学, 先端科学技術研究センター, 特任准教授 (00345141)
川村 猛  東京大学, 先端科学技術研究センター, 特任助教 (70306835)
大田 佳宏  東京大学, 先端科学技術研究センター, 特任研究員 (80436592)
Project Period (FY) 2007 – 2008
Project Status Completed (Fiscal Year 2008)
Budget Amount *help
¥18,590,000 (Direct Cost: ¥14,300,000、Indirect Cost: ¥4,290,000)
Fiscal Year 2008: ¥9,490,000 (Direct Cost: ¥7,300,000、Indirect Cost: ¥2,190,000)
Fiscal Year 2007: ¥9,100,000 (Direct Cost: ¥7,000,000、Indirect Cost: ¥2,100,000)
Keywordsリン酸化 / 転写複合体 / シミュレーション / プロテオミクス / 膜タンパク質複合体
Research Abstract

ヒト臍帯静脈上皮細胞、および脂肪前駆細胞の転写調節の動きをDNAアレイチップや機能を阻害する手法を用いて解析し、細胞内で刺激応答に起因する内在性のリン酸化状態変化を網羅的にプロテオミクスの観点からとらえることを目標にした。マイクロアレイの時系列データをもとにリン酸化シグナルパスウェイを予測し、報告者の文献情報データも含めたプロテオミクスの方法から検証し、刺激応答のリン酸化ダイナミクスに関係する遺伝子および蛋白質を選定し、シグナル伝達における細胞の反応のダイナミクスの一端を明らかにした。

Report

(3 results)
  • 2008 Annual Research Report   Final Research Report ( PDF )
  • 2007 Annual Research Report
  • Research Products

    (20 results)

All 2009 2008 2007 2006 Other

All Journal Article (5 results) (of which Peer Reviewed: 3 results) Presentation (11 results) Remarks (4 results)

  • [Journal Article] PPARγ/ RXRα Heterodimer Targets Genes of Histone Modification Enzymes Setd8 and Regulates Adipogenesis through a Positive Feed-Back2009

    • Author(s)
      Ken-ichi Wakabayashi, Masashi Okamura, Shuichi Tsutsumi, Naoko Nishikawa, Toshiya Tanaka, Iori Sakakibara, Jun-ichi Kitakami, Sigeo Ihara, Yuichi Hashimoto, Takao Hamakubo, Tatsuhiko Kodama, Hiroyuki Aburatani, and Juro Sakai
    • Journal Title

      Mechanism, Mol. Cell. Biol MCB. 01856-08v1(In press)

    • Related Report
      2008 Final Research Report
    • Peer Reviewed
  • [Journal Article] Nuclear Inhibitor of Protein Phosphatase-1 (NIPP1) Directs Protein Phosphatase-1 (PP1) to Dephosphorylate the U2 Small Nuclear Ribonucleoprotein Particle (snRNP) Component, Spliceosome-associated Protein 155 (Sap155)2008

    • Author(s)
      Nobuhiro Tanuma, Sei-Eun Kim, Monique Beullens, Yao Tsubaki, Shinya Mitsuhashi, Miyuki Nomura, Takeshi Kawamura, Kyoichi Isono, Haruhiko Koseki, Masami Sato, Mathieu Bollen, Kunimi Kikuchi, and Hiroshi Shima
    • Journal Title

      The Journal of Biological Chemistry 283

      Pages: 35805-35814

    • Related Report
      2008 Final Research Report
    • Peer Reviewed
  • [Journal Article] Structural dependence of robustness and load tolerance in scale-free networks2007

    • Author(s)
      Nobuhiko Oshida and Sigeo Ihara
    • Journal Title

      arXiv:0710.2513 710.2513

    • Related Report
      2007 Annual Research Report
  • [Journal Article] Structural dependence of robustness and load tolerance in scale-free networks

    • Author(s)
      Nobuhiko Oshida and Sigeo Ihara
    • Journal Title

      arXiv : 0710.2513

    • Related Report
      2008 Final Research Report
  • [Journal Article] PPARγ/RXRα Heterodimer Targets Genes of Histone Modification Enzymes Setd8 and Regulates Adipogenesis through a Positive Feed-Back Mechanism

    • Author(s)
      Wakabayashi et al
    • Journal Title

      Mol. Cell. Biol. (印刷中)

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Presentation] Multiple Snapshots Obtained Using Genomic Tiling Arrays Reveal the Dynamics of Transcription in Human Umbilical2008

    • Author(s)
      Tatsuhiko Kodama, Yoshihiro Ohta, Meng Xu, Takashi Minami, Youichiro Wada, Shu-ichi Tsutsumi, Shumpei Ishikawa, Takao Hamakubo, Hiroyuki Aburatani, Peter R Cook, and Sigeo Ihara
    • Organizer
      Endothelial Cells
    • Place of Presentation
      Sydney, Australia
    • Related Report
      2008 Final Research Report
  • [Presentation] Traffic efficiency of scale-free networks in biological systems2007

    • Author(s)
      Nobuhiko Oshida, Jun-ichi Kitakami, and Sigeo Ihara
    • Organizer
      Cold spring Harvar Meeting, The Conference on Engineering Principles in Bio
    • Place of Presentation
      Cold spring Harvar,NY,US
    • Year and Date
      2007-12-03
    • Related Report
      2007 Annual Research Report
  • [Presentation] High-resolution targeted proteomics of endogenousnuclear receptor comprex using high-quality immunomagnetic beads2007

    • Author(s)
      Kenji Daigo, Takeshi Kawamura, Satoshi Katayose, Yoshihiro Ohta,Toshiya Tanaka, Sigeo Ihara, Tatsuhiko Kodama, Takao Hamakubo
    • Organizer
      Cold Spring Harbor Laboratory Mechanisms of Eukaryotic Transcription meeting
    • Place of Presentation
      Cold Spring Harbor, NY
    • Year and Date
      2007-08-31
    • Related Report
      2008 Final Research Report
  • [Presentation] HIGH-RESOLUTION TARGETED PROTEOMICS OF ENDOGENOUS NUCLEAR RECEPTOR COMPLEX USING HIGH-QUALITY IMMUNOMAGNETIC BEADS2007

    • Author(s)
      Kenji Daigo, Takeshi Kawamura, Satoshi Katayose, Toshiya Tanaka, Yoshihiro Ohta Sieo Ihara
    • Organizer
      Cold spring Harvar Meeting, Mecharlisms of eukaryotic transcription
    • Place of Presentation
      Cold spring Harvar,NY,US
    • Year and Date
      2007-08-30
    • Related Report
      2007 Annual Research Report
  • [Presentation] Packet traffic analysis of interactome networks.The Conference on Interactome Networks2007

    • Author(s)
      Nobuhiko Oshida, Naoko S.Nishikawa, Yoshihiro Ohta, Rikako Suzuki and Sieo Ihara
    • Organizer
      Welcome Trust/Coldspring Harvar Meeting Interactome Network
    • Place of Presentation
      Welcome Trust, Hinxton,UK
    • Year and Date
      2007-08-03
    • Related Report
      2007 Annual Research Report
  • [Presentation] Packet traffic analysis of interactome networks2007

    • Author(s)
      Nobuhiko Oshida, Naoko S. Nishikawa, Yoshihiro Ohta, Rikako Suzuki, and Sigeo Ihara
    • Organizer
      The Conference on Interactome Networks, Welcome Trust
    • Place of Presentation
      UK
    • Related Report
      2008 Final Research Report
  • [Presentation] Robustness analysis of network topology and node removal strategy2007

    • Author(s)
      Nobuhiko Oshida, and Sigeo Ihara
    • Organizer
      European Conference on Complex Systems, Dresden
    • Place of Presentation
      Germany
    • Related Report
      2008 Final Research Report
  • [Presentation] Robustness of the protein interaction network2007

    • Author(s)
      Nobuhiko Oshida, Jun-ichi Kitakami, Naoko S. Nishikawa, Yoshihiro Ohta, and Sigeo Ihara
    • Organizer
      The 7th international workshop on advanced genomics
    • Place of Presentation
      Tokyo, Japan
    • Related Report
      2008 Final Research Report
  • [Presentation] Robustness analysis of network topology and node removal strategy2007

    • Author(s)
      Nobuhiko Oshida and Sigeo Ihara
    • Organizer
      European Conference on Complex Systems
    • Place of Presentation
      Dresden,Germany
    • Related Report
      2007 Annual Research Report
  • [Presentation] Robustness of the protein interaction networks2007

    • Author(s)
      Nobuhiko Oshida, Jun-ichi Kitakami, Naoko S. Nishikawa, Yoshihiro Ohta, and Sieo Ihara
    • Organizer
      The 7th international workshop on advanced genomics
    • Place of Presentation
      Tokyo
    • Related Report
      2007 Annual Research Report
  • [Presentation] Traffic efficiency of scale-free networks in biological systems. The Conference on Engineering Principles in Biological Systems2006

    • Author(s)
      Nobuhiko Oshida, Jun-ichi Kitakami, and Sigeo Ihara
    • Organizer
      Cold Spring Harbor Laboratory
    • Place of Presentation
      USA
    • Related Report
      2008 Final Research Report
  • [Remarks]

    • URL

      http://www.lsbm.org/

    • Related Report
      2008 Final Research Report
  • [Remarks]

    • URL

      http://www.escut.org/

    • Related Report
      2008 Final Research Report
  • [Remarks]

    • URL

      http://www.lsbm.org/

    • Related Report
      2008 Annual Research Report
  • [Remarks]

    • URL

      http://www.lsbm.org/

    • Related Report
      2007 Annual Research Report

URL: 

Published: 2007-04-01   Modified: 2016-04-21  

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